Streams are often sources of carbon dioxide (CO2) and methane (CH4), particularly in agricultural regions where sediment and organic matter inputs can be substantial. Floods are occurring more often and more intensely in southern Wisconsin, one such agricultural region, due to climate change and few studies have investigated how floods impact stream CO2 and CH4 fluxes and concentrations. I compared concentrations and fluxes of CO2 and CH4 with greater than 30 variables representing in-stream and watershed attributes at 10 sites in mixed agricultural and suburban locations in southern Wisconsin. Sampling was conducted 10 times at each site during the growing season (May-November) in 2018