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  • Catalog of NCBI sequence read archive (SRA) data for salamanders at the Hubbard Brook Experimental Forest 2012-2019
  • Lowe, Winsor H; University of Montana, Division of Biological Sciences
    Addis, Brett R
    Cochrane, Madaline M
  • 2024-04-05
  • Lowe, W.H., B.R. Addis, and M.M. Cochrane. 2024. Catalog of NCBI sequence read archive (SRA) data for salamanders at the Hubbard Brook Experimental Forest 2012-2019 ver 3. Environmental Data Initiative. https://doi.org/DOI_PLACE_HOLDER (Accessed 2024-12-28).

  • This project was designed to describe fine-scale population genetic differentiation of the stream salamander Gryinophilus porphyriticus among five study streams in the Hubbard Brook Experimental Forest. Additionally, the data are paired with intensive capture-recapture data to assess direct fitness effects of individual genetic diversity. Specifically, the data were used to investigate effects of individual multilocus heterozygosity on survival during metamorphosis, a sensitive life stage in aquatic salamanders.

    This dataset publishes a manifest of the genomic sequence reads submitted to NCBI Sequence Read Archive (SRA). These samples are published at the National Center for Biotechnology Information (NCBI) under the BioProject ID 1090913 (https://www.ncbi.nlm.nih.gov/bioproject/1090913). The tables here include sample metadata and the NCBI URLs to each sample.

    These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.

  • N: 43.959      S: 43.914      E: -71.7022      W: -71.8062
  • This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.
  • DOI PLACE HOLDER
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