Data were collected from May to November 2019 at five sites on two stream reaches in the Kickapoo River Watershed. Sites include Billings Creek restoration site (BRES), Billings Creek reference site (BREF), Warner Creek upstream site (WUP), Warner Creek middle site (WMD), and Warner Creek downstream (WDN) site. Data were collected by Dr. Caroline Gottschalk Druschke as part of research into the impacts of stream restoration and flooding on Kickapoo River Watershed (WI, USA) streams. Data were collected on methane and carbon dioxide fluxes on all reaches, as well as cross sectional area and soft sediment depth on the restored reach on Billings Creek before and after restoration in July 2019.