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Title:

Datasets for: A Global Review of Pyrosomes: Shedding light on the ocean’s elusive gelatinous ‘fire-bodies’

Creators:

Lilly, Laura E.

Publication Date:

2023-05-24

Citation:

Lilly, L.E. 2023. Datasets for: A Global Review of Pyrosomes: Shedding light on the ocean’s elusive gelatinous ‘fire-bodies’ ver 1. Environmental Data Initiative. https://doi.org/DOI_PLACE_HOLDER (Accessed 2024-12-29).

Abstract:

These are the datasets used to create all figures included in: Lilly et al. (in review). A Global Review of Pyrosomes: Shedding light on the ocean’s elusive gelatinous ‘fire-bodies’. The review presents a comprehensive global description of the body of current knowledge on pyrosomes, a zooplanktonic tunicate taxon closely related to salps, doliolids, and appendicularians.

For review analyses, we used pyrosome observations and associated information from literature-published studies and four databases: NOAA COPEPOD Urochordates database (NOAA, 2022; https://www.st.nmfs.noaa.gov/copepod/atlas/html/taxatlas_4350000.html), BCO-DMO Jellyfish Database Initiative (JeDI; Condon et al., 2014; https://www.bco-dmo.org/dataset/526852), Global Biodiversity Information Facility (GBIF; https://doi.org/10.15468/dl.a8phvp), and Ocean Biodiversity Information System (OBIS; https://obis.org/taxon/137216). We matched pyrosome observations to corresponding satellite-measured sea surface temperature (NOAA Optimum Interpolation Sea Surface Temperature, v2, high-resolution, https://psl.noaa.gov/data/gridded/data.noaa.oisst.v2.highres.html) and chlorophyll-a (MODIS-AQUA, 4 km^2 resolution, Melin, 2013; http://data.europa.eu/89h/10161412-a76c-42b0-b4e1-5fcccdc412b2). The files included in this metadata record have been subsetted from all original file sources. Our subsetted files are designed to run with the associated MATLAB scripts to recreate all manuscript files.

We include seven MATLAB scripts: 1) A four-part script to clean up all pyrosome observations, divide to species level, and remove duplicate records from multiple databases and within each database, and 2) Three standalone scripts to plot Figs. 1, 2, and 3.

Spatial Coverage:

N: 90.0 S: -90.0 E: 180.0 W: -180.0

Package ID:

edi.1355.1 (Uploaded 2023-05-24)
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Resources:

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Data Entities:
1. GBIF_Pyrosoma (1.0 MiB; 9 downloads)
2. GBIF_Pyrosomella (50.7 KiB; 8 downloads)
3. GBIF_Pyrostremma (10.3 KiB; 7 downloads)
4. JeDI_Pyro_All (279.6 KiB; 6 downloads)
5. LiteratureStudies_PyrosomeObs_All (4.2 KiB; 7 downloads)
6. OBIS_Pyro_All (801.5 KiB; 6 downloads)
7. Pyros_Chla_match (561.5 KiB; 6 downloads)
8. Pyros_Temp_match (530.9 KiB; 6 downloads)
9. Lilly_etal_PyrosRev_St1a_DataIn (6.1 KiB; 5 downloads)
10. Lilly_etal_PyrosRev_St1b_SppDivs (6.0 KiB; 6 downloads)
11. Lilly_etal_PyrosRev_St1c_DupRmv (24.6 KiB; 6 downloads)
12. Lilly_etal_PyrosRev_St1d_DupRmv2 (13.9 KiB; 5 downloads)
13. Lilly_etal_PyrosRev_St2_Fig1 (6.4 KiB; 5 downloads)
14. Lilly_etal_PyrosRev_St2_Fig2 (8.6 KiB; 5 downloads)
15. Lilly_etal_PyrosRev_St2_Fig3 (8.4 KiB; 5 downloads)
16. NOAA_COPEPOD_Urochordates (18.4 MiB; 5 downloads)

Intellectual Rights:

This data package is released to the "public domain" under Creative Commons CC0 1.0 "No Rights Reserved" (see: https://creativecommons.org/publicdomain/zero/1.0/). It is considered professional etiquette to provide attribution of the original work if this data package is shared in whole or by individual components. A generic citation is provided for this data package on the website https://portal.edirepository.org (herein "website") in the summary metadata page. Communication (and collaboration) with the creators of this data package is recommended to prevent duplicate research or publication. This data package (and its components) is made available "as is" and with no warranty of accuracy or fitness for use. The creators of this data package and the website shall not be liable for any damages resulting from misinterpretation or misuse of the data package or its components. Periodic updates of this data package may be available from the website. Thank you.

Digital Object Identifier:

DOI PLACE HOLDER

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Journal Citations:

Copyright 2024 Environmental Data Initiative. This material is based upon work supported by the National Science Foundation under grants #2223103 and #2223104. Any opinions, findings, conclusions, or recommendations expressed in the material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. Please contact us with questions, comments, or for technical assistance regarding this web site or the Environmental Data Initiative. Please read our privacy policy to know what information we collect about you and to understand your privacy rights.

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

This data package was submitted to a staging environment for testing purposes only. Use of these data for anything other than testing is strongly discouraged.

This data package is not the most recent revision of a series. (View Newest Revision)

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