Data Package Metadata   View Summary

Flume Erosion Testing of Unamended and Organic Matter Amended Soil Samples Using an Acoustic Doppler Profiler, 2021

General Information
Data Package:
Local Identifier:edi.1018.3
Title:Flume Erosion Testing of Unamended and Organic Matter Amended Soil Samples Using an Acoustic Doppler Profiler, 2021
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data accompanies a publication titled "Soil Amended with Organic Matter Increases Fluvial Erosion Resistance of Cohesive Streambank Soil". Briefly, fluvial erosion testing was conducted on soil samples using an indoor flume channel. Soil samples were previously collected from the riparian zone of a river near Virginia Tech's campus in Blacksburg, VA, USA. The soil was subsequently air-dried and stored until use. Prior to erosion testing, soil samples were amended with varying amounts of organic matter (0%, 1%, and 4% OM by mass), compacted to a bulk density of 0.95 KilogramsPerCubicCentiMeters in growth containers, and allowed to mature in a greenhouse setting for 50 days prior to flume erosion testing. An Acoustic Doppler Profiler (ADP) was used to measure soil erosion and collect three-dimensional velocity data during erosion tests; raw velocity and soil depth data for each sample tested were stored in MATLAB files.

Follow testing, the soil remaining from each sample was collected, stored, and analyzed for aggregate stability, soil organic matter (SOM), and extracellular polymeric substances (EPS). Additionally, soil temperature, water temperature, and volumetric water content were also measured prior to or during erosion testing. Data collected from this study, and the accompanying ADP MATLAB files, are presented here.

Publication Date:2022-01-31
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2021-03-01
End:
2021-04-01

People and Organizations
Contact:Smith, Daniel J (Virginia Tech, Graduate Student) [  email ]
Creator:Smith, Daniel J (Virginia Tech, Graduate Student)
Creator:Snead, Michael (Virginia Tech, Undergraduate Student)
Creator:Wynn-Thompson, Theresa M (Virginia Tech, Associate Professor)
Associate:Wynn-Thompson, Theresa 

Data Entities
Data Table Name:
PublicationData_2021
Description:
This processed data accompanies the publication titled "Soil Amended with Organic Matter Increases Fluvial Erosion Resistance of Cohesive Streambank Soil". It represents aggregate stability, extracellular polymeric substances, and erosion data collected on samples in flume and laboratory settings in 2021 at Virginia Tech.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1018/3/eacb6d0f80526b8ccfc89a5aac0524c8
Name:PublicationData_2021
Description:This processed data accompanies the publication titled "Soil Amended with Organic Matter Increases Fluvial Erosion Resistance of Cohesive Streambank Soil". It represents aggregate stability, extracellular polymeric substances, and erosion data collected on samples in flume and laboratory settings in 2021 at Virginia Tech.
Number of Records:24
Number of Columns:16

Table Structure
Object Name:SOMStudy_ProcessedData_v2.csv
Size:2166 byte
Authentication:83bc9dd42d97a4818ae6734056bf1be7 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 TreatmentAmount of Organic Matter AddedBlockEPS CarbohydratesEPS ProteinsMean weight diameter (mm)Large Macroaggregates (g)Small Macroaggregates (g)Microaggregates (g)Soil Organic Matter (LOI method)Average soil temperature (deg C)Average Volumetric Water Content (percent)Average Water Temperature (deg C)WaterTemp - SoilTemp (deg C)Erodibility Coefficient (cm/hr/Pa)Erodibility coefficient p-value
Column Name:Treatment  
OM_Addition  
Block  
EPSCarbs_ug_g  
EPSProt_ug_g  
MWD_mm  
Macroaggs_g  
SmallMacroaggs_g  
Microaggs_g  
SOM  
SoilTemp_C  
VWC_percent  
WaterTemp_C  
WaterSoilTemp_C  
kd_cm_hrPa  
p_value  
Definition:Treatments used in this studyDescription of treatments used in this studyName of block that soil treatments were placed intoExtracellular Polymeric Substances (EPS) measured as carbohydratesExtracellular Polymeric Substances (EPS) measured as proteinsMean weight diameter (mm) is a representation of soil aggregate stabilityMass of stable and large macroaggregatesMass of stable and small macroaggregatesMass of stable microaggregatesSOM is the soil organic matter (measured using the loss on ignition method) represented as a percentAverage soil temperature (degrees Celsius) prior to erosion start. Soil temperature was measured in three separate locations for each soil sampleAverage volumetric water content of soil samples (percent) prior to erosion start. VWC was measured in three separate locations for each soil sampleAverage water temperature (degrees Celsius) of soil samples during erosion testing. Water temperature was measured for each subsample (three in total) and then averaged.The difference between water temperature and soil temperature (degrees Celsius)Soil erodibility coefficient (kd) represents the erodibility of each soil sample tested in the flume (cm/hr/Pa). This was determined by using the Reynold's shear stress and erosion rate data collected for each experimental samplep_value represents the p-value of the linear regression line used to calculate the soil erodibility coefficient (kd) (unitless). A value less than 0.05 is considered a significant linear relationship
Storage Type:string  
string  
string  
float  
float  
float  
float  
float  
float  
string  
float  
float  
float  
float  
float  
float  
Measurement Type:nominalnominalnominalratioratioratioratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeT0
DefinitionSoil treatment without organic matter additions (0% grass clippings)
Source
Code Definition
CodeT1
DefinitionSoil treatment with 1% (by mass) organic matter additions
Source
Code Definition
CodeT4
DefinitionSoil treatment with 4% (by mass) organic matter additions
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0% Grass
Definition0% (by mass) grass clippings added to soil
Source
Code Definition
Code1% Grass
Definition1% (by mass) grass clippings added to soil
Source
Code Definition
Code4% Grass
Definition4% (by mass) grass clippings added to soil
Source
DefinitionName of block that soil treatments were placed into
UnitmicrogramPerGram
Precision0.1
Typereal
UnitmicrogramPerGram
Precision0.1
Typereal
Unitmillimeter
Precision0.01
Typereal
Unitgram
Precision0.01
Typereal
Unitgram
Precision0.01
Typereal
Unitgram
Precision0.01
Typereal
Unitpercent
Precision0.1
Typereal
Unitcelsius
Precision0.1
Typereal
Unitpercent
Precision0.1
Typereal
Unitpercent
Precision0.01
Typereal
Unitcelsius
Precision0.1
Typereal
UnitcentimeterPerHourPerPascal
Precision0.1
Typereal
Unitunitless
Precision0.001
Typereal
Missing Value Code:                    
Codenan
ExplNo data was recorded
Codenan
ExplNo data was recorded
 
Codenan
ExplNo data was recorded
   
Accuracy Report:                                
Accuracy Assessment:                                
Coverage:                                
Methods:                                

Data Package Usage Rights

This data package is released to the "public domain" under Creative Commons CC0 1.0 "No Rights Reserved" (see: https://creativecommons.org/publicdomain/zero/1.0/). It is considered professional etiquette to provide attribution of the original work if this data package is shared in whole or by individual components. A generic citation is provided for this data package on the website https://portal.edirepository.org (herein "website") in the summary metadata page. Communication (and collaboration) with the creators of this data package is recommended to prevent duplicate research or publication. This data package (and its components) is made available "as is" and with no warranty of accuracy or fitness for use. The creators of this data package and the website shall not be liable for any damages resulting from misinterpretation or misuse of the data package or its components. Periodic updates of this data package may be available from the website. Thank you.

Keywords

By Thesaurus:
(No thesaurus)flume, extracellular polymeric substances, aggregate stability, soil erodibility, acoustic doppler profiler

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

To quantify the impact of organic matter (OM) amendments on soil aggregate stability, extracellular polymeric substances (EPS), and streambank fluvial erosion rates, increasing amounts of dried and crushed (< 1 mm) cool season grass clippings were used [0 (T0), 1 (T1), and 4 g of clippings per 100 g of soil (T4)]. A total of eight samples were created per treatment (24 samples in total); the treatments were compacted into the growth containers and allowed to mature in a greenhouse (temperatures ranged from 31 to 46°C during the day and 17 to 23°C throughout the night) for 50 days before erosion testing and soil sampling. A randomized complete block design was used, with one treatment randomly placed within each block. This was done to control for variation in an experiment by accounting for spatial effects in the greenhouse (e.g. differences in sunlight, temperature, etc.). Given the time required to complete erosion testing on one block of samples, placement of blocks in the greenhouse was staggered over a three-week timeframe starting in March 2021.

The flume bed slope was held constant at 0.1% and three flow rates were used (one per subsample): 17.5, 28.5, and 48.8 L/s. The sample was covered before running the flume prevented the application of hydraulic shear on the soil surface as the flow developed in the channel. Testing started once the flow became fully developed (about 90 seconds). The ADP was set to a recording frequency of 100 Hz. Erosion testing lasted for 10 minutes, or until all of the soil had been eroded away (whichever came first). The distance of the ADP probe head to the soil surface was monitored via the Vectrino software, and the soil core was advanced back to the initial position, flush with the wall, after every millimeter of erosion (Akinola et al., 2019). This process was repeated for all three soil subsamples using a different flowrate. The erosion testing time was reduced to 5 minutes for the T0 and T1 subsamples at 48.8 L/s due to the high amount of erosion that occurred. This was done so some soil would be left over for additional analyses following erosion testing. Volumetric water content and soil temperature were measured prior to the start of erosion testing.

The velocity time series data from the ADP was processed in R. ADP data were filtered out if the signal-to noise (SNR) ratio was ≤ 10 dB and the signal correlation (COR) was ≤ 40% (Martin et al., 2002; Strom & Papanicolaou, 2007). If a bin had 30% of its velocity data removed after filtering, that entire bin was removed from further analysis. Following data filtering, all velocity time series were despiked using the phase-space threshold method developed by Goring & Nikora (2002) and modified by Wahl (2002) using Matlab code created by Ikard Scott (2016).

After testing each subsample in the flume, the soil remaining was collected for EPS, aggregate stability, and organic matter content analysis. The collected subsamples were broken apart by hand and allowed to partially dry overnight at 20°C. The following day, a portion of the moist soil was forced through a 2-mm sieve and frozen at -15°C until EPS analysis. The remaining moist soil was air dried and 50 g of 3 – 5 mm aggregates was collected for aggregate stability analysis. The remaining air-dry soil was sieved through a 2-mm sieve and stored at room temperature for organic matter content analysis (loss-on-ignition). Aggregate stability was measured following the method outlined by Le Bissonnais (1996). The EPS extraction and analysis procedures used in this study follows methods described by Redmile-Gordon et al. (2014)

Citations:

Redmile-Gordon, M. A., Brookes, P. C., Evershed, R. P., Goulding, K. W. T., & Hirsch, P. R. (2014). Measuring the soil-microbial interface: Extraction of extracellular polymeric substances (EPS) from soil biofilms. Soil Biology and Biochemistry, 72, 163–171. https://doi.org/10.1016/j.soilbio.2014.01.025

Scott, I. J. (2016). Phase-space Threshold Algorithm for Time Series Data. Researchgate. https://doi.org/10.13140/RG.2.1.1831.4325

Strom, K. B., & Papanicolaou, A. N. (2007). ADV Measurements around a Cluster Microform in a Shallow Mountain Stream. Journal of Hydraulic Engineering, 133(12), 1379–1389. https://doi.org/10.1061/(asce)0733-9429(2007)133:12(1379)

Martin, V., Fisher, T. S. R., Millar, R. G., & Quick, M. C. (2002). ADV Data Analysis for Turbulent Flows: Low Correlation Problem. Hydraulic Measurements and Experimental Methods, 770–779. https://doi.org/10.1061/40655(2002)101

Goring, D. G., & Nikora, V. I. (2002). Despiking Acoustic Doppler Velocimeter Data. Journal of Hydraulic Engineering, 128(1), 117–126. https://doi.org/10.1061/ASCE0733-94292002128:1117

Akinola, A. I., Wynn-Thompson, T., Olgun, C. G., Mostaghimi, S., & Eick, M. J. (2019). Fluvial Erosion Rate of Cohesive Streambanks Is Directly Related to the Difference in Soil and Water Temperatures. Journal of Environment Quality, 48(6), 1741. https://doi.org/10.2134/jeq2018.10.0385

Wahl, T. L. (2002). Discussion of ‘“Despiking Acoustic Doppler Velocimeter Data”’ by Derek G. Goring and Vladimir I. Nikora. International Journal of Steel Structures, 128(1), 117–126. https://doi.org/10.1007/s13296-013-2015-4

Le Bissonnais, Y. (1996). Aggregate stability and assessment of soil crustability and erodibility: I. Theory and methodology. European Journal of Soil Science, 47, 425–437. https://doi.org/10.1111/j.1365-2389.1996.tb01843.x

Instrument(s):The flume used has a maximum capacity of 5000 L and is equipped with a 328 kW pump which can drive flows of up to 70 L/s in the flume channel. Since the goal of this experiment was to simulate unvegetated streambank erosion, where detachment is the only requisite for erosion, an artificial wall built by Parks (2012) was used to simulate a vertical streambank. A curved wall was created at the upstream end of the channel to gradually transition the width of the flume from 1.0 m to 0.4 m. The artificial wall was constructed of 1.25-cm thick PVC sheets supported with a wooden frame running the entire length of the flume channel. The face of the wall was roughened over the entire length of the insert by gluing sand (Premium Play Sand No. 1113, Quickrete, Atlanta, GA; D50 = 0.15 mm, D84 = 0.3 mm) to the surface of the PVC sheets. The upstream end of the channel was equipped with a flow straightener to dissipate turbulence and develop one dimensional flow. To simulate the geometry of soil-water interactions along an eroding streambank, the soil sample was introduced into the flume channel through a circular hole in the vertical PVC wall. An acoustic doppler profiler was also used to measure 3D velocity profiles and erosion depth of soil samples. Citations: Parks, O. W. (2012). Effect of Water Temperature on Cohesive Streambank Erosion [Virginia Polytechnic Institute and State University]. http://hdl.handle.net/10919/49663

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Daniel J Smith
Organization:Virginia Tech
Position:Graduate Student
Email Address:
dsmith36@vt.edu
Id:https://orcid.org/0000-0002-6266-7754
Individual: Michael Snead
Organization:Virginia Tech
Position:Undergraduate Student
Email Address:
michael00@vt.edu
Individual: Theresa M Wynn-Thompson
Organization:Virginia Tech
Position:Associate Professor
Email Address:
tthompson@vt.edu
Web Address:
https://thompsonresearchgroup.weebly.com/
Id:https://orcid.org/0000-0003-4441-4697
Contacts:
Individual: Daniel J Smith
Organization:Virginia Tech
Position:Graduate Student
Email Address:
dsmith36@vt.edu
Id:https://orcid.org/0000-0002-6266-7754
Associated Parties:
Individual: Theresa Wynn-Thompson
Email Address:
tthompson@vt.edu
Id:https://orcid.org/0000-0003-4441-4697
Role:Faculty advisor

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2021-03-01
End:
2021-04-01
Sampling Site: 
Description:This data was collected at Virginia Tech in laboratory and flume channel settings.
Site Coordinates:
Longitude (degree): -80.423416Latitude (degree): 37.228382

Project

Parent Project Information:

Title:Impact of Organic Matter Amended Soil on Extracellular Polymeric Substances, Aggregate Stability, and Cohesive Soil Resistance to Fluvial Erosion
Personnel:
Individual: Daniel Smith
Email Address:
dsmith36@vt.edu
Id:https://orcid.org/0000-0002-6266-7754
Role:Lead author of data and accompanying paper.
Individual: Theresa Wynn-Thompson
Email Address:
tthompson@vt.edu
Id:https://orcid.org/0000-0003-4441-4697
Role:Faculty advisor.
Individual: Michael Snead
Role:Undergraduate research assistant
Abstract:

Fluvial erosion of cohesive soil is mediated by interactions between soil physical, biological, and chemical characteristics such as soil aggregate stability (AS), and extracellular polymeric substances (EPS). Given that soil organic matter (OM), particularly the labile fractions, has been shown to significantly affects AS and EPS, the goal of this experiment was to quantify the impact of OM on AS, EPS, and fluvial erosion rates of cohesive streambank soil. To do this, increasing amounts of dry and pulverized grass [0 (T0), 1 (T1), and 4 g of clippings per 100 g soil (T4)] were added to 2-mm sieved, silt loam soil. The samples (8 replicates per treatment) were allowed to mature in a greenhouse for 50 days prior to erosion testing in a flume. Following 50-days, measured EPS carbohydrates were significantly (p < 0.05) lower in T1 (324±63 µg/g) compared to T0 (388±37 µg/g) and T4 (376±44 µg/g). EPS proteins were significantly higher in T1 (108±3 µg/g) and T4 (116±16 µg/g) compared to T0 (92±2 µg/g) and positively correlated with AS. AS, measured as mean weight diameter, was 5-fold and nearly 60-fold higher for T1 and T4, respectively, as compared to T0. Similarly, the average soil erodibility coefficient of T1 and T4 was 25% and 61% lower than the erodibility of T0; however, only the reduction for T4 was significant. The data presented here underscore the important role labile OM plays in improving soil physical characteristics, biological characteristics, and increasing cohesive soil resistance to fluvial erosion in a streambank setting.

Maintenance

Maintenance:
Description:

Data was initially uploaded in October, 2021; an update was uploaded in January, 2022 fixing errors found in the EPS Proteins data column. This project is complete and additional data updates are not expected.

Frequency:notPlanned
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n        '
        |___element 'metadata'
        |     |___text '\n            '
        |     |___element 'unitList'
        |     |     |___text '\n                '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'microgramPerGram'
        |     |     |     |  \___attribute 'name' = 'microgramPerGram'
        |     |     |     |___text '\n                    '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Micro-gram of EPS per gram of dry soil'
        |     |     |     |___text '\n                '
        |     |     |___text '\n                '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'centimeterPerHourPerPascal'
        |     |     |     |  \___attribute 'name' = 'centimeterPerHourPerPascal'
        |     |     |     |___text '\n                    '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'standard units for the erodibility coefficient'
        |     |     |     |___text '\n                '
        |     |     |___text '\n                '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'unitless'
        |     |     |     |  \___attribute 'name' = 'unitless'
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        |     |     |     |___element 'description'
        |     |     |     |___text '\n                '
        |     |     |___text '\n            '
        |     |___text '\n        '
        |___text '\n    '

Additional Metadata

additionalMetadata
        |___text '\n        '
        |___element 'metadata'
        |     |___text '\n            '
        |     |___element 'emlEditor'
        |     |        \___attribute 'app' = 'ezEML'
        |     |        \___attribute 'release' = '2022.01.19'
        |     |___text '\n        '
        |___text '\n    '

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