Data Package Metadata   View Summary

Water quality and stage in Gibson Jack Creek, SE Idaho, March-October 2020

General Information
Data Package:
Local Identifier:edi.1125.1
Title:Water quality and stage in Gibson Jack Creek, SE Idaho, March-October 2020
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Diel dissolved organic matter (DOM) variation can be used to understand hydrological and biogeochemical controls on organic matter cycling. We collected high-frequency fluorescence DOM data, and additional high-frequency data that could be used to parse controls, including stage, specific conductivity, water and air temperature, dissolved oxygen, and light availability at three locations in a non-perennial reach in Gibson Jack Creek, in southeastern Idaho. Weekly grab samples were collected for water chemistry throughout the study period. Data were collected from March 2020 through October 2020.

Publication Date:2024-09-06
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2020-03-25
End:
2020-10-30

People and Organizations
Contact:Hale, Rebecca L (Smithsonian Environmental Research Center, Senior Scientist) [  email ]
Contact:Godsey, Sarah (Idaho State University) [  email ]
Creator:Hale, Rebecca L (Smithsonian Environmental Research Center, Senior Scientist)
Creator:Godsey, Sarah (Idaho State University)
Creator:Dohman, Jenna M (Montana Bureau of Mines and Geology)
Creator:Warix, Sara R (Colorado School of Mines)

Data Entities
Data Table Name:
gibsonjack_sensor_data_2020
Description:
15-min sensor data from March-Oct 2020 for three sites (DP, UP, INT) in Gibson Jack Creek, SE Idaho.
Data Table Name:
GJ_grabsamples_2020_mainsites
Description:
Grab sample water chemistry from March-Oct 2020 for five sites (UP, INT, DP, Trib, Spring) along Gibson Jack Creek, SE Idaho.
Data Table Name:
precip_2020_daily
Description:
Daily Precipitation depth from March-Oct 2020 for Gibson Jack Creek, SE Idaho
Data Table Name:
gj_2020_sitelocations
Description:
Point locations of study sites for sensor and grab samples
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1125/1/ff19596344228f6c45b887314b42beb8
Name:gibsonjack_sensor_data_2020
Description:15-min sensor data from March-Oct 2020 for three sites (DP, UP, INT) in Gibson Jack Creek, SE Idaho.
Number of Records:59971
Number of Columns:13

Table Structure
Object Name:gibsonjack_sensor_data_2020format.csv
Size:5921436 byte
Authentication:d12a88877a062682b9569bf7dae8ca6e Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 sitedatetimefdomstagedo.obsatmo.pressuredo.pctsatdo.satdefwatertemp_cspcondluxairtempflags
Column Name:site  
datetime  
fdom  
stage  
do.obs  
atmo.pressure  
do.pctsat  
do.satdef  
watertemp_c  
spcond  
lux  
airtemp  
flags  
Definition:Site nameDate and time of sensor datafluorescent dissolved organic matter concentration in parts per billion. Measured with a PME cyclops with Turner Designs fDOM fluorometer. fDOM data are temperature corrected and small data gaps (<1 hour) are filled by linear interpolation.Stream stage in cm.Dissolved oxygen concentration in mg O2/L. Measured with PME MiniDOT. Small data gaps (<1 hour) are filled by linear interpolation.Barometric pressure.dissolved oxygen (percent saturation)dissolved oxygen saturation deficit.water temperature in degrees Celcius. Measured from PME MiniDOT. Small data gaps (<1 hr) are filled by linear interpolation.specific conductivity (uS/cm). Measured using HOBO-U24-001 conductivity sensors, and conductivity data was converted to specific conductivity using sensor-specific calibrationsLight availability (LUX) above the stream surface measured using HOBO Pendant loggers.Air temperature above the stream surface (in degrees Celcius). Measured using HOBO Pendant loggers.reason code for missing data
Storage Type:string  
dateTime  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
string  
Measurement Type:nominaldateTimeratioratioratioratioratioratioratioratioratiorationominal
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeDP
DefinitionDownstream Perennial stream site
Source
Code Definition
CodeINT
DefinitionIntermittent stream site
Source
Code Definition
CodeUP
DefinitionUpstream perennial stream site
Source
FormatYYYY-MM-DD hh:mm:ss
Precision
Unitpart per billion
Typereal
Unitcentimeter
Typereal
UnitmilligramPerLiter
Typereal
Unitno data. See data flag for missing data reason.
Typereal
Unitpercent
Typereal
UnitmilligramPerLiter
Typereal
Unitcelsius
Typereal
Unitmicrosiemen/cm
Typereal
UnitLUX
Typereal
Unitcelsius
Typereal
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codefdom sensor malfunction
Definitionfdom data are missing because of a sensor malfunction.
Source
Code Definition
Codestream dry/sensor out of water
Definitionsensor data are missing because the stream was dry (no surface flow) or the sensor was out of the water due to low flow.
Source
Missing Value Code:    
CodeNA
Explno data. See data flag for missing data reason.
 
CodeNA
Explno data. See data flag for missing data reason.
CodeNA
Explno data. See data flag for missing data reason.
CodeNA
Explno data. See data flag for missing data reason.
CodeNA
Explno data. See data flag for missing data reason.
CodeNA
Explno data. See data flag for missing data reason.
CodeNA
Explno data. See data flag for missing data reason.
     
Accuracy Report:                          
Accuracy Assessment:                          
Coverage:                          
Methods:                          

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1125/1/d21fd6d85bdd5445441aa85276006ae4
Name:GJ_grabsamples_2020_mainsites
Description:Grab sample water chemistry from March-Oct 2020 for five sites (UP, INT, DP, Trib, Spring) along Gibson Jack Creek, SE Idaho.
Number of Records:180
Number of Columns:11

Table Structure
Object Name:GJ_grabsamples_2020_mainsitesformat.csv
Size:13094 byte
Authentication:18427baa53f393a0003307b37a6f783b Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 sitedatetimeCa_mg_LMg_mg_LNa_mg_LNO3_mg_LNH4_mg_LDOC_mg_LCl_mg_LTDN_mg_Lstorm
Column Name:site  
datetime  
Ca_mg_L  
Mg_mg_L  
Na_mg_L  
NO3_mg_L  
NH4_mg_L  
DOC_mg_L  
Cl_mg_L  
TDN_mg_L  
storm  
Definition:site nameDate and time of grab sample collectionCalcium concentrationmagnesium concentrationsodium concentrationnitrate-N concentration (mg N/L)ammonium-N concentration (mg NH4-N/L)dissolved organic carbon concentrationchloride concentrationtotal dissolved nitrogen concentration (mg N/L)indicates if sample was collected during a storm
Storage Type:string  
dateTime  
float  
float  
float  
float  
float  
float  
float  
float  
string  
Measurement Type:nominaldateTimeratioratioratioratioratioratioratiorationominal
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeDP
DefinitionDownstream Perennial stream site
Source
Code Definition
CodeINT
DefinitionIntermittent stream site
Source
Code Definition
CodeSpring
DefinitionSpring that emerges between INT and DP sites
Source
Code Definition
CodeTrib
DefinitionTributary that joins mainstem Gibson Jack Creek between UP and INT sites
Source
Code Definition
CodeUP
DefinitionUpstream perennial stream site
Source
FormatYYYY-MM-DD hh:mm:ss
Precision
UnitmilligramPerLiter
Typereal
UnitmilligramPerLiter
Typereal
UnitmilligramPerLiter
Typereal
UnitmilligramPerLiter
Typereal
UnitmilligramPerLiter
Typereal
UnitmilligramPerLiter
Typereal
UnitmilligramPerLiter
Typereal
UnitmilligramPerLiter
Typereal
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
Definitionsample was not collected during a storm
Source
Code Definition
Code1
DefinitionSample was collected during a storm
Source
Missing Value Code:    
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
Code<MDL
Explless than the method detection limit
CodeNA
Explnot analyzed
Code<MDL
Explless than the method detection limit
 
CodeNA
Explno data
CodeNA
Explnot analyzed
Code<MDL
Explless than the method detection limit
 
Accuracy Report:                      
Accuracy Assessment:                      
Coverage:                      
Methods:                      

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1125/1/14388a80df8c454c8b94596af204f895
Name:precip_2020_daily
Description:Daily Precipitation depth from March-Oct 2020 for Gibson Jack Creek, SE Idaho
Number of Records:206
Number of Columns:2

Table Structure
Object Name:precip_2020_daily.csv
Size:3065 byte
Authentication:cf9414a351d20d60d5c6ede75979a0e2 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 dateprecip_mm
Column Name:date  
precip_mm  
Definition:Datetotal daily precipitation depth
Storage Type:dateTime  
float  
Measurement Type:dateTimeratio
Measurement Values Domain:
FormatYYYY-MM-DD
Precision
Unitmillimeter
Typereal
Missing Value Code:    
Accuracy Report:    
Accuracy Assessment:    
Coverage:    
Methods:    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1125/1/25ee0a6325b317e96b629e036348dadf
Name:gj_2020_sitelocations
Description:Point locations of study sites for sensor and grab samples
Number of Records:5
Number of Columns:4

Table Structure
Object Name:gj_2020_sitelocations.csv
Size:625 byte
Authentication:694ead61130c1b18e3ce8e688461d85d Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 sitelatlongsite description
Column Name:site  
lat  
long  
site description  
Definition:site namelatitude in decimal degreeslongitude in decimal degreesshort description of site
Storage Type:string  
float  
float  
string  
Measurement Type:nominalratiorationominal
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeDP
DefinitionDownstream Perennial stream site
Source
Code Definition
CodeINT
DefinitionIntermittent stream site
Source
Code Definition
CodeSpring
DefinitionSpring that emerges between INT and DP sites
Source
Code Definition
CodeTrib
DefinitionTributary that joins mainstem Gibson Jack Creek between UP and INT sites
Source
Code Definition
CodeUP
DefinitionUpstream perennial stream site
Source
Unitdecimal degree
Typereal
Unitdecimal degree
Typereal
Definitiontext
Missing Value Code:        
Accuracy Report:        
Accuracy Assessment:        
Coverage:        
Methods:        

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularydissolved organic carbon, nutrients, streams, dissolved oxygen, specific conductivity, stage height, temperature, light

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Site description

This work was conducted in the Gibson Jack Creek watershed in southeastern Idaho, United States, a 16.7-sq km, steep (average watershed slope ~20°), high-relief watershed managed by the US Forest Service. The climate is characterized as semiarid, and precipitation primarily falls between fall and spring. Gibson Jack spans the rain-snow transition, with an average of 0.38 m of annual precipitation at lower elevations (~1500 m), which is primarily rainfall, and an average of 0.76 m annual precipitation at higher elevations (~2100 m), which is a mix of rain and snow (Welhan 2006). Peak streamflow occurs in spring, as the seasonal snowpack melts (Hale and Godsey 2019). North-facing slopes are vegetated primarily by Douglas fir, while south-facing slopes are vegetated with sagebrush, grasses, and juniper (Kline 1978).

Our research focused on a ~200-m perennial-intermittent-perennial stream transition along the mainstem of Gibson Jack Creek, which was the focus of a previous study of subsurface controls on stream drying (Dohman et al. 2021). We instrumented three sites along the mainstem. An upstream perennial site (UP) has a drainage area of ~13.5-km2, and is characterized by more frequent hillslope-riparian-stream connectivity, with shallow lateral flowpaths contributing the streamflow, and moderate vertical flow losses (Dohman et al. 2021). An intermittent site (INT) is ~150 m downstream of UP, with a ~15.5-sq. km drainage area. Nearly all of the intervening stream reach is intermittent and a tributary contributes additional flow ~100 m upstream of INT, leading to the jump in drainage area. INT is characterized by minimal hillslope-riparian-stream connectivity and high vertical losses, leading to stream drying (Dohman et al. 2021). This reach has been observed to dry seasonally for four years between 2018 and 2023, with drying starting any time between June and September. Complete drying is usually preceded by diel drying and rewetting cycles, during which disconnected pools form along the intermittent reach (Dohman et al. 2021). The third site is a downstream perennial reach (DP) located ~30 m downstream of a large spring, with a drainage area of ~15.5-sq km (nearly identical to INT), where streamflow resumed downstream of the intermittent reach. Flow at this perennial reach is sustained by consistent longitudinal connectivity–groundwater discharge from the spring–despite minimal lateral hillslope-riparian-stream connectivity (Dohman et al. 2021).

These three mainstem sites were instrumented with piezometers and pressure transducers to measure stage (the stream or “S” sites described in Dohman et al. (2021)), as well as water quality sensors (described below). In addition to weekly sampling at these main sites, we also collected weekly grab samples at the spring outlet and the tributary. For this paper, we focus on samples and data collected from March 25, 2020 through October 30, 2020, referred to hereafter as the 2020 field season.

In situ monitoring

We used a variety of sensors to measure water quantity and quality at 15-minute intervals during the 2020 field season at the three mainstem sites.

Fluorescent dissolved organic matter (fDOM) was measured using PME cyclops with Turner Designs cyclops-7 fluorometer (excitation at 325 nm with a 120 nm bandwidth and emission at 470 nm with 60-nm bandwidth). fDOM sensors were calibrated before deployment using 400 ppb 1,3,6,8-pyrene tetrasulfonic acid tetrasodium salt (PTSA), cleaned weekly, and any fouling interference was corrected assuming linear drift. Data were corrected for temperature using sensor-specific corrections (Watras et al. 2011). We did not measure turbidity, and therefore were not able to correct fDOM for turbidity interference. However, turbidity data from 2022 suggest that turbidity is generally low at these sites, even during snowmelt (<15 NTU), only peaking during storms, which were excluded from our analysis. Since turbidity interference is minimal at low turbidity (<14 NTU) (Downing et al. 2012), our inability to correct for turbidity interference is unlikely to have significant effects on our results.

Dissolved oxygen was measured using PME miniDOT sensors. Before deployment, sensors were calibrated in 100% saturated water by bubbling water with aquarium airstones and in 0% DO water by adding yeast. Sensors were fitted with copper antifouling plates to minimize fouling and cleaned weekly. Saturation concentrations were calculated using water temperature and local barometric pressure, and saturation deficit was calculated as the difference between saturation and actual DO concentrations (in mg O2/L).

Conductivity was measured using HOBO-U24-001 conductivity sensors, and conductivity data was converted to specific conductivity using sensor-specific calibrations (U.S. Geological Survey 2019). Local light availability (in LUX) and air temperature were measured using HOBO Pendant loggers attached horizontally to rebar within the stream channel above the stream surface.

All water quality sensors were cleaned weekly, and data were corrected for fouling drift as needed. Calibrations were checked following deployment at the end of the study period and assessed for calibration drift, which was <5% for all sensors. All sensor water quality data were inspected visually for outliers, which were removed. Small gaps in sensor data (<1 hour) were filled by linear interpolation. Longer gaps were removed from the time series (including a 22-day period from July 14, 2020 to August 3, 2020 at UP due to fDOM sensor malfunction).

Water level was measured with HOBO-U20-001 unvented pressure transducers that were suspended in fully screened piezometers installed to refusal within the stream channel and corrected for barometric pressure (installation and corrections detailed in Dohman et al. (2021)). We used stage for our analyses rather than discharge due to large uncertainties in stage-discharge relationships at these sites. This limits comparisons of magnitude of change among sites because of differences in channel geometry, but because we used stage primarily to characterize seasonal and subdaily variation within sites, our reliance on stage data is still useful.

To correct for barometric pressure for each sensor, atmospheric conditions were measured every 10 minutes at a nearby high-elevation weather station and then adjusted by 5.22 kPa to account for the elevation offset. An additional pressure offset of 0.42 kPa was required for the INT sensor because the sensor consistently reported unrealistically high pressures. This additional offset was validated by observations in the field and inferred drying and rewetting of the independent fDOM sensor. Two brief, late-season storms required further attention at site INT: sedimentation of this sensor required a daily stepwise correction of 11.5 to 6.6 cm during the 7-10 Sep storm, and then a linear trend offset of up to 24.1 cm during the 11 Oct storm. We could validate these offsets because of fDOM sensor wet/dry patterns and field observations during and following the events. Furthermore, we observed dry conditions from 21 Oct through the end of the 2020 field season during multiple visits and at the fDOM sensor, so we replaced noisy measurements from the sedimented pressure transducer at INT with no-flow (zero) values. All field observations match the recorded stage, though there are three days when the fDOM sensor records slightly earlier rewetting or later drying than expected from the pressure transducer (Sept 7, 25 and 28). A more complex correction could be applied to the Sept 7 data to correct for this offset, but the surrounding days for all three dates reproduce the wet/dry patterns to within instrument accuracy, and thus, we err on the side of parsimony in our corrections.

Dissolved organic carbon sampling

Grab samples for dissolved organic carbon (DOC) concentration were collected weekly at the three mainstem sites, as well from the tributary and the spring inputs. Samples were syringe-filtered in the field through Whatman 0.45-µm nylon filters into falcon tubes and frozen until analysis on a Shimadzu TOC/TN analyzer at Brigham Young University.

References:

Dohman, J. M., S. E. Godsey, and R. L. Hale. 2021. Three-Dimensional Subsurface Flow Path Controls on Flow Permanence. Water Resources Research 57: e2020WR028270. doi:10.1029/2020WR028270

Downing, B. D., B. A. Pellerin, B. A. Bergamaschi, J. F. Saraceno, and T. E. C. Kraus. 2012. Seeing the light: The effects of particles, dissolved materials, and temperature on in situ measurements of DOM fluorescence in rivers and streams. Limnology and Oceanography: Methods 10: 767–775. doi:10.4319/lom.2012.10.767

Hale, R. L., and S. E. Godsey. 2019. Dynamic stream network intermittence explains emergent dissolved organic carbon chemostasis in headwaters. Hydrological Processes 33: 1926–1936. doi:10.1002/hyp.13455

Kline, R. 1978. Municipal watershed management plan for West Mink and Gibson Jack creeks of the Pocatello Ranger District. Caribou National Forest Open-File Report.

U.S. Geological Survey. 2019. Chapter A6.3. Specific Conductance. 9-A6.3. 9-A6.3 U.S. Geological Survey.

Welhan, J. A. 2006. Water balance and pumping capacity of the Lower Portneuf River Valley Aquifer. Idaho Geological Survey Staff Report 06–5. 06–5.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Rebecca L Hale
Organization:Smithsonian Environmental Research Center
Position:Senior Scientist
Address:
647 Contees Wharf Rd,
Edgewater, MD
Email Address:
haler@si.edu
Id:https://orcid.org/0000-0002-3552-3691
Individual: Sarah Godsey
Organization:Idaho State University
Email Address:
godsey@isu.edu
Id:https://orcid.org/0000-0001-6529-7886
Individual: Jenna M Dohman
Organization:Montana Bureau of Mines and Geology
Email Address:
jdohman@mtech.edu
Individual: Sara R Warix
Organization:Colorado School of Mines
Email Address:
swarix@mines.edu
Contacts:
Individual: Rebecca L Hale
Organization:Smithsonian Environmental Research Center
Position:Senior Scientist
Email Address:
haler@si.edu
Id:https://orcid.org/0000-0002-3552-3691
Individual: Sarah Godsey
Organization:Idaho State University
Address:
638 E Dunn St.,
#8072,
POCATELLO, ID 83209-8072 United States
Email Address:
godsey@isu.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2020-03-25
End:
2020-10-30
Geographic Region:
Description:This research took place within the Gibson Jack Creek watershed in SE Idaho. Bounding coordinates encompass the full watershed. Sampling locations are concentrated near the outlet of the watershed.
Bounding Coordinates:
Northern:  42.798977Southern:  42.768357
Western:  -112.496544Eastern:  -112.49456

Project

Parent Project Information:

Title:Stream drying and water quality in Gibson Jack Creek, SE Idaho
Personnel:
Individual: Rebecca L Hale
Organization:Smithsonian Environmental Research Center
Email Address:
haler@si.edu
Id:https://orcid.org/0000-0002-3552-3691
Role:Principal investigator
Individual: Sarah Godsey
Organization:Idaho State University
Email Address:
godsey@isu.edu
Id:https://orcid.org/0000-0001-6529-7886
Role:Co-Principal Investigator
Additional Award Information:
Funder:National Science Foundation
Number:1935839
Title:Network-scale streamflow intermittence controls on dissolved organic carbon concentrations and processes

Maintenance

Maintenance:
Description:

This data set is complete. No updates or additions are anticipated.

Frequency:notPlanned
Other Metadata

Additional Metadata

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        |     |        \___attribute 'taxonomicCoverageExempt' = 'True'
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Additional Metadata

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Additional Metadata

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