Data Package Metadata View Summary

O. mykiss passages at the Stanislaus River weir, 2005-2024

General Information

Data Package:

Local Identifier:

edi.1183.2

Title:

O. mykiss passages at the Stanislaus River weir, 2005-2024

Alternate Identifier:

DOI PLACE HOLDER

Abstract:

The Central Valley Project Improvement Act (CVPIA) provides funds to aid the San Joaquin Basin Steelhead Collaborative and initiate a Steelhead Life-Cycle Monitoring Program. This dataset includes observations of O. mykiss in the Stanislaus River during the steelhead spawning migration period, September through May. Fish are observed at an Alaskan-style weir outfitted with a VAKI Riverwatcher fish counting device. The counting device provides visual records of upstream passing individuals that are later reviewed by an experienced biologist. During times when the counting device is offline, a continuous video feed is reviewed to provide counts and identifications of passing fish. The length of passing fish is estimated using a known body depth to length ratio derived from individuals trapped and measured at the weir. The weir also has a trap box that, when closed, allows investigators to physically capture fish for measurements, biological sample collection, and injection of a PIT tag. There is also a PIT tag antenna affixed to the weir allowing detection of PIT tagged fish. There are three datasets currently associated with this project, 1) passage data for all O. mykiss from 2005 through 2020, 2) O. mykiss that were captured and processed from the trap, and 3) PIT tag detections from the PIT antenna.

Short Name:

O. mykiss passages 2005-2024

Publication Date:

2024-08-29

For more information:
Visit:	DOI PLACE HOLDER

Time Period

Begin:

2005-01-09

End:

2024-07-31

People and Organizations
Contact:	Hellmair, Michael (FISHBIO) [ email ]
Creator:	Hellmair, Michael (FISHBIO)
Associate:	Peterson, Matt (FISHBIO, researcher)
Associate:	Fuller, Andrea (FISHBIO, principal investigator)

Data Entities
Data Table Name:	FISHBIO_RBT_weir_passages_2005_2024.csv
Description:	Weir Passage Data
Data Table Name:	FISHBIO_PIT_tag_detections_2021_2024.csv
Description:	PIT Tag Detections
Data Table Name:	FISHBIO_trapping_2022_2024.csv
Description:	Fish Trapping Info
Data Table Name:	FISHBIO_Weir_operations_log_2021_2024.csv
Description:	Weir Operations
Data Table Name:	FISHBIO_Pit_operations_log_2021_2024.csv
Description:	PIT Operations

Detailed Metadata

Data Entities

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/1183/2/a2775557bc9e72d6d4a5ab02f0bc98ad
Name:	FISHBIO_RBT_weir_passages_2005_2024.csv
Description:	Weir Passage Data
Number of Records:	643
Number of Columns:	19

Table Structure

Object Name:

FISHBIO_RBT_weir_passages_2005_2024.csv

Size:

52004 byte

Authentication:

8ad540877ae556507db3569acddcc649 Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

Column Name:

passage_date

passage_time

passage_direction

species

body_depth

length_coefficient

total_length

life_stage

count

sex

ad_clip

fish_condition

id_certainty

silhouette_quality

video_quality

video_problems1

video_problems2

vaki_trap

comments

Definition:

Date when individual was counted as passing

Time when passing fish was recorded

The direction that a fish moved through the weir

Species of fish recorded passing the weir

Depth of the body measured at insertion of the dorsal fin

Emperical coefficient used to estimate fish length

Estimated total length of fish passing through the weir

Degree of maturity of recoded fish

Count of fish passing through the weir

Sex of individual if applicable

Whether or not the adipose fin has been clipped

Condition used to indicate health of passing individual

Level of certainty in species identification

Indicator of quality of counting device silhouette based identification

Indicator of quality of video image used for identification

Indicator of problems with video monitoring

Whether individual was counted using counting device, trap, or temporary video

Any additional comments describing the passage record

Storage Type:

dateTime

string

float

string

float

string

Measurement Type:

dateTime

nominal

ratio

nominal

ratio

nominal

Measurement Values Domain:

Format	YYYY-MM-DD
Precision

Format	hh:mm:ss
Precision

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	up
Definition	Upstream passage
Source

Code Definition

Code	down
Definition	Downstream passage
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	rbt
Definition	Rainbow trout/Steelhead
Source

Code Definition

Code	no fish
Definition	Counting device was triggered by object that was not a fish
Source

Unit	millimeter
Type	natural
Min	1
Max	1000

Unit	length coefficient
Type	real
Min	0.01
Max	10

Unit	millimeter
Type	real
Min	1
Max	10000

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	j
Definition	Juvenile
Source

Code Definition

Code	1+
Definition	Age 1+
Source

Code Definition

Code	a
Definition	Adult
Source

Code Definition

Code	k
Definition	Kelt
Source

Unit	count
Type	integer
Min	-1
Max	1

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	m
Definition	Male
Source

Code Definition

Code	f
Definition	Female
Source

Code Definition

Code	unk
Definition	Sex undetermined
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	n
Definition	Adipose fin present, not clipped
Source

Code Definition

Code	y
Definition	Adipose fin clipped
Source

Code Definition

Code	unk
Definition	Status of adipose fin unknown
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	good
Definition	Individual was in good condition upon passage or release
Source

Code Definition

Code	ab
Definition	Individual had abrasions upon passage or release
Source

Code Definition

Code	fair
Definition	Fish condition is fair. There are visually descennible but non-threatening injuries or abnormalities.
Source

Code Definition

Code	l
Definition	Fish condition is low
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	p
Definition	Positive identification
Source

Code Definition

Code	vl
Definition	Identification very likely
Source

Code Definition

Code	l
Definition	Identification likely
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	good
Definition	Vaki sillouette clearly shows fish outline
Source

Code Definition

Code	fair
Definition	Vaki sillouette partially shows fish outline
Source

Code Definition

Code	poor
Definition	Vaki sillouette is very distorted
Source

Code Definition

Code	none
Definition	No Vaki sillouette available
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	good
Definition	Video image clear
Source

Code Definition

Code	fair
Definition	Video image partially obscured or low light
Source

Code Definition

Code	poor
Definition	Video image cloud and obscured or insufficient light
Source

Code Definition

Code	none
Definition	No video image available
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	db
Definition	Debris obscuring the frame
Source

Code Definition

Code	em
Definition	Equipment malfunctioning
Source

Code Definition

Code	mp
Definition	Multiple individuals passing at the same time
Source

Code Definition

Code	n/a
Definition	Not applicable, no problem
Source

Code Definition

Code	no
Definition	No passage in frame
Source

Code Definition

Code	or
Definition	Orientation of frame is misaligned
Source

Code Definition

Code	ss
Definition	Split screen problem
Source

Code Definition

Code	tb
Definition	Turbidity obscuring the frame
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	db
Definition	Debris obscuring the frame
Source

Code Definition

Code	em
Definition	Equipment malfunctioning
Source

Code Definition

Code	mp
Definition	Multiple individuals passing at the same time
Source

Code Definition

Code	n/a
Definition	Not applicable, no problem
Source

Code Definition

Code	no
Definition	No passage in frame
Source

Code Definition

Code	or
Definition	Orientation of frame is misaligned
Source

Code Definition

Code	ss
Definition	Split screen problem
Source

Code Definition

Code	tb
Definition	Turbidity obscuring the frame
Source

Definition

text

Definition

text

Missing Value Code:

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/1183/2/2475baf6e7eca3ff9539eaf4fbdad760
Name:	FISHBIO_PIT_tag_detections_2021_2024.csv
Description:	PIT Tag Detections
Number of Records:	9
Number of Columns:	11

Table Structure

Object Name:

FISHBIO_PIT_tag_detections_2021_2024.csv

Size:

1057 byte

Authentication:

44ec8d5947108244bd2af3a51448d5d9 Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

Column Name:

detection_date

time

pit_number

detected_on_multiple_days

tag_source

species

tag_date

fish_code

length_when_tagged

comments

unit_initially_tagged

Definition:

Date of PIT tag detection

Time of PIT tag detection

PIT tag number detected

If species detected on multiple days

Source of origional tag

Species of fish recorded passing the weir

date that tag was applied to fish

unique fish code of each tagged fish

length of fish when tag was applied

Any additional comments describing the passage record

Initial tag location (unit)

Storage Type:

dateTime

string

float

string

Measurement Type:

dateTime

nominal

dateTime

nominal

ratio

nominal

Measurement Values Domain:

Format	YYYY-MM-DD
Precision

Format	hh:mm:ss
Precision

Definition

text

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	yes
Definition	Species detected on multiple days
Source

Code Definition

Code	no
Definition	Species not detected on multiple days
Source

Definition

text

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	rbt
Definition	Rainbow trout/Steelhead
Source

Code Definition

Code	no fish
Definition	Counting device was triggered by object that was not a fish
Source

Format	YYYY-MM-DD
Precision	YYYY-MM-DD

Definition

text

Unit	centimeter
Type	integer
Min	300
Max	500

Definition

text

Definition

text

Missing Value Code:

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/1183/2/1af2bbd8a99b81de4b440c21de33b9a7
Name:	FISHBIO_trapping_2022_2024.csv
Description:	Fish Trapping Info
Number of Records:	12
Number of Columns:	27

Table Structure

Object Name:

FISHBIO_trapping_2022_2024.csv

Size:

2541 byte

Authentication:

65df6d1abacde02df5cdaaf52bc40cb2 Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

Column Name:

station

date

time

species

count

dead

sex

fork_length_mm

total_length_mm

depth_mm

ratio

lifestage

ad_clip

scales

genetic

recapture

sample_id

fish_condition

life_history

comments

method

weight_kg

floy_tag_number

pit_tag_number

comments_fish_condition

sample_taken

weight_lbs

Definition:

Station identifier

Date when individual was captured

Time when trap was checked

Species of captured fish

Count of individuals

Whether or not the fish is dead

Sex of individual if applicable

Body length from tip of snout to fork of caudal fin

Body length from tip of snout to tip of caudal fin

Body depth as measured by a biologist or technician (which may be used to define the custom length coefficient to estimate fish length from the body depth measurement collected by the VAKI infrared scanner)

Total length to body depth ratio

Degree of maturity of captured fish

Whether or not the adipose fin has been clipped

Indicator if scale sample was collected from individual

Indicator if genetic sample was collected from individual

Indicator of whether or not individual was already tagged

Unique sample number assigned to collected scale and tissue samples

Condition used to indicate health of individual on release

Life history of the sampled fish, as determined by the biologist or technician, if unambiguous.

Comment

Tapping method

Wet weight of captured fish

Unique floy tag number

Unique pit tag number

Comments regarding fish condition

List of biological samples taken from specimen

Wet weight of captured fish

Storage Type:

string

dateTime

string

float

string

float

string

float

Measurement Type:

nominal

dateTime

nominal

ratio

nominal

ratio

nominal

ratio

nominal

ratio

Measurement Values Domain:

Definition

text

Format	YYYY-MM-DD
Precision

Format	hh:mm:ss
Precision

Definition

text

Unit	count of individuals
Type	integer
Min	1
Max	1

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	no
Definition	Fish is not dead
Source

Code Definition

Code	yes
Definition	Fish is dead
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	f
Definition	Female
Source

Code Definition

Code	m
Definition	Male
Source

Unit	millimeter
Type	natural
Min	1
Max	100000000

Unit	millimeter
Type	natural
Min	1
Max	100000000

Unit	millimeter
Type	natural
Min	0
Max	1000

Unit	mm TL per mm Depth
Type	integer
Min	0
Max	1000

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	a
Definition	adult
Source

Code Definition

Code	1+
Definition	Age is 1+ year
Source

Code Definition

Code	k
Definition	kelt
Source

Code Definition

Code	j
Definition	juvenile
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	no
Definition	Adipose fin present, not clipped
Source

Code Definition

Code	yes
Definition	Adipose fin clipped
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	yes
Definition	Scale sample collected
Source

Code Definition

Code	no
Definition	Scale sample not collected
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	yes
Definition	Genetic sample collected
Source

Code Definition

Code	no
Definition	Genetic sample not collected
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	no
Definition	Individual did not already possess a PIT tag
Source

Code Definition

Code	yes
Definition	Individual already possess a PIT tag
Source

Definition

text

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	good
Definition	Individual was in good condition upon passage or release
Source

Definition

text

Definition

text

Definition

text

Unit	kilogram
Type	natural
Min	0.43030000000000002
Max	3.86

Definition

text

Definition

text

Definition

text

Definition

text

Unit	pound
Type	natural
Min	2.5
Max	2.66

Missing Value Code:

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/1183/2/d32008ae5d8939cec325e1e38387df1d
Name:	FISHBIO_Weir_operations_log_2021_2024.csv
Description:	Weir Operations
Number of Records:	1209
Number of Columns:	36

Table Structure

Object Name:

FISHBIO_Weir_operations_log_2021_2024.csv

Size:

205342 byte

Authentication:

02dd6ce0c613df5105a70f4d795bb72f Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

Column Name:

average_battery_voltage

average_solar_voltage

backup_camera_battery_voltage

backup_camera_connected

backup_camera_solar_amps

barrels

battery_voltage

comments

conductivity

crew_initials

dissolved_oxygen

downstream_livebox_installed

fyke_closed

fyke_open

load_usage

number_of_submerged_panels

pit_tag_reader_connected

repairs_completed

repairs_needed

reset_restart_computer

sample_date

sample_time

scanner_visibility_checked

solar_amps

solar_voltage

station

stream_gauge

trap_closed

trap_open

trapping

turbidity

vaki

velocity_downstream

velocity_upstream

water_temperature

weather

Definition:

Calculated average of voltage reported in attribute "battery_voltage"

Calculated average of voltage reported in attribute "solar_voltage"

Battery voltage level in backup camera

Determines whether or not a backup camera was connected

Amp reading for backup solar used

Determines if whether or not barrels installed on weir for additional floatation

Electronics battery voltage.

Comments about sampling

Instantaneous Conductivity in microsiemens per centimeter

The sampling crew initials

Instantaneous Dissolved Oxygen in mg/L

Presence of Downstream Livebox

Time of Fyke Closing

Time of Fyke Opening

Load usage of solar battery

Number of weir panels overtopped

Determines whether or not a PIT tag reader was connected

Repairs completed

Maintenance repairs needed

Time of computer reset/restart. The computer is rebooted after data download during most weir checks to clear the cache and prevent malfunction.

Date of sample

Time of sample

Determines whether or not visibility was checked

Solar system amps

Solar system voltage

Station identifier

Water level, in feet, at the weir stream gage

Time the trap door was closed, meaning the weir is actively trapping

Time the trap door was open, meaming the volitional passage past the weir was possible (only camera monitoring)

Indicator of trap operation

Instantaneous Turbidity in NTU

Operational Status of VAKI Riverwatcher

Instantaneous Current Velocity in Feet per Second Downstream of the Trap Box

Instantaneous Current Velocity in Feet per Second Upstream of the Trap Box

Water Temperature in Degrees F

Weather conditions

Storage Type:

float

string

float

string

float

string

dateTime

float

dateTime

string

float

string

float

dateTime

string

float

string

float

string

Measurement Type:

ratio

nominal

ratio

nominal

ratio

nominal

ratio

nominal

dateTime

ratio

nominal

dateTime

nominal

ratio

nominal

ratio

dateTime

nominal

ratio

nominal

ratio

nominal

Measurement Values Domain:

Unit	volt
Type	real
Min	0
Max	35

Unit	volt
Type	real
Min	0
Max	35

Unit	volt
Type	real
Min	0
Max	20

Definition

text

Unit	ampere
Type	real
Min	0
Max	300

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	yes
Definition	Barrels installed
Source

Code Definition

Code	no
Definition	No barrels installed
Source

Definition

text

Definition

text

Unit	microsiemensPerCentimeter
Type	real
Min	0
Max	500

Definition

text

Unit	milligramPerLiter
Type	real
Min	0.00
Max	15.00

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	yes
Definition	Yes, there is a livebox installed downstream from site
Source

Code Definition

Code	no
Definition	No, there is no livebox installed downstream from site
Source

Format	hh:mm:ss
Precision

Format	hh:mm:ss
Precision

Unit	volt
Type	real
Min	0
Max	20

Unit	number of panels
Type	integer
Min	0
Max	50

Definition

text

Definition

text

Definition

text

Format	hh:mm:ss
Precision

Format	YYYY-MM-DD
Precision

Format	hh:mm:ss
Precision

Definition

text

Unit	amps
Type	real
Min	0
Max	20

Definition

text

Definition

text

Unit	foot
Type	real
Min	0
Max	10

Format	hh:mm:ss
Precision

Format	hh:mm:ss
Precision

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	yes
Definition	Trapping
Source

Code Definition

Code	no
Definition	No trapping
Source

Unit	NTU
Type	real
Min	0
Max	110

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	yes
Definition	Vaki is operating
Source

Code Definition

Code	no
Definition	Vaki is not operating
Source

Unit	footPerSecond
Type	real
Min	0
Max	5

Unit	footPerSecond
Type	real
Min	0
Max	5

Unit	fahrenheit
Type	real
Min	0
Max	70

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	clr
Definition	Clear
Source

Code Definition

Code	cld
Definition	Cloudy
Source

Code Definition

Code	nit
Definition	Night
Source

Code Definition

Code	ran
Definition	Raining
Source

Code Definition

Code	fog
Definition	Foggy
Source

Missing Value Code:

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/1183/2/05fa608a08ab2ed1d65c9c079fe0c6d0
Name:	FISHBIO_Pit_operations_log_2021_2024.csv
Description:	PIT Operations
Number of Records:	62
Number of Columns:	4

Table Structure

Object Name:

FISHBIO_Pit_operations_log_2021_2024.csv

Size:

4561 byte

Authentication:

ba7b6f38310d56fafb9005f111c6e9a7 Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

Column Name:

date

operational_mode

description

time

Definition:

Date of operation action

Operation action

Comments describing nature of operation action

Time of operation action.

Storage Type:

dateTime

string

dateTime

Measurement Type:

dateTime

nominal

dateTime

Measurement Values Domain:

Format	YYYY-MM-DD
Precision

Definition

text

Definition

text

Format	hh:mm:ss
Precision

Missing Value Code:

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Code	NA
Expl	Data not available

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
(No thesaurus)	Stanislaus River, VAKI Riverwatcher, Alaskan-style weir, O. mykiss, Steelhead, CVPIA

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package

Description:

Weir Methods

Specific details regarding the Alaskan-style weir, VAKI Riverwatcher, and counting device sources of error are provided in the Stanislaus River Adult Steelhead Monitoring Plan submitted to USBR by FISHBIO.

Data from the VAKI Riverwatcher are downloaded and reviewed daily during the peak Chinook passage (1 Oct to 15 Dec) in order to reduce possibility of missing steelhead passages.

Biological Sample Collection

Individual O. mykiss whether steelhead or freshwater resident captured when operating the weir trap will be processed according to details described in the monitoring plan. All individuals will be scanned for a previous PIT tag, and if not present, a tag will be implanted in the individuals. Biological samples collected from all O. mykiss include scales and a small amount of caudal fin tissue (<1 cm ² ). Scales will be pulled from the dorsum near the base of the caudal fin, placed on square piece of plain white copy paper and placed in a labeled specimen envelope. Caudal fin tissue will be placed in a sample tube with 95% ethanol.

PIT Tag detections

The operational status of the PIT tag antenna will be checked daily during regular weir checks. Data from the antenna will be downloaded monthly and processed to remove indicator tag numbers.

People and Organizations

Publishers:

Organization:

Environmental Data Initiative

Email Address:

info@edirepository.org

Web Address:

https://edirepository.org

Id:

https://ror.org/0330j0z60

Creators:

Individual:

Michael Hellmair

Organization:

FISHBIO

Email Address:

michaelhellmair@fishbio.com

Contacts:

Individual:

Michael Hellmair

Organization:

FISHBIO

Email Address:

michaelhellmair@fishbio.com

Associated Parties:

Individual:

Matt Peterson

Organization:

FISHBIO

Email Address:

mattpeterson@fishbio.com

Role:

researcher

Individual:

Andrea Fuller

Organization:

FISHBIO

Email Address:

andreafuller@fishbio.com

Role:

principal investigator

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period

Begin:

2005-01-09

End:

2024-07-31

Sampling Site:

Description:

Stanislaus River approximately 53 km upstream of the San Joaquin River confluence

Site Coordinates:

Longitude (degree):

-120.9718

Latitude (degree):

37.7473

Taxonomic Range:

Classification:

Rank Name:

kingdom

Rank Value:

Animalia

Classification:

Rank Name:

phylum

Rank Value:

Chordata

Classification:

Rank Name:

class

Rank Value:

Teleostei

Classification:

Rank Name:

order

Rank Value:

Salmoniformes

Classification:

Rank Name:

family

Rank Value:

Salmonidae

Classification:

Rank Name:

genus

Rank Value:

Oncorhynchus

Classification:

Rank Name:	species
Rank Value:	Oncorhynchus mykiss
Common Name:	Steelhead Trout
Identifer:	Integrated Taxonomic Information Service (ITIS) Info for ID: 161989 (Oncorhynchus mykiss)

Project

Parent Project Information:

Title:

O. mykiss passages at the Stanislaus River weir, 2005-2024

Personnel:

Individual:

Michael Hellmair

Organization:

FISHBIO

Email Address:

michaelhellmair@fishbio.com

Role:

Project Lead

Additional Award Information:

Funder:	Tri Dam Project
Title:	Lifecycle monitoring: Stanislaus River Weir

Additional Award Information:

Funder:	USBR
Title:	Monitoring Adult Anadromous O. mykiss in the Lower San Joaquin and Stanislaus River

Maintenance

Maintenance:

Description:	ongoing
Frequency:	annually

Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n      '
        |___element 'metadata'
        |     |___text '\n         '
        |     |___element 'importedFromXML'
        |     |        \___attribute 'dateImported' = '2024-08-26'
        |     |        \___attribute 'filename' = 'edi.1183.3.xml'
        |     |        \___attribute 'taxonomicCoverageExempt' = 'True'
        |     |___text '\n      '
        |___text '\n   '

Additional Metadata

additionalMetadata
        |___text '\n      '
        |___element 'metadata'
        |     |___text '\n         '
        |     |___element 'unitList' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unitList')
        |     |     |___text '\n            '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'length coefficient'
        |     |     |     |  \___attribute 'name' = 'length coefficient'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'coefficient used to estimate length'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'count'
        |     |     |     |  \___attribute 'name' = 'count'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'count'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'count of individuals'
        |     |     |     |  \___attribute 'name' = 'count of individuals'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'count of individuals'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'mm TL per mm Depth'
        |     |     |     |  \___attribute 'name' = 'mm TL per mm Depth'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'fish total length (mm) per depth (mm)'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'microsiemensPerCentimeter'
        |     |     |     |  \___attribute 'name' = 'microsiemensPerCentimeter'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'Unit of electric conductivity'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'number of panels'
        |     |     |     |  \___attribute 'name' = 'number of panels'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'number of panels'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'amps'
        |     |     |     |  \___attribute 'name' = 'amps'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'AMPs'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'NTU'
        |     |     |     |  \___attribute 'name' = 'NTU'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'Nephlometric Turbidity Unit'
        |     |     |     |___text '\n            '
        |     |     |___text '\n         '
        |     |___text '\n      '
        |___text '\n   '

Additional Metadata

additionalMetadata
        |___text '\n      '
        |___element 'metadata'
        |     |___text '\n         '
        |     |___element 'emlEditor'
        |     |        \___attribute 'app' = 'ezEML'
        |     |        \___attribute 'release' = '2024.08.06'
        |     |___text '\n      '
        |___text '\n   '

Copyright 2024 Environmental Data Initiative. This material is based upon work supported by the National Science Foundation under grants #2223103 and #2223104. Any opinions, findings, conclusions, or recommendations expressed in the material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. Please contact us with questions, comments, or for technical assistance regarding this web site or the Environmental Data Initiative. Please read our privacy policy to know what information we collect about you and to understand your privacy rights.

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

Data Package Metadata View Summary

O. mykiss passages at the Stanislaus River weir, 2005-2024

Data Entities

Data Table

Data Table

Data Table

Data Table

Data Table

Data Package Usage Rights

Keywords

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Weir Methods

Biological Sample Collection

PIT Tag detections

People and Organizations

Temporal, Geographic and Taxonomic Coverage

Project

Parent Project Information:

Maintenance

Additional Metadata

Additional Metadata

Additional Metadata

Recently Added

Recently Updated

Data Package Metadata View Summary

O. mykiss passages at the Stanislaus River weir, 2005-2024

+/- Data Entities

Data Table

Data Table

Data Table

Data Table

Data Table

+/- Data Package Usage Rights

+/- Keywords

+/- Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Weir Methods

Biological Sample Collection

PIT Tag detections

+/- People and Organizations

+/- Temporal, Geographic and Taxonomic Coverage

+/- Project

Parent Project Information:

+/- Maintenance

+/- Additional Metadata

+/- Additional Metadata

+/- Additional Metadata

Data Entities

Data Package Usage Rights

Keywords

Methods and Protocols

People and Organizations

Temporal, Geographic and Taxonomic Coverage

Project

Maintenance

Additional Metadata

Additional Metadata

Additional Metadata