Data Package Metadata   View Summary

Seagrass growth rates and physical characteristics and measures of water temperature and salinity during a simulated green turtle grazing experiment in The Bahamas, 1999 – 2000.

General Information
Data Package:
Local Identifier:edi.1206.1
Title:Seagrass growth rates and physical characteristics and measures of water temperature and salinity during a simulated green turtle grazing experiment in The Bahamas, 1999 – 2000.
Alternate Identifier:DOI PLACE HOLDER
Abstract:
This data set contains data from an experiment in which green turtle grazing was simulated in a Thalassia testudinum seagrass meadow in The Bahamas from July 1999 until December 2000. Measurements of water temperature and salinity were collected weekly. Seagrass meadow physical characteristics--blade length, blade width, number of blades per shoot, shoot density, and leaf area index--along with growth rates (both linear growth and production) were measured at various temporal intervals. Measurements were made in each of three treatments: 1) an unclipped reference treatment (representing ungrazed seagrass) in which measurements began in July 1999, 2) an experimentally clipped treatment (representing grazing) in which measurements began in July 1999, and 3) an experimentally clipped treatment (representing grazing) in which measurements began in February 2000. Data were used to investigate relationships between water temperature and salinity on seagrass growth and physical characteristics and how these relationships are affected by green turtle grazing.
Publication Date:2022-09-01
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
1999-07-01
End:
2000-12-15

People and Organizations
Contact:Johnson, Robert A (University of Wisconsin-Madison) [  email ]
Creator:Johnson, Robert A (University of Wisconsin-Madison)
Creator:Hanes, Kathleen M (Washington University in St. Louis)
Creator:Bolten, Alan B (University of Florida)
Creator:Bjorndal, Karen A (University of Florida)

Data Entities
Data Table Name:
Seagrass aboveground biomass
Description:
Aboveground seagrass biomass data for the reference treatment, summer-initiated clipped treatment, and winter-initiated clipped treatment throughout the experiment.
Data Table Name:
Seagrass linear growth rates
Description:
Rates of linear seagrass blade growth from the reference treatment, summer-initiated clipped treatment, and winter-initiated clipped treatment during the experiment.
Data Table Name:
Seagrass production rates
Description:
Rates of seagrass production (i.e., mass growth) from the reference treatment, summer-initiated clipped treatment, and winter-initiated clipped treatment during the experiment.
Data Table Name:
Seagrass structure
Description:
Measures of seagrass blade length, blade width, shoot density, number of blades per shoot, and leaf area index from the reference treatment, summer-initiated clipped treatment, and winter-initiated clipped treatment during the experiment.
Data Table Name:
Temperature and Salinity
Description:
Weekly measures of minimum water temperature, maximum water temperature, and salinity.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1206/1/a17f55a21b34590d9aa59a8bb4c653d7
Name:Seagrass aboveground biomass
Description:Aboveground seagrass biomass data for the reference treatment, summer-initiated clipped treatment, and winter-initiated clipped treatment throughout the experiment.
Number of Records:406
Number of Columns:6

Table Structure
Object Name:Seagrass-aboveground-biomass.csv
Size:14474 byte
Authentication:ba58ad7d7265802a988ca9a11f508264 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 plottreatmentdateintervalexp_weekag_biomass
Column Name:plot  
treatment  
date  
interval  
exp_week  
ag_biomass  
Definition:Individual plot identifierThe treatment to which the given plot belongsThe date that the given sample or measurement was collectedThe ordered number of the sampling event for the given measurement (i.e., the number of times the variable has been measured up to the current measurement)Number of weeks since the start of the experiment (July 1, 1999)Aboveground seagrass biomass, as dry mass
Storage Type:float  
string  
dateTime  
float  
float  
float  
Measurement Type:rationominaldateTimeratioratioratio
Measurement Values Domain:
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codereference
DefinitionThe unclipped reference treatment, in which measurements started in July 1999.
Source
Code Definition
Codesummer
DefinitionThe summer-initiated clipped treatment, in which measurements started in July 1999.
Source
Code Definition
Codewinter
DefinitionThe winter-initiated clipped treatment, in which measurements started in February 2000.
Source
FormatYYYY-MM-DD
Precision
Unitnumber
Typeinteger
Unitnumber
Typeinteger
UnitgramPerMeterSquared
Typereal
Missing Value Code:            
Accuracy Report:            
Accuracy Assessment:            
Coverage:            
Methods:            

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1206/1/cc7aa1d4857450ce8b22d54d037eb4bc
Name:Seagrass linear growth rates
Description:Rates of linear seagrass blade growth from the reference treatment, summer-initiated clipped treatment, and winter-initiated clipped treatment during the experiment.
Number of Records:792
Number of Columns:6

Table Structure
Object Name:Seagrass-linear-growth-rates.csv
Size:28533 byte
Authentication:7e9c084a0692625e6985da04cceb78e5 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 plottreatmentdateintervalexp_weekgr_length
Column Name:plot  
treatment  
date  
interval  
exp_week  
gr_length  
Definition:Individual plot identifierThe treatment to which the given plot belongsThe date that the given sample or measurement was collectedThe ordered number of the sampling event for the given measurement (i.e., the number of times the variable has been measured up to the current measurement)Number of weeks since the start of the experiment (July 1, 1999)Seagrass linear growth rate (i.e., vertical blade growth)
Storage Type:float  
string  
dateTime  
float  
float  
float  
Measurement Type:rationominaldateTimeratioratioratio
Measurement Values Domain:
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codereference
DefinitionThe unclipped reference treatment, in which measurements started in July 1999.
Source
Code Definition
Codesummer
DefinitionThe summer-initiated clipped treatment, in which measurements started in July 1999.
Source
Code Definition
Codewinter
DefinitionThe winter-initiated clipped treatment, in which measurements started in February 2000.
Source
FormatYYYY-MM-DD
Precision
Unitnumber
Typeinteger
Unitnumber
Typeinteger
UnitmillimeterPerDay
Typereal
Missing Value Code:            
Accuracy Report:            
Accuracy Assessment:            
Coverage:            
Methods:            

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1206/1/53cd073fddb2350c7c30377fa06e9691
Name:Seagrass production rates
Description:Rates of seagrass production (i.e., mass growth) from the reference treatment, summer-initiated clipped treatment, and winter-initiated clipped treatment during the experiment.
Number of Records:792
Number of Columns:6

Table Structure
Object Name:Seagrass-production-rates.csv
Size:28837 byte
Authentication:41f4ae9a2027810e1a23992747b07481 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 plottreatmentdateintervalexp_weekgr_mass
Column Name:plot  
treatment  
date  
interval  
exp_week  
gr_mass  
Definition:Individual plot identifierThe treatment to which the given plot belongsThe date that the given sample or measurement was collectedThe ordered number of the sampling event for the given measurement (i.e., the number of times the variable has been measured up to the current measurement)Number of weeks since the start of the experiment (July 1, 1999)Rate of seagrass mass growth (i.e., production), as dry mass
Storage Type:float  
string  
dateTime  
float  
float  
float  
Measurement Type:rationominaldateTimeratioratioratio
Measurement Values Domain:
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codereference
DefinitionThe unclipped reference treatment, in which measurements started in July 1999.
Source
Code Definition
Codesummer
DefinitionThe summer-initiated clipped treatment, in which measurements started in July 1999.
Source
Code Definition
Codewinter
DefinitionThe winter-initiated clipped treatment, in which measurements started in February 2000.
Source
FormatYYYY-MM-DD
Precision
Unitnumber
Typeinteger
Unitnumber
Typeinteger
UnitgramPerMeterSquaredPerDay
Typereal
Missing Value Code:            
Accuracy Report:            
Accuracy Assessment:            
Coverage:            
Methods:            

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1206/1/4185a9c02f6d65b151b71f6286a8a8af
Name:Seagrass structure
Description:Measures of seagrass blade length, blade width, shoot density, number of blades per shoot, and leaf area index from the reference treatment, summer-initiated clipped treatment, and winter-initiated clipped treatment during the experiment.
Number of Records:1024
Number of Columns:10

Table Structure
Object Name:Seagrass-structure.csv
Size:61709 byte
Authentication:b91c432c0536f662a914956ef5b9e4b4 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 plottreatmentdateintervalexp_weekblade_lengthblade_widthshoot_densitybpslai
Column Name:plot  
treatment  
date  
interval  
exp_week  
blade_length  
blade_width  
shoot_density  
bps  
lai  
Definition:Individual plot identifierThe treatment to which the given plot belongsThe date that the given sample or measurement was collectedThe ordered number of the sampling event for the given measurement (i.e., the number of times the variable has been measured up to the current measurement)Number of weeks since the start of the experiment (July 1, 1999)Seagrass blade lengthSeagrass blade widthSeagrass shoot densityNumber of seagrass blades per shootLeaf area index
Storage Type:float  
string  
dateTime  
float  
float  
float  
float  
float  
float  
float  
Measurement Type:rationominaldateTimeratioratioratioratioratioratioratio
Measurement Values Domain:
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codereference
DefinitionThe unclipped reference treatment, in which measurements started in July 1999.
Source
Code Definition
Codesummer
DefinitionThe summer-initiated clipped treatment, in which measurements started in July 1999.
Source
Code Definition
Codewinter
DefinitionThe winter-initiated clipped treatment, in which measurements started in February 2000.
Source
FormatYYYY-MM-DD
Precision
Unitnumber
Typeinteger
Unitnumber
Typeinteger
Unitcentimeter
Typereal
Unitcentimeter
Typereal
UnitnumberPerMeterSquared
Typereal
Unitnumber
Typereal
UnitmeterSquaredPerMeterSquared
Typereal
Missing Value Code:                    
Accuracy Report:                    
Accuracy Assessment:                    
Coverage:                    
Methods:                    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1206/1/6f60da82429f4b24a92425ba0d164f9f
Name:Temperature and Salinity
Description:Weekly measures of minimum water temperature, maximum water temperature, and salinity.
Number of Records:180
Number of Columns:6

Table Structure
Object Name:Temperature-Salinity.csv
Size:6613 byte
Authentication:0425b55cae4927ccc0a1df37e9a19c2a Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 treatmentdateexp_weekmin_tempmax_tempsalinity
Column Name:treatment  
date  
exp_week  
min_temp  
max_temp  
salinity  
Definition:The treatment to which the given plot belongsThe date that the given sample or measurement was collectedNumber of weeks since the start of the experiment (July 1, 1999)Minimum water temperature measured during the preceding weekMaximum water temperature measured during the preceding weekWater column salinity measured at seagrass canopy height
Storage Type:string  
dateTime  
float  
float  
float  
float  
Measurement Type:nominaldateTimeratioratioratioratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codereference
DefinitionThe unclipped reference treatment, in which measurements started in July 1999.
Source
Code Definition
Codesummer
DefinitionThe summer-initiated clipped treatment, in which measurements started in July 1999.
Source
Code Definition
Codewinter
DefinitionThe winter-initiated clipped treatment, in which measurements started in February 2000.
Source
FormatYYYY-MM-DD
Precision
Unitnumber
Typeinteger
Unitcelsius
Typereal
Unitcelsius
Typereal
UnitpracticalSalinityUnit
Typereal
Missing Value Code:          
CodeNA
Explmissing measurement
Accuracy Report:            
Accuracy Assessment:            
Coverage:            
Methods:            

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularyseagrass, grazing, plant growth, aboveground production, leaf area index, water temperature, salinity
(No thesaurus)The Bahamas

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:
Simulated Grazing - Grazing was simulated in experimental plots (n = 20; 15 summer- and 5 winter-initiated plots) by clipping all seagrass blades within the plot area at the blade-sheath junction with scissors (Moran and Bjorndal 2005) resulting in shoot heights ~2 cm above the sediment surface. To mimic the natural grazing regime of green turtles in this region, blades were re-clipped each time mean blade length within a plot reached 5 cm (range of 12 – 37 days depending on growth conditions), and all clipped blades were collected and removed to simulate green turtle consumption and removal of seagrass biomass and nutrients (Bjorndal 1980; Ogden 1980). Rhizomes were severed around the edge of each clipped plot at the beginning of the experiment, and thereafter every 6 – 8 weeks, to prevent nutrient translocation into the plots as part of a separate experiment (Moran and Bjorndal 2007). To avoid possible edge effects from the surrounding ungrazed seagrass, all samples were collected from the inner 2 x 2 m area of plots leaving a 0.5 m wide buffer zone on all sides. This experimental regime was maintained for the 16-month duration of the experiment. (text borrowed from the associated publication: Johnson et al. 2022. Limnology and Oceanography)
Instrument(s):Scissors
Description:
Water Temperature and Salinity Measurements - Environmental temperature (minimum and maximum values) and salinity were measured weekly. Temperatures were recorded from a minimum-maximum thermometer permanently deployed at seagrass canopy height at one location within each block of plots, and thermometers were re-set each week after reading. Salinity values were measured from a water sample collected near each thermometer at seagrass canopy height using a hand-held refractometer calibrated before each use. (text borrowed from the associated publication: Johnson et al. 2022. Limnology and Oceanography)
Instrument(s):Min. - Max. Thermometer, Refractometer
Description:
Seagrass Physical Characteristic Measurements - Seagrass structural characteristics (blade length, blade width, shoot density, number of blades per shoot) were measured in all plots prior to the initiation of clipping and every two weeks thereafter. Shoot density and number of blades per shoot were measured in situ from three randomly placed 25 x 25 cm quadrats (0.0625 m2) in each plot, and blade morphometry (length and width) was measured in situ from 30 randomly selected blades in each plot. Structural characteristics were then used to calculate one-sided leaf area index (often abbreviated as LAI) (Enríquez and Pantoja-Reyes 2005)—a measure of the available photosynthetic leaf area within one square meter of meadow. (text borrowed from the associated publication: Johnson et al. 2022. Limnology and Oceanography)
Instrument(s):Quadrats
Description:
Aboveground Seagrass Biomass Measurements - Aboveground biomass was measured in all plots prior to the initiation of clipping by collecting all seagrass blades from within three randomly placed 25 x 25 cm quadrats (0.0625 m2). Biomass was measured in this same manner throughout the experiment in reference plots at two, six, eleven, and sixteen months. Following the initiation of clipping, biomass in clipped plots was measured using all blades collected from the inner 4 m2 area of each plot at each clipping event (when mean blade length reached 5 cm). For each plot, collected blades were cleaned of epiphytes and rinsed with seawater in the laboratory, and dry mass was measured after drying at 60 ℃ to constant weight. (text borrowed from the associated publication: Johnson et al. 2022. Limnology and Oceanography)
Instrument(s):Quadrats, Drying Oven
Description:
Seagrass Linear Growth Rate Measurements - Linear growth rates (i.e. vertical blade growth) were measured using different methods for clipped and reference treatments, so as to avoid repeated destructive sampling within reference plots (Moran and Bjorndal 2005). Since all blades in clipped plots were clipped at the blade-sheath junction at each clipping event, linear growth rates (mm d-1) were calculated from the measured blade length of 30 randomly selected blades from each plot at the time of clipping (since all tissue was new growth) divided by the number of days since the previous clipping event. Linear growth in reference plots was estimated using the leaf staple method (Zieman 1974) throughout the experiment at roughly two-week intervals. A staple was placed just above the blade-sheath junction in 30 randomly selected blades in each reference plot, and after roughly two weeks (mean 13 days) the new growth between the staple and the blade-sheath junction was measured and divided by the number of days since stapling. (text borrowed from the associated publication: Johnson et al. 2022. Limnology and Oceanography)
Description:
Seagrass Production Measurements - Rates of mass growth (i.e., production) were measured using different methods for clipped and reference treatments. Production (g DM m-2 d-1) in clipped plots was measured at the time of each clipping event, and the dry mass of all blades collected from the inner 4 m2 of each plot (then standardized to 1 m2) was divided by the number of days since the previous clipping event. To avoid repeated destructive sampling in reference plots, rates of production were estimated from other measured metrics using the equation: ((SD × BPS × AG × MPA)) / days where SD and BPS are shoot density and blades-per-shoot, respectively. AG is blade area growth (mm2 blade-1 d-1) and was calculated using the mean linear growth rate and blade width for each plot following each growth interval. MPA is mass per area of blade (g mm-2), which is a measure of the mass of one square millimeter of seagrass blade tissue, and can be used to estimate production when blade area growth (AG) is known. MPA was calculated for each clipped plot following clipping events using measured blade length, blade width, blades per shoot, shoot density, and aboveground biomass, and these values of MPA were used to estimate reference plot production assuming MPA to be equivalent for clipped and unclipped blades. (text borrowed from the associated publication: Johnson et al. 2022. Limnology and Oceanography)

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual:Dr. Robert A Johnson
Organization:University of Wisconsin-Madison
Email Address:
robert.a.johnson@wisc.edu
Id:https://orcid.org/0000-0003-4072-5623
Individual:Dr. Kathleen M Hanes
Organization:Washington University in St. Louis
Email Address:
khanes@wustl.edu
Individual:Dr. Alan B Bolten
Organization:University of Florida
Email Address:
abolten@ufl.edu
Id:https://orcid.org/0000-0002-4834-2742
Individual:Dr. Karen A Bjorndal
Organization:University of Florida
Email Address:
bjorndal@ufl.edu
Id:https://orcid.org/0000-0002-6286-1901
Contacts:
Individual:Dr. Robert A Johnson
Organization:University of Wisconsin-Madison
Email Address:
robert.a.johnson@wisc.edu
Id:https://orcid.org/0000-0003-4072-5623

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1999-07-01
End:
2000-12-15
Geographic Region:
Description:Lee Stocking Island, Exumas, The Bahamas
Bounding Coordinates:
Northern:  23.8448Southern:  23.6906
Western:  -76.2051Eastern:  -76.0328
Taxonomic Range:
Classification:
Rank Name:Superdomain
Rank Value:Biota
Identifer:http://www.marinespecies.org
ID: 1
Classification:
Rank Name:Kingdom
Rank Value:Plantae
Common Name:plants
Identifer:http://www.marinespecies.org
ID: 3
Classification:
Rank Name:Subkingdom
Rank Value:Viridiplantae
Identifer:http://www.marinespecies.org
ID: 368663
Classification:
Rank Name:Infrakingdom
Rank Value:Streptophyta
Identifer:http://www.marinespecies.org
ID: 536191
Classification:
Rank Name:Class
Rank Value:Magnoliopsida
Identifer:http://www.marinespecies.org
ID: 182757
Classification:
Rank Name:Superorder
Rank Value:Lilianae
Identifer:http://www.marinespecies.org
ID: 449895
Classification:
Rank Name:Order
Rank Value:Alismatales
Identifer:http://www.marinespecies.org
ID: 153491
Classification:
Rank Name:Family
Rank Value:Hydrocharitaceae
Identifer:http://www.marinespecies.org
ID: 143751
Classification:
Rank Name:Genus
Rank Value:Thalassia
Common Name:turtlegrass
Identifer:http://www.marinespecies.org
ID: 206854
Classification:
Rank Name:Species
Rank Value:Thalassia testudinum
Common Name:turtle grass
Identifer:http://www.marinespecies.org
ID: 374720

Project

Parent Project Information:

Title:Effects of green turtle grazing on seagrass ecosystems
Personnel:
Individual:Dr. Robert A Johnson
Organization:University of Wisconsin-Madison
Email Address:
robert.a.johnson@wisc.edu
Id:https://orcid.org/0000-0003-4072-5623
Role:Lead Investigator

Maintenance

Maintenance:
Description:Data collection for this project is complete, and updates are not currently planned for this data set. Please contact the corresponding author with any identified issues or questions.
Frequency:notPlanned
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'meterSquaredPerMeterSquared'
        |     |     |     |  \___attribute 'name' = 'meterSquaredPerMeterSquared'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'A measure of the available leaf surface area (units of square meters) within one square meter of substrate. In effect, this makes Leaf Area Index unitless.'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'practicalSalinityUnit'
        |     |     |     |  \___attribute 'name' = 'practicalSalinityUnit'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Practical salinity units are equivalent to units of both permil and parts per thousand (ppt). '
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'emlEditor'
        |     |        \___attribute 'app' = 'ezEML'
        |     |        \___attribute 'release' = '2022.08.24'
        |     |___text '\n    '
        |___text '\n  '

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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