Data Package Metadata   View Summary

FRAME (FoRests Among Managed Ecosystems) – Plant community and seed bank composition in forests, Philadelphia metropolitan area, USA, 2017-2019

General Information
Data Package:
Local Identifier:edi.1216.1
Title:FRAME (FoRests Among Managed Ecosystems) – Plant community and seed bank composition in forests, Philadelphia metropolitan area, USA, 2017-2019
Alternate Identifier:DOI PLACE HOLDER
Abstract:
Our study objectives were to conduct a Rosa multiflora removal experiment in three forest sites experiencing different invasion intensities and to restore native plant biodiversity while preventing secondary invasion. The study was conducted in and around Newark, DE, from 2017-2019. Data collection is complete We utilized three management strategies: invasive plant removal, removal followed by native seed addition, and removal plus native seed and mulched invasive stem addition. We investigated the similarity between seed bank species composition and existing vegetation before and after removal to assess the potential for passive restoration. Two seasons after removal, we found that simply removing rose increased native species richness, Native Floristic Quality Assessment (FQAIN), and native shrub abundance in our medium invasion site, and total species richness in our low and medium invasion sites. Compared to removal alone, native seed addition, with and without mulch addition, resulted in larger native and total species richness and FQAIN increases at all sites, larger increases in native shrub abundance and exotic species richness in our medium invasion site, and larger reductions in exotic and total shrub abundance in our low and medium invasion sites. Following removal, species similarity between seed bank and vegetation improved for all three sites. Our results indicate that removal of Rosa multiflora alone increased native plant biodiversity in the medium invasion scenario, but the seed bank may not provide a large native species pool. Additional management strategies lead to improved outcomes, especially in our most invaded forest, demonstrating the need to conduct multiple plant removal treatments across forests with varying site conditions and plant invasion intensity to improve management recommendations.
Publication Date:2022-09-13
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2017
End:
2019

People and Organizations
Contact:Moore, Eric R. (University of Delaware, Postdoctoral Researcher) [  email ]
Creator:Moore, Eric R. (University of Delaware, Postdoctoral Researcher)
Creator:D'Amico, Vincent (USDA Forest Service, Research Entomologist)
Creator:Trammell, Tara L.E. (University of Delaware, Associate Professor)

Data Entities
Data Table Name:
SeedBank_withStatus
Description:
Species composition of the soil seed bank
Data Table Name:
DetailedSpeciesInfo
Description:
Scientific and common name, unique 6-letter code, taxonomic family, growth habit, native/non-native status, wetland indicator status, and coefficient of conservatism value for each species found in three FRAME sites around Newark, DE, 2017-2019, and the soil seed bank in 2018-2019.
Data Table Name:
Abundances_long
Description:
Abundances (number of individuals for tree and herb species, number of stems for shrub species, or percent cover for fern, graminoid, and vine species) per plot, 2017-2019
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1216/1/205e0873ebf66d1a9e3edb01ed57c5f6
Name:SeedBank_withStatus
Description:Species composition of the soil seed bank
Number of Records:48
Number of Columns:6

Table Structure
Object Name:SeedBank_withStatus.csv
Size:1995 byte
Authentication:fcb8f606dc5e5031449d3ec3c6e9c251 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 ScientificNameCode6StatusLowSiteMediumSiteHighSite
Column Name:ScientificName  
Code6  
Status  
LowSite  
MediumSite  
HighSite  
Definition:Scientific name of each speciesUnique six-letter code identifying species, using first three letters of genus and first three letters of specific epithet, or SPP/SP. for species only identified to genus.Is the species native, exotic (non-native), or of unknown origin?Abundance of each species in the soil seed bank at the Low Invasion SiteAbundance of each species in the soil seed bank at the Medium Invasion SiteAbundance of each species in the soil seed bank at the High Invasion Site
Storage Type:string  
string  
string  
float  
float  
float  
Measurement Type:nominalnominalnominalratioratioratio
Measurement Values Domain:
DefinitionScientific name of each species
DefinitionUnique six-letter code identifying species, using first three letters of genus and first three letters of specific epithet, or SPP/SP. for species only identified to genus.
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codeexotic
Definitionspecies is exotic (non-native)
Source
Code Definition
Codenative
Definitionspecies is native
Source
Code Definition
Codeunknown
Definitionspecies origin is unknown; species was identified to genus and native/exotic status could not be confidently determined
Source
UnitindividualsCounted
Typeinteger
UnitindividualsCounted
Typeinteger
UnitindividualsCounted
Typeinteger
Missing Value Code:            
Accuracy Report:            
Accuracy Assessment:            
Coverage:            
Methods:            

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1216/1/6638aa26004cb51d34d26f0fc0b084cb
Name:DetailedSpeciesInfo
Description:Scientific and common name, unique 6-letter code, taxonomic family, growth habit, native/non-native status, wetland indicator status, and coefficient of conservatism value for each species found in three FRAME sites around Newark, DE, 2017-2019, and the soil seed bank in 2018-2019.
Number of Records:97
Number of Columns:10

Table Structure
Object Name:DetailedSpeciesInfo.csv
Size:7823 byte
Authentication:ece4f2218e988ed9c356391f7e86440e Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 ScientificNameCommonNameCode6FamilyGrowthGrowth6StatusWISWCC
Column Name:ScientificName  
CommonName  
Code6  
Family  
Growth  
Growth6  
Status  
WIS  
Wnum  
CC  
Definition:Scientific name of each speciesCommon name of each speciesUnique six-letter code identifying species, using first three letters of genus and first three letters of specific epithet, or SPP/SP. for species only identified to genus.Taxonomic family of each speciesForest layer in which each species typically grows, simplified from Growth6 columnLife form classification based on growth habit of each speciesIs the species native, exotic (non-native), or of unknown origin?Wetland Indicator Statusnumber indicating wetland indicator statusCoefficient of conservatism. Values range from 0-10, with 0 indicating exotic or adventive (native to the continent but not the region) species
Storage Type:string  
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float  
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Measurement Type:nominalnominalnominalnominalnominalnominalnominalnominalratioratio
Measurement Values Domain:
DefinitionScientific name of each species
DefinitionCommon name of each species
DefinitionUnique six-letter code identifying species, using first three letters of genus and first three letters of specific epithet, or SPP/SP. for species only identified to genus.
DefinitionTaxonomic family of each species
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codecover
Definitiondenotes that the species was classified as growing in the ground cover layer of the forest, and measured as percent cover per plot in the vegetation (RawAbundances) data
Source
Code Definition
Codeherb
Definitiondenotes that the species was classified as growing in the herbaceous layer of the forest, and measured as individuals per plot in the vegetation (RawAbundances) data
Source
Code Definition
Codewoody
Definitiondenotes that the species was classified as growing in the woody understory layer (shrubs and tree seedlings/saplings) of the forest, and measured as the number of stems (for shrubs) or individuals (for trees) per plot in the vegetation (RawAbundances) data
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codefern
Definitionspecies is a fern
Source
Code Definition
Codegraminoid
Definitionspecies is a graminoid (grasses, sedges, rushes)
Source
Code Definition
Codeherb
Definitionspecies is a(n) herb/forb
Source
Code Definition
Codeshrub
Definitionspecies is a shrub
Source
Code Definition
Codetree
Definitionspecies is a tree
Source
Code Definition
Codevine
Definitionspecies is a vine
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codenative
Definitionspecies is native
Source
Code Definition
Codeexotic
Definitionspecies is exotic (non-native)
Source
Code Definition
Codeunknown
Definitionspecies origin is unknown; species was identified to genus and native/exotic status could not be confidently determined
Source
DefinitionWetland Indicator Status
Unitnumber
Precision1
Typeinteger
Min-5 
Max
Unitnumber
Precision1
Typeinteger
Min
Max10 
Missing Value Code:              
CodeNaN
Explspecies was identified to genus and wetland indicator status could not be assessed
CodeNaN
Explspecies was identified to genus and wetland indicator status could not be assessed
CodeNaN
Explspecies was identified to genus and wetland indicator status could not be assessed
Accuracy Report:                    
Accuracy Assessment:                    
Coverage:                    
Methods:                    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1216/1/a51bcb214f074506c8073910f8a52311
Name:Abundances_long
Description:Abundances (number of individuals for tree and herb species, number of stems for shrub species, or percent cover for fern, graminoid, and vine species) per plot, 2017-2019
Number of Records:13104
Number of Columns:9

Table Structure
Object Name:RawCountsAll_long_forEDI.csv
Size:869255 byte
Authentication:caa5c9ef60c071f771c7d4ff42011b0e Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 YearInvasionTreatmentRepPlotIDCode.OUScientificNameOverUnder1mAbundance
Column Name:Year  
Invasion  
Treatment  
Rep  
PlotID  
Code.OU  
ScientificName  
OverUnder1m  
Abundance  
Definition:Year the species abundance data was collectedDenotes whether the observation was made at the low, medium, or high invasion siteDenotes which type of treatment plot the observation was madetreatment replicate numberUnique plot identifierUnique six-letter code identifying species, using first three letters of genus and first three letters of specific epithet (or SPP/SP. for taxa only identified to genus). For tree and shrub species, an additional ".O" or ".U" is added, indicating abundance for stems greater than or less than 1 m in height, respectivelyScientific name of each speciesFor woody stem abundances, number of individuals (herb and tree species), number of stems (shrub species), or estimate of percent cover (fern, graminoid, and vine species) in the plot
Storage Type:string  
string  
string  
float  
string  
string  
string  
string  
float  
Measurement Type:nominalnominalnominalrationominalnominalnominalnominalratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code2017
DefinitionSpecies abundances in 2017
Source
Code Definition
Code2018
DefinitionSpecies abundances in 2018
Source
Code Definition
Code2019
DefinitionSpecies abundances in 2019
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeHigh
Definitionobservation was made in the high invasion site
Source
Code Definition
CodeLow
Definitionobservation was made in the low invasion site
Source
Code Definition
CodeMedium
Definitionobservation was made in the medium invasion site
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeControl
Definitionplots in which rose was present in 2017 and was not removed throughout the course of the study
Source
Code Definition
CodeMulched
Definitionplots in which rose was present in 2017 but was removed in 2018. then native seed mix was hand sown followed by addition of chipped invasive stems as mulch
Source
Code Definition
CodeNoRose
Definitiona reference plot with little to no rose presence in 2017, located nearby (< 5 m from removal area)
Source
Code Definition
CodeRemoval
Definitionplots in which rose was present in 2017 but was removed in 2018. and no other management was performed.
Source
Code Definition
CodeSeedmix
Definitionplots in which rose was present in 2017 but was removed in 2018. then native seed mix was hand sown in plots
Source
Unitnumber
Precision1
Typereal
Min
Max
DefinitionUnique plot identifier
DefinitionUnique six-letter code identifying species, using first three letters of genus and first three letters of specific epithet (or SPP/SP. for taxa only identified to genus). For tree and shrub species, an additional ".O" or ".U" is added, indicating abundance for stems greater than or less than 1 m in height, respectively
DefinitionScientific name of each species
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codenan
Definitionnot applicable; the species is not a shrub or tree
Source
Code Definition
Codeover 1 meter
Definitionwoody stems greater than 1 m in height
Source
Code Definition
Codeunder 1 meter
Definitionwoody stems less than 1 meter in height
Source
UnitnumberPerPlot
Typereal
Min
Max
Missing Value Code:              
CodeNA
Explspecies was not a shrub or tree, and height was not measured
 
Accuracy Report:                  
Accuracy Assessment:                  
Coverage:                  
Methods:                  

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularyforest ecology, plant communities
(No thesaurus)invasive plant management, non-native plant invasion, Rosa multiflora, temperate deciduous forest, woody plant community, FRAME, Forests Among Managed Ecosystems, floristic quality assessment

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:
Vegetation sampling: In 2017, we sampled all vegetation in each treatment plot (n = 12 per site) and one reference plot (n = 1 per site) at each forest site, prior to invasive plant removal. All plots were revisited for post-removal vegetation sampling in 2018 and 2019 to assess the responses of the plant community to the various treatments. Herb and tree species were identified, and individuals counted, whereas individual stems were counted for all shrub species. For vines, graminoids (grasses and sedges), and ferns, percent ground cover was estimated since it is often difficult or impossible to determine individuals. Spring ephemeral plants were counted every year from mid-March to mid-May, and all other plants were sampled in peak growing season starting in July.
Description:
Floristic Quality Assessment: A Floristic Quality Assessment (FQA) was performed for all treatment plots at each forest site following the equation for Native FQA described in Freyman et al. (2016). The FQA relies on coefficients of conservatism (<i>C</i>), originally developed by Swink and Wilhelm (1994), which are a value between 0-10 assigned for all plant species within a given region or state. Invasive plant species, by definition, have a <i>C</i> of 0. Low FQA values represent species that are disturbance and lower quality habitat tolerant (i.e., weedy or ruderal species). High FQA values indicate plant species that occur in pristine, undisturbed, or true remnant habitat (i.e., not disturbance tolerant). Floral databases for Pennsylvania and Delaware (McAvoy 2018), which includes native status of plants and coefficients of conservatism, were accessed and downloaded from the Universal FQA Calculator (https://universalfqa.org/; Freyman et al. 2016). Seven taxa were only identified to genus and were not included in FQA calculations.
Description:
Soil Seed Bank: Soil collection for seed bank evaluation was conducted in April 2018. At each site, 10 soil cores were taken at random points along each edge (0-20 m) of the removal zone’s perimeter, with each sample taken at least 1 m away from the previous one (n = 40 cores site-1). Soil cores were collected with an 8 cm diameter soil auger to a depth of 10 cm, which is a sufficient sampling depth for capturing viable seeds in forest soils (Kostel-Hughes et al. 1998, Leckie et al. 2000, Decocq et al. 2004, Wódkiewicz and Kwiatkowska-Falińska 2010). Soil was bulked and homogenized in the field using a 5 L bucket at each forest site. Soils were transported on ice to the University of Delaware’s Fischer Greenhouse and stored at 2 °C. In preparation for the seed germination study, soils were gently sieved (4.75 mm) to remove rocks and other debris, and no seeds larger than 4.75 mm were present in the soil. The resulting sieved soil was then divided into eight flats (54 cm × 26 cm) per forest site, with 1.5 cm of soil (2.3 L flat-1) placed over 3 cm of sterile potting mix (Metromix 852, Sun Gro Horticulture, Agawam, MA 01001). In addition, 6 control flats contained an equivalent volume of sterile potting mix (4.5 L flat-1). Each tray was watered to moisten both soil and potting mix, and soils were watered every other day, or when dry to the touch, with 700-800 mL of tap water for the duration of the study. Daytime and nighttime temperature (28 °C and 26 °C, respectively) and relative humidity (50% and 60%, respectively) were set to mimic peak growing season conditions in the region. Seedlings grew until they could be identified, or until their growth impeded subsequent seedling growth. Seedlings that required longer growth for positive identification were transplanted into individual containers until identified. Specimens of each species were pressed and archived for future use. In the winter, flats were moved from the growth chamber to a covered shade house at University of Delaware Botanic Gardens. This transfer assists with physiological dormancy for species that require a second cold stratification. All flats were covered for protection from weather, potential seed predation, and wind-blown seeds. The following spring (April 2019), flats were transferred back to a growth chamber under the same environmental conditions as the previous year. After a period of two weeks with no seed germination, flats were fertilized with 800 mL of 173 ppm potassium nitrate to mimic natural N addition to soils in field conditions (Benech-Arnold et al. 2000, Decocq et al. 2004, Finch-Savage and Leubner-Metzger 2006, Beauchamp et al. 2013). After two more weeks with no germination, soils were discarded. The study concluded by July 2019.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Eric R. Moore
Organization:University of Delaware
Position:Postdoctoral Researcher
Address:
Newark, DE 19716 USA
Email Address:
ermoore@udel.edu
Id:https://orcid.org/0000-0003-2727-7029
Individual: Vincent D'Amico
Organization:USDA Forest Service
Position:Research Entomologist
Address:
Newark, DE 19716 USA
Email Address:
vincedamico@gmail.com
Id:https://orcid.org/0000-0003-2176-562x
Individual: Tara L.E. Trammell
Organization:University of Delaware
Position:Associate Professor
Address:
Newark, DE 19716 USA
Email Address:
ttram@udel.edu
Id:https://orcid.org/0000-0002-5215-4947
Contacts:
Individual: Eric R. Moore
Organization:University of Delaware
Position:Postdoctoral Researcher
Address:
Newark, DE 19716 USA
Email Address:
ermoore@udel.edu
Id:https://orcid.org/0000-0003-2727-7029
Metadata Providers:
Individual: Eric R. Moore
Organization:University of Delaware
Position:Postdoctoral Researcher
Address:
Newark, DE 19716 USA
Email Address:
ermoore@udel.edu
Id:https://orcid.org/0000-0003-2727-7029

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2017
End:
2019
Geographic Region:
Description:Newark, Delaware and Kemblesville, Pennsylvania
Bounding Coordinates:
Northern:  39.747402Southern:  39.6724
Western:  -75.844047Eastern:  -75.731482

Project

Parent Project Information:

Title:Plant community change in response to invasive shrub management
Personnel:
Individual: Vince D'Amico
Organization:USDA Forest Service
Position:Research Entomologist
Email Address:
vincedamico@gmail.com
Id:https://orcid.org/0000-0003-2176-562x
Role:Principal Investigator
Individual: Tara L.E. Trammell
Organization:University of Delaware
Position:Associate Professor
Email Address:
ttram@udel.edu
Id:https://orcid.org/0000-0002-5215-4947
Role:Principal Investigator
Individual: Eric R. Moore
Organization:University of Delaware
Position:Postdoctoral Researcher
Email Address:
ermoore@udel.edu
Id:https://orcid.org/0000-0003-2727-7029
Role:lead author, collector, and creator of data package
Additional Award Information:
Funder:United States Department of Agriculture Forest Service
Number:16-JV-11242308-122
Title:Assessing and Remediating the Effects of Invasive Shrubs in Urban Forests
Additional Award Information:
Funder:University of Delaware Research Foundation
Title: Urban Forests Predict Impact of Global Change and Plant Invasion on Future Forest Ecosystem Services
Additional Award Information:
Funder:Delaware Environmental Institute (DENIN), University of Delaware
Title:DENIN Environmental Fellowship

Maintenance

Maintenance:
Description:Data collection is complete.
Frequency:notPlanned
Other Metadata

Additional Metadata

additionalMetadata
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        |     |     |___text '\n        '
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        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'number of individuals of each species counted in the seed bank at the site'
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Additional Metadata

additionalMetadata
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        |     |        \___attribute 'app' = 'ezEML'
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