Data Package Metadata   View Summary

Soil extracellular enzyme activities in plots dominated by trees that associate with arbuscular mycorrhizal or ectomycorrhizal fungi in the N fertilized and reference watershed at the Bear Brook Watershed in Maine, USA.

General Information
Data Package:
Local Identifier:edi.122.1
Title:Soil extracellular enzyme activities in plots dominated by trees that associate with arbuscular mycorrhizal or ectomycorrhizal fungi in the N fertilized and reference watershed at the Bear Brook Watershed in Maine, USA.
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Our objective was to detect possible differences in N fertilization responses of soil extracellular enzymes in plots dominated by trees that associate with arbuscular mycorrhizal fungi (AM) or ectomycorrhizal fungi (ECM). To do this, we established a plot network of 6 AM and 6 ECM dominated (>65% diameter at breast height) 10 x 10 m plots in the lower elevation hardwood zone of both the reference and N fertilized watersheds (N=24 plots) at Bear Brook Watershed, in Maine USA. We assayed the potential activity of hydrolytic enzymes that release N (N-acetylglucosaminidase; NAG), phosphorus (acid phosphatase; AP), and simple carbon (ß-glucosidase; BG). In addition, we measured microbial allocation to complex C degrading oxidative enzymes phenol oxidase and peroxidase. The activities of these enzymes were measured separately in bulk mineral, rhizosphere, and organic horizon soils during the growing season in 2016.

Publication Date:2021-01-05

Time Period
Begin:
2017-05-01
End:
2017-09-30

People and Organizations
Contact:Carrara, Joseph E (West Virginia University) [  email ]
Creator:Carrara, Joseph E (West Virginia University)
Creator:Walter, Christopher A (West Virginia University)
Creator:Freedman, Zachary B (Department of Soil Science, University of Wisconsin-Madison)
Creator:Hostetler, Ashley N (West Virginia University)
Creator:Hawkins, Jennifer S (West Virginia University)
Creator:Fernandez, Ivan J (University of Maine, School of Forest Resources and Climate Change Institute)
Creator:Brzostek, Edward R (West Virginia University)

Data Entities
Data Table Name:
Bear Brook soil enzyme activities
Description:
Soil extracellular enzyme activities in AM and ECM dominated plots in the N fertilized and reference Watershed at Bear Brook Watershed in Maine USA as measured in 2016.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/122/1/453e739c16e7226100a3b3b66c190d53
Name:Bear Brook soil enzyme activities
Description:Soil extracellular enzyme activities in AM and ECM dominated plots in the N fertilized and reference Watershed at Bear Brook Watershed in Maine USA as measured in 2016.
Number of Records:72
Number of Columns:10

Table Structure
Object Name:BBWMenzymesopen.csv
Size:7471 bytes
Authentication:a4b79e4b97a8fdfde49798935c5f1e95 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:Watershed  
Treatment  
Mycorrhizae  
Plot  
SoilFraction  
AP  
BG  
NAG  
Peroxidase  
Phenox  
Definition:Name of the watershed the plot is inN Fertilized or Reference watershedDominant tree mycorrhizal type within each plotPlot numberSoil type wherein the enzymes were measuredActivity of the enzyme acid phosphatase (phosphorus acquiring enzyme), expressed in MicromolsPerGramDrySoilPerHourActivity of the enzyme beta-glucosidase (simple carbon acquiring enzyme), expressed in MicromolsPerGramDrySoilPerHourActivity of the enzyme n-acetylglucosaminidase (nitrogen acquiring enzyme), expressed in MicromolsPerGramDrySoilPerHourActivity of the enzyme peroxidase (complex carbon acquiring enzyme), expressed in MicromolsPerGramDrySoilPerHourActivity of the enzyme phenol oxidase (complex carbon acquiring enzyme), expressed in MicromolsPerGramDrySoilPerHour
Storage Type:string  
string  
string  
float  
string  
float  
float  
float  
float  
float  
Measurement Type:nominalnominalnominalrationominalratioratioratioratioratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeEast Bear
DefinitionEast Bear
Source
Code Definition
CodeWB
DefinitionWest Bear
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeN
DefinitionN fertilized
Source
Code Definition
CodeReference
DefinitionReference
Source
DefinitionDominant tree mycorrhizal type within each plot
Unitdimensionless
Typenatural
Min
Max24 
DefinitionSoil type wherein the enzymes were measured
UnitmicromolePerGramPerHour
Typereal
Min0.484545715 
Max6.67652212 
UnitmicromolePerGramPerHour
Typereal
Min0.13263347 
Max3.440835494 
UnitmicromolePerGramPerHour
Typereal
Min0.05810652 
Max3.030818266 
UnitmicromolePerGramPerHour
Typereal
Min0.282430349 
Max5.785556564 
UnitmicromolePerGramPerHour
Typereal
Min0.055361199 
Max5.755649296 
Missing Value Code:                    
Accuracy Report:                    
Accuracy Assessment:                    
Coverage:                    
Methods:                    

Data Package Usage Rights

This data package is released to the "public domain" under Creative Commons CC0 1.0 "No Rights Reserved" (see: https://creativecommons.org/publicdomain/zero/1.0/). It is considered professional etiquette to provide attribution of the original work if this data package is shared in whole or by individual components. A generic citation is provided for this data package on the website https://portal.edirepository.org (herein "website") in the summary metadata page. Communication (and collaboration) with the creators of this data package is recommended to prevent duplicate research or publication. This data package (and its components) is made available "as is" and with no warranty of accuracy or fitness for use. The creators of this data package and the website shall not be liable for any damages resulting from misinterpretation or misuse of the data package or its components. Periodic updates of this data package may be available from the website. Thank you.

Keywords

By Thesaurus:
(No thesaurus)nitrogen fertilization, extracellular enzymes, arbuscular mycorrhizal fungi, ectomycorrhizal fungi, Bear Brook Watershed Maine

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

In order to detect possible differences in N fertilization response between mycorrhizal types, we established a plot network of 6 AM and 6 ECM dominated (>65% diameter at breast height; Table S1) 10 x 10 m plots in the lower elevation hardwood zone of both the reference and fertilized watershed in May 2016 (N=24 plots). Tree species were similar between watersheds with AM trees represented by red maple (Acer rubrum) and sugar maple (Acer saccharum) and ECM trees represented by American beech (Fagus grandifolia), grey birch (Betula populifolia), and yellow birch (Betula alleghaniensis).

To capture variability across the growing season, we sampled soils in each plot in May, July, and September of 2016. In each plot we extracted three 10 x 10 cm organic horizon layers and homogenized them into a single sample defining this as the OH soil fraction. Next, we sampled four 5 cm diameter mineral soil cores to a depth of 15 cm beneath the OH layer and homogenized these by plot. All samples were kept on ice and transported to West Virginia University for further processing within 48-72 h. Upon return to the lab, we separated rhizosphere soil from mineral soil samples via the soil-adhesion method wherein the rhizosphere soil fraction was operationally defined as soil that remained clung to roots after modest shaking (Phillips & Fahey, 2005). After removal of roots, all soils were passed through a 2 mm sieve and stored at -80°C until further analysis.

To determine the extent to which N fertilization impacts microbial allocation to extracellular enzymes, we assayed the potential activity of hydrolytic enzymes that release N (N-acetylglucosaminidase; NAG), phosphorus (acid phosphatase; AP), and simple carbon (ß-glucosidase; BG). In addition, we measured microbial allocation to complex C degrading oxidative enzymes phenol oxidase and peroxidase. Briefly, 1g of thawed soil was homogenized in 50mM sodium acetate buffer (pH 5.0). Next, hydrolytic activities were determined using a fluorometric microplate assay (Gemini XPS, Molecular Devices, USA). with methylumbelliferone-linked substrates and oxidative enzymes using a colorimetric microplate assay (Tecan Infinite 200 Pro, Switzerland) with L-3,4-dihydroxyphenylalanine linked substrates according to Saiya-Cork et al., 2002.

Saiya-Cork KR, Sinsabaugh RL, Zak DR (2002) The effects of long term nitrogen deposition on extracellular enzyme activity in an Acer saccharum forest soil. Soil Biology and Biochemistry, 34, 1309–1315. DOI: 10.1016/S0038-0717(02)00074-3.

See protocol: https://allison.bio.uci.edu/protocols/fluorimetricenzymeprotocol.pdf

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Creators:
Individual: Joseph E Carrara
Organization:West Virginia University
Email Address:
jocarrara@mix.wvu.edu
Id:https://orcid.org/0000-0003-0597-1175
Individual: Christopher A Walter
Organization:West Virginia University
Email Address:
cwalte12@mail.wvu.edu
Individual: Zachary B Freedman
Organization:Department of Soil Science, University of Wisconsin-Madison
Email Address:
zachary.freedman@mail.wvu.edu
Individual: Ashley N Hostetler
Organization:West Virginia University
Email Address:
ahende11@mix.wvu.edu
Individual: Jennifer S Hawkins
Organization:West Virginia University
Email Address:
Jennifer.Hawkins@mail.wvu.edu
Individual: Ivan J Fernandez
Organization:University of Maine, School of Forest Resources and Climate Change Institute
Email Address:
ivanjf@maine.edu
Individual: Edward R Brzostek
Organization:West Virginia University
Email Address:
erbrzostek@mix.wvu.edu
Contacts:
Individual: Joseph E Carrara
Organization:West Virginia University
Email Address:
jocarrara@mix.wvu.edu
Id:https://orcid.org/0000-0003-0597-1175

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2017-05-01
End:
2017-09-30
Sampling Site: 
Description:Bear Brook Watershed in Maine
Site Coordinates:
Longitude (degree): -68.106971Latitude (degree): 44.861781

Project

Parent Project Information:

Title:Long-Term Research in Environmental Biology (LTREB) program
Personnel:
Individual: Ivan J Fernandez
Organization:University of Maine, School of Forest Resources and Climate Change Institute
Email Address:
ivanjf@maine.edu
Role:Principal Investigator
Funding: NSF DEB-1119709
Related Project:
Title:NSF Graduate Research Fellowship to Joseph Carrara
Personnel:
Individual: Ivan J Fernandez
Organization:University of Maine, School of Forest Resources and Climate Change Institute
Email Address:
ivanjf@maine.edu
Role:Principal Investigator
Funding: NSF DGE-1102

Maintenance

Maintenance:
Description:Completed: No updates are expected to these data
Frequency:
Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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