Data Package Metadata   View Summary

Seasonal trends in leaf level physiological parameters, obtained through gas exchange, reflectance spectroscopy and, functional trait analysis

General Information
Data Package:
Local Identifier:edi.1451.1
Title:Seasonal trends in leaf level physiological parameters, obtained through gas exchange, reflectance spectroscopy and, functional trait analysis
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package contains leaf level gas exchange, reflectance spectroscopy, and functional trait measurements collected in six common deciduous tree species across the full 2021 growth season (May -October) at the Black Rock Forest in Cornwall, New York, USA. Branches were sampled predawn using the shotgun method of branch retrieval, and re-cut under water to preserve hydraulic function before transport to the lab.

Gas exchange data included in this package are stomatal response curves (irradiance response) which can be used to estimate stomatal slope and intercept. Spectroscopic data are full-range (350 – 2500 nm) leaf reflectance spectra collected on all leaves sampled for gas exchange and traits. Leaf level trait measurements include leaf mass per area (LMA), leaf dry matter content (LDMC), elemental nitrogen and carbon expressed on a per mass basis, and fitted values of Asat, Vcmax, and Rdark scaled to a reference temperature of 25C. Data from these three data tables (stomatal responce, spectra, leaf traits) can be cross referenced using the unique SampleID.

Additional data tables include stomatal anatomy (stomatal density, length, and width of the guard cells), hydraulic properties estimated from pressure volume curves (relative water deficit at the turgor loss point), and predawn water potential for all sampled branches.

Site level data includes the dGPS location of each sampled tree, its species, and DBH.

Each tabular data file (*.csv) is accompanied by a data description (*_dd.csv) which includes relevant metadata (unit, definition, data type).

Copies of all raw instrument output (spectroradiometer, LICOR, pressure chamber) and included as .zip files.

Publication Date:2023-06-28
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2021-05-18
End:
2021-10-15

People and Organizations
Contact:Davidson, Kenneth J (Brookhaven National Lab, PhD Candidate) [  email ]
Creator:Davidson, Kenneth J (Brookhaven National Lab, PhD Candidate)
Creator:Lamour, Julien 
Creator:McPherran, Anna 
Creator:Rogers, Alistair (Brookhaven National Lab)
Creator:Serbin, Shawn P (Brookhaven National Lab)

Data Entities
Data Table Name:
Tree_Data
Description:
Information on tree locations, species, and DBH
Data Table Name:
Stomatal_Response_Curve_Data
Description:
Extracted values from stomatal response to irradiance curves
Data Table Name:
Leaf_Traits
Description:
Data on leaf physiological and functional traits. Can be linked with spectra and stomatal response curve data via SampleID, and tree data via TreeID
Data Table Name:
Stomatal_Anatomy
Description:
Information on the size and density of stomata over the 2021 growth season
Data Table Name:
Leaf_Hydraulics
Description:
Leaf hydraulic properties estimated from pressure volume curves
Data Table Name:
Predawn_WaterPotential
Description:
Predawn leaf water potential for all sampled branches
Data Table Name:
Spec_Data
Description:
Data table contains leaf reflectance spectroscopy data collected using an SVC HR-1024i spectroradiometer with a leaf clip and integrated full spectrum light source. Data provided in the table are SampleID (a unique ID to link samples to other data tables), Waveband (the spectral waveband measured in the format Wave_XXX where the numbers XXX are the wavelength in nm. e.g., Wave_350 is reflectance at 350nm ), Percent_Refl (percent reflectance of the sample at the wavelength specified by column Waveband), date (date of measurement), and Tleaf_Spec (temperature of the leaf prior to measurement).
Other Name:
Data_Descriptions
Description:
Data description (*_dd.csv) files which accompanied all tabular data and includes relevant metadata (unit, definition, data type)
Other Name:
Raw_Output_LI-6400
Description:
Raw files from the LI-6400. See LI-6400 users manual for information instrument specifications and complete data output. https://www.licor.com/env/support/LI-6400/home.html
Other Name:
Raw_Output_LI-6800
Description:
Raw files from the LI-6800. See LI-6800 users manual for information instrument specifications and complete data output. https://www.licor.com/env/products/photosynthesis/LI-6800/
Other Name:
Raw_Output_Spectra
Description:
Raw files from the spectroradiometer
Other Name:
Raw_Output_Pressure_Chamber
Description:
Raw data from the pressure chamber
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/cf7263f181646439699b34fefc88b239
Name:Tree_Data
Description:Information on tree locations, species, and DBH
Number of Records:166
Number of Columns:9

Table Structure
Object Name:Tree_Data.csv
Size:10289 byte
Authentication:e013f8847ae862aa3bb6214b196a6008 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 TreeIDUSDA_CodeCommon NameGenusSpeciesLatLongDBH_1DBH_2
Column Name:TreeID  
USDA_Code  
Common Name  
Genus  
Species  
Lat  
Long  
DBH_1  
DBH_2  
Definition:Unique Tree IdentifierUSDA Species Code <https://plants.usda.gov/home/plantProfile>Species Common NameTree GenusTree SpeciesLatitude (WGS84)Longitude (WGS84)Diameter at breast height of primary trunkDiameter at breast height of secondary trunk
Storage Type:string  
string  
string  
string  
string  
float  
float  
float  
float  
Measurement Type:nominalnominalnominalnominalnominalratioratioratioratio
Measurement Values Domain:
Definitiontext
Definitiontext
Definitiontext
Definitiontext
Definitiontext
Unitdegree
Typereal
Unitdegree
Typereal
Unitcentimeter
Typereal
Unitcentimeter
Typereal
Missing Value Code:                
CodeNA
ExplSome trees lack a second trunk
Accuracy Report:                  
Accuracy Assessment:                  
Coverage:                  
Methods:                  

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/b8c748693b0628b943ac6a62fde00f72
Name:Stomatal_Response_Curve_Data
Description:Extracted values from stomatal response to irradiance curves
Number of Records:2681
Number of Columns:13

Table Structure
Object Name:Stomatal_Response_Curve_Data.csv
Size:365623 byte
Authentication:af822850f19373ee82ac6f7813e859d8 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
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Table Column Descriptions
 SampleIDdateAgswCiQinVPDleafTairRHsTleafCO2sPatmE
Column Name:SampleID  
date  
A  
gsw  
Ci  
Qin  
VPDleaf  
Tair  
RHs  
Tleaf  
CO2s  
Patm  
E  
Definition:Sample IdentifierDate of observationNet CO₂ exchange per leaf areaStomatal conductance to water vapor per leaf areaIntercellular CO₂ concentration in airin-chamber photosynthetic flux density (PPFD) incident on the leaf, quanta per areaLeaf to air vapor pressure deficitAir temperature inside the chamberRelative humidity of air inside the chamberLeaf surface temperatureCO₂ concentration in wet air inside chamberAtmospheric pressureTranspiration rate of H₂O per leaf area
Storage Type:string  
string  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
Measurement Type:nominalnominalratioratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
Definitiontext
Definitiontext
UnitmicromolePerMeterSquaredPerSecond
Typereal
UnitmillimolPerMeterSquaredPerSecond
Typereal
UnitmicromolePerMeterSquaredPerSecond
Typereal
UnitmicromolePerMeterSquaredPerSecond
Typeinteger
Unitkilopascal
Typereal
Unitdegree
Typereal
Unitpercent
Typereal
Unitdegree
Typereal
UnitmicromolePerMeterSquaredPerSecond
Typereal
Unitkilopascal
Typereal
UnitmillimolPerMeterSquaredPerSecond
Typereal
Missing Value Code:                          
Accuracy Report:                          
Accuracy Assessment:                          
Coverage:                          
Methods:                          

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/a6516c27b6597a96d8645bebe596850e
Name:Leaf_Traits
Description:Data on leaf physiological and functional traits. Can be linked with spectra and stomatal response curve data via SampleID, and tree data via TreeID
Number of Records:240
Number of Columns:16

Table Structure
Object Name:Leaf_Trait_Data.csv
Size:40202 byte
Authentication:b52a7940caface9987feaf04a7221fc4 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
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Table Column Descriptions
 SampleIDdateTreeIDUSDA_CodeNaCaC_NLMALDMCT_AsatAsatVcmax25VcmaxT_RdarkRdark25Rdark
Column Name:SampleID  
date  
TreeID  
USDA_Code  
Na  
Ca  
C_N  
LMA  
LDMC  
T_Asat  
Asat  
Vcmax25  
Vcmax  
T_Rdark  
Rdark25  
Rdark  
Definition:Sample IdentifierDate of observationUnique Tree IdentifierUSDA Species Code <https://plants.usda.gov/home/plantProfile>Elemental nitrogen per unit areaElemental carbon per unit areaRatio of elemental carbon to elemental nitrogenLeaf mass per unit areaLeaf dry matter content per unit massLeaf surface temperature for Asat and Vcmax estimatesHighest rate of light saturated A at ambient CO₂ concentrationMaximum rate of carboxylation, at the reference temperature 25°C, calculated assuming infinite mesophyl conductance, i.e. apparent VcmaxMaximum rate of carboxylation at measurement temperature, calculated assuming infinite mesophyll conductance, i.e. apparent VcmaxLeaf surface temperature for Rdark estimatesCO₂ release from the leaf in the dark, at the reference temperature of 25°C, reported as a positive valueCO₂ release from the leaf in the dark, at measurement temperature, reported as a positive value
Storage Type:string  
dateTime  
string  
string  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
Measurement Type:nominaldateTimenominalnominalratioratioratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
Definitiontext
FormatYYYYMMDD
Precision
Definitiontext
Definitiontext
UnitmilligramPerMeterSquared
Typereal
UnitmilligramPerMeterSquared
Typereal
Unitratio
Typereal
UnitgramPerMeterSquared
Typereal
UnitgramPerGram
Typereal
Unitdegree
Typereal
UnitmicromolePerMeterSquaredPerSecond
Typereal
UnitmicromolePerMeterSquaredPerSecond
Typereal
UnitmicromolePerMeterSquaredPerSecond
Typereal
Unitdegree
Typereal
UnitmicromolePerMeterSquaredPerSecond
Typereal
UnitmicromolePerMeterSquaredPerSecond
Typereal
Missing Value Code:    
CodeNA
ExplNo data
 
CodeNA
ExplNo data
CodeNA
ExplNo data
CodeNA
ExplNo Data
           
CodeNA
ExplNo Data
CodeNA
ExplNo Data
CodeNA
ExplNo Data
Accuracy Report:                                
Accuracy Assessment:                                
Coverage:                                
Methods:                                

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/f475851b4c80e3aa4bf7259503b3acb7
Name:Stomatal_Anatomy
Description:Information on the size and density of stomata over the 2021 growth season
Number of Records:777
Number of Columns:9

Table Structure
Object Name:Stomatal_Anatomy.csv
Size:49373 byte
Authentication:aa456138d4d12cb885d1148381f9696c Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 dateUSDA_CodeDensityLength_1Width_1Length_2Width_2Length_3Width_3
Column Name:date  
USDA_Code  
Density  
Length_1  
Width_1  
Length_2  
Width_2  
Length_3  
Width_3  
Definition:date of observationUSDA Species Code <https://plants.usda.gov/home/plantProfile>density of stomataLength of guard cellWidth of guard cellLength of guard cellWidth of guard cellLength of guard cellWidth of guard cell
Storage Type:dateTime  
string  
float  
float  
float  
float  
float  
float  
float  
Measurement Type:dateTimenominalratioratioratioratioratioratioratio
Measurement Values Domain:
FormatYYYYMMDD
Precision
Definitiontext
UnitnumberPerSquaremm
Typereal
Unitmillimeter
Typereal
Unitmillimeter
Typereal
Unitmillimeter
Typereal
Unitmillimeter
Typereal
Unitmillimeter
Typereal
Unitmillimeter
Typereal
Missing Value Code:                  
Accuracy Report:                  
Accuracy Assessment:                  
Coverage:                  
Methods:                  

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/27293bb84b36d51b83c3a4b80746496e
Name:Leaf_Hydraulics
Description:Leaf hydraulic properties estimated from pressure volume curves
Number of Records:144
Number of Columns:5

Table Structure
Object Name:Leaf_Hydraulics.csv
Size:5723 byte
Authentication:157888f1f8a556960c905f48d405ac82 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 SampleIDdateTreeIDUSDA_CodeRWD_TLP
Column Name:SampleID  
date  
TreeID  
USDA_Code  
RWD_TLP  
Definition:Sample IdentifierDate of observationUnique Tree IdentifierUSDA Species Code <https://plants.usda.gov/home/plantProfile>Reletive water deficit at the point of turgor loss
Storage Type:string  
dateTime  
string  
string  
float  
Measurement Type:nominaldateTimenominalnominalratio
Measurement Values Domain:
Definitiontext
FormatYYYYMMDD
Precision
Definitiontext
Definitiontext
Unitpercent
Typereal
Missing Value Code:          
Accuracy Report:          
Accuracy Assessment:          
Coverage:          
Methods:          

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/b32c49b2ffc7633bf0d569cb593471a8
Name:Predawn_WaterPotential
Description:Predawn leaf water potential for all sampled branches
Number of Records:212
Number of Columns:5

Table Structure
Object Name:Predawn_WaterPotential.csv
Size:6321 byte
Authentication:99373d5da0c2bd0a6844c5e99e55c314 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 SampleIDDateTreeIDUSDA_CodePredawn_LWP
Column Name:SampleID  
Date  
TreeID  
USDA_Code  
Predawn_LWP  
Definition:Sample IdentifierDate of observationUnique Tree IdentifierUSDA Species Code <https://plants.usda.gov/home/plantProfile>Leaf water potintial
Storage Type:string  
dateTime  
string  
string  
float  
Measurement Type:nominaldateTimenominalnominalratio
Measurement Values Domain:
Definitiontext
FormatYYYYMMDD
Precision
Definitiontext
Definitiontext
Unitmegapascal
Typereal
Missing Value Code:          
Accuracy Report:          
Accuracy Assessment:          
Coverage:          
Methods:          

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/3d1242cc2f387b0f295739cb6be89633
Name:Spec_Data
Description:Data table contains leaf reflectance spectroscopy data collected using an SVC HR-1024i spectroradiometer with a leaf clip and integrated full spectrum light source. Data provided in the table are SampleID (a unique ID to link samples to other data tables), Waveband (the spectral waveband measured in the format Wave_XXX where the numbers XXX are the wavelength in nm. e.g., Wave_350 is reflectance at 350nm ), Percent_Refl (percent reflectance of the sample at the wavelength specified by column Waveband), date (date of measurement), and Tleaf_Spec (temperature of the leaf prior to measurement).
Number of Records:1948806
Number of Columns:5

Table Structure
Object Name:Spec_Data_Long.csv
Size:93901886 byte
Authentication:5ca35d15f31f356c5b626941d0fe719f Calculated By MD5
Text Format:
Number of Header Lines:1
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Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 SampleIDWavebandPercent_RefldateTleaf_Spec
Column Name:SampleID  
Waveband  
Percent_Refl  
date  
Tleaf_Spec  
Definition:Unique ID to link samples to other data tablesSpectral waveband measured. Format is Wave_XXX where the numbers XXX are the wavelength in nmPercent reflectance of the sample at the wavelength specified by column Wavebanddate of measurementtemperature of the leaf prior to measurement
Storage Type:string  
string  
float  
float  
float  
Measurement Type:nominalnominalratioratioratio
Measurement Values Domain:
Definitiontext
Definitiontext
Unitpercent
Typereal
UnitYYYYMMDD
Typeinteger
Unitcelsius
Typereal
Missing Value Code:          
Accuracy Report:          
Accuracy Assessment:          
Coverage:          
Methods:          

Non-Categorized Data Resource

Name:Data_Descriptions
Entity Type:zip
Description:Data description (*_dd.csv) files which accompanied all tabular data and includes relevant metadata (unit, definition, data type)
Physical Structure Description:
Object Name:Data_Descriptions.zip
Size:14643 byte
Authentication:33604f25087ef63450cd3153d2ccbcc3 Calculated By MD5
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Format Name:zip
Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/1ba5fdc2a56a3449820f063f08dfd140

Non-Categorized Data Resource

Name:Raw_Output_LI-6400
Entity Type:zip
Description:Raw files from the LI-6400. See LI-6400 users manual for information instrument specifications and complete data output. https://www.licor.com/env/support/LI-6400/home.html
Physical Structure Description:
Object Name:Raw_Output_LI-6400.zip
Size:47982741 byte
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Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/cf77a6ed02fffbaa92a50ba375a25de1

Non-Categorized Data Resource

Name:Raw_Output_LI-6800
Entity Type:zip
Description:Raw files from the LI-6800. See LI-6800 users manual for information instrument specifications and complete data output. https://www.licor.com/env/products/photosynthesis/LI-6800/
Physical Structure Description:
Object Name:Raw_Output_LI-6800.zip
Size:426608954 byte
Authentication:33794bd1b9a345502491fc966178b617 Calculated By MD5
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Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/f14b1cc2ddc3cec41300c192f95e8cee

Non-Categorized Data Resource

Name:Raw_Output_Spectra
Entity Type:zip
Description:Raw files from the spectroradiometer
Physical Structure Description:
Object Name:Raw_Output_Spectra.zip
Size:46398224 byte
Authentication:d228b2a6a4ebc56602481a1f2176cee0 Calculated By MD5
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Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/dffbf27d96192119ed86cb8a55ac0d93

Non-Categorized Data Resource

Name:Raw_Output_Pressure_Chamber
Entity Type:zip
Description:Raw data from the pressure chamber
Physical Structure Description:
Object Name:Raw_Output_Pressure_Chamber.zip
Size:12266 byte
Authentication:a9ec62a7ba034dd1515e3c6fa9fcce13 Calculated By MD5
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Data:https://pasta-s.lternet.edu/package/data/eml/edi/1451/1/831aa019ff77291b35348c5a2109e825

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
(No thesaurus)Stomatal conductance, Photosynthesis , Functional traits, Seasonality , Leaf hydraulics, Ontogeny, Deciduous forest , Spectroscopy, Stomatal slope, Vcmax, Stomata

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Sample collection:

All data in this package were collected at the Black Rock Forest (BRF) in Cornwall, NY (41.39, -74.027; https://www.blackrockforest.org). BRF receives an average of 1.2 m of precipitation per growing season, and has a mean growing season temperature of 23.4°C.

We collected branches predawn using a 12-gauge shotgun and steel bird shot. After branches were removed from the upper canopy, we immediately recut them (at least 20 cm) under water to prevent cavitation or embolism of the xylem. Subsequently, multiple smaller cuts (5-15 cm) were made to progressively ease xylem tension before the branches were transported to a nearby lab for analysis.

Gas exchange:

Gas exchange was performed using three LI-6800 and two LI-6400XT portable photosynthesis systems (LI-COR Inc., Lincoln, NE, USA). We conducted stomatal response curves by adjusting irradiance to propagate changes in photosynthesis, while maintaining a constant level of sample CO2 concentration and VPDleaf for the length of the curve. Leaf temperature for each curve ranged from 24-27ºC, and VPDleaf ranged between 0.8 and 1.4 kPa. Irradiance levels measured during each curve were 1500, 900, 700, 450, 250, 175, 90, 40, 20, 0 μmol m-2 s-1.

Parameters estimated from response curves included stomatal slope (g1), stomatal intercept (g0), minimum stomatal conductance (gsmin), the maximum carboxylation rate of rubisco (Vcmax), and the dark respiration rate (Rdark). Stomatal parameters were estimated using the Unified Stomatal Optimization model (USO, Medlyn et al., 2011, doi: 10.1111/j.1365-2486.2010.02375.x). Vcmax was estimated using the “one-point method” (De Kauwe et al., 2016, doi: 10.1111/nph.13815). Rdark was calculated from dark-adapted measurements of photosynthesis.

Both Vcmax and Rdark were normalized to 25°C. We calculated Vcmax.25 from Vcmax using a modified Arrhenius equation (Leuning, 2002 doi: 10.1046/j.1365-3040.2002.00898.x). We calculated Rdark.25 from Rdark using an inverse Arrhenius equation (Bernacchi et al., 2001 doi: 10.1111/j.1365-3040.2001.00668.x).

Functional Traits:

Multiple leaf discs of a known area were weighed then dried to a constant mass in a 60ºC oven. After drying they were again weighed to obtain dry mass. Using these data we estimated LMA (dry mass/leaf area) and leaf dry matter content (LDMC; dry mass/fresh mass). A subset of the dried leaf samples were ground, and elemental nitrogen and carbon was quantified using a 2400 Series II CHN analyzer (PerkinElmer, Waltham, MA, USA) to estimate nitrogen as expressed on an area and mass basis (Narea, Nmass).

Leaf hydraulics:

After branch collection, a single leaf per branch was removed at the base of the petiole, and sealed in an airtight, humid, cool, dark box for transport to the laboratory. We then quantified leaf water potential (Ψleaf) using a Scholander type pressure chamber (Scholander et al., 1964).

We also collected pressure-volume (PV) curves following the method of Bartlett et al., (2012, doi: 10.1111/j.1461-0248.2012.01751.x). The relationship between Ψleaf and relative water content was assessed using the R package ‘pvldcurve’ (v 1.2.6; Raesch, 2020, https://cran.r-project.org/web/packages/pvldcurve/index.html). This analysis enabled us to estimate the turgor loss point (ΨTLP), relative water deficit at the turgor loss point (RWDTLP, %), and the bulk elastic modulus (ε).

Stomatal anatomy:

We obtained impressions of the abaxial side of two leaves per branch sample using clear varnish. Then using a stage microscope with a digital camera attachment (Nikon ECLIPSE Ci/Ni, Tokyo, Japan) at 400x magnification we collected images of these impressions. These images allowed us to estimate stomatal density (number of stomata per mm2) and stomatal area, (length x width of the guard cells).

Reflectance spectroscopy:

We used a full-range spectroradiometer (HR-1024i; Spectra Vista Corporation, Spectra Vista Corp., Poughkeepsie, NY, USA) together with an LC-RPPro leaf clip foreoptic containing an internal, full-spectrum calibrated light source to measure leaf reflectance. Before each spectra was collected we measured leaf temperature using an MI-210 Infrared Radiometer (Apogee Instruments, Inc., Logan, UT, USA).

Instrument(s):LI-6400XT, LI-6800, Scholander type pressure chamber, stage microscope, HR-1024i spectroradiometer, MI-210 Infrared Radiometer

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Kenneth J Davidson
Organization:Brookhaven National Lab
Position:PhD Candidate
Email Address:
kdavidson.sci@gmail.com
Id:https://orcid.org/0000-0001-5745-9689
Individual: Julien Lamour
Email Address:
jlamour.sci@gmail.com
Id:https://orcid.org/0000-0002-4410-507X
Individual: Anna McPherran
Email Address:
anna.mcpherran@gmail.com
Id:https://orcid.org/0000-0001-8157-7642
Individual: Alistair Rogers
Organization:Brookhaven National Lab
Email Address:
arogers@bnl.gov
Id:https://orcid.org/0000-0001-9262-7430
Individual: Shawn P Serbin
Organization:Brookhaven National Lab
Email Address:
sserbin@bnl.gov
Id:https://orcid.org/0000-0003-4136-8971
Contacts:
Individual: Kenneth J Davidson
Organization:Brookhaven National Lab
Position:PhD Candidate
Email Address:
kdavidson@bnl.gov
Id:https://orcid.org/0000-0001-5745-9689

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2021-05-18
End:
2021-10-15
Geographic Region:
Description:Black Rock Forest, Cornwall, New York, USA
Bounding Coordinates:
Northern:  41.414982Southern:  41.387353
Western:  -74.036233Eastern:  -74.000914
Taxonomic Range:
Classification:
Rank Name:Kingdom
Rank Value:Plantae
Common Name:plants
Identifer:https://www.itis.gov
ID: 202422
Classification:
Rank Name:Subkingdom
Rank Value:Viridiplantae
Common Name:green plants
Identifer:https://www.itis.gov
ID: 954898
Classification:
Rank Name:Infrakingdom
Rank Value:Streptophyta
Common Name:land plants
Identifer:https://www.itis.gov
ID: 846494
Classification:
Rank Name:Division
Rank Value:Tracheophyta
Common Name:vascular plants
Identifer:https://www.itis.gov
ID: 846496
Classification:
Rank Name:Subdivision
Rank Value:Spermatophytina
Common Name:spermatophytes
Identifer:https://www.itis.gov
ID: 846504
Classification:
Rank Name:Class
Rank Value:Magnoliopsida
Identifer:https://www.itis.gov
ID: 18063
Classification:
Rank Name:Superorder
Rank Value:Rosanae
Identifer:https://www.itis.gov
ID: 846548
Classification:
Rank Name:Order
Rank Value:Fagales
Identifer:https://www.itis.gov
ID: 19273
Classification:
Rank Name:Family
Rank Value:Betulaceae
Common Name:alder
Identifer:https://www.itis.gov
ID: 19465
Classification:
Rank Name:Genus
Rank Value:Betula
Common Name:birch
Identifer:https://www.itis.gov
ID: 19478
Classification:
Rank Name:Species
Rank Value:Betula alleghaniensis
Common Name:yellow birch
Identifer:https://www.itis.gov
ID: 19481
Taxonomic Range:
Classification:
Rank Name:Kingdom
Rank Value:Viridiplantae
Common Name:green plants
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 33090 (Viridiplantae)
Classification:
Rank Name:Phylum
Rank Value:Streptophyta
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 35493 (Streptophyta)
Classification:
Rank Name:Subphylum
Rank Value:Streptophytina
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 131221 (Streptophytina)
Classification:
Rank Name:Class
Rank Value:Magnoliopsida
Common Name:flowering plants
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 3398 (Magnoliopsida)
Classification:
Rank Name:Order
Rank Value:Sapindales
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 41937 (Sapindales)
Classification:
Rank Name:Family
Rank Value:Sapindaceae
Common Name:soapberry family
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 23672 (Sapindaceae)
Classification:
Rank Name:Subfamily
Rank Value:Hippocastanoideae
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 1977916 (Hippocastanoideae)
Classification:
Rank Name:Genus
Rank Value:Acer
Common Name:maple trees
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 4022 (Acer)
Classification:
Rank Name:Species
Rank Value:Acer rubrum
Common Name:red maple
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 45314 (Acer rubrum)
Taxonomic Range:
Classification:
Rank Name:Kingdom
Rank Value:Viridiplantae
Common Name:green plants
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 33090 (Viridiplantae)
Classification:
Rank Name:Phylum
Rank Value:Streptophyta
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 35493 (Streptophyta)
Classification:
Rank Name:Subphylum
Rank Value:Streptophytina
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 131221 (Streptophytina)
Classification:
Rank Name:Class
Rank Value:Magnoliopsida
Common Name:flowering plants
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 3398 (Magnoliopsida)
Classification:
Rank Name:Order
Rank Value:Sapindales
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 41937 (Sapindales)
Classification:
Rank Name:Family
Rank Value:Sapindaceae
Common Name:soapberry family
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 23672 (Sapindaceae)
Classification:
Rank Name:Subfamily
Rank Value:Hippocastanoideae
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 1977916 (Hippocastanoideae)
Classification:
Rank Name:Genus
Rank Value:Acer
Common Name:maple trees
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 4022 (Acer)
Classification:
Rank Name:Species
Rank Value:Acer saccharum
Common Name:sugar maple
Identifer:National Center for Biotechnology Information - Taxonomy (NCBI)
Info for ID: 4024 (Acer saccharum)
Taxonomic Range:
Classification:
Rank Name:Kingdom
Rank Value:Plantae
Common Name:plants
Identifer:https://www.itis.gov
ID: 202422
Classification:
Rank Name:Subkingdom
Rank Value:Viridiplantae
Common Name:green plants
Identifer:https://www.itis.gov
ID: 954898
Classification:
Rank Name:Infrakingdom
Rank Value:Streptophyta
Common Name:land plants
Identifer:https://www.itis.gov
ID: 846494
Classification:
Rank Name:Division
Rank Value:Tracheophyta
Common Name:vascular plants
Identifer:https://www.itis.gov
ID: 846496
Classification:
Rank Name:Subdivision
Rank Value:Spermatophytina
Common Name:spermatophytes
Identifer:https://www.itis.gov
ID: 846504
Classification:
Rank Name:Class
Rank Value:Magnoliopsida
Identifer:https://www.itis.gov
ID: 18063
Classification:
Rank Name:Superorder
Rank Value:Rosanae
Identifer:https://www.itis.gov
ID: 846548
Classification:
Rank Name:Order
Rank Value:Fagales
Identifer:https://www.itis.gov
ID: 19273
Classification:
Rank Name:Family
Rank Value:Fagaceae
Identifer:https://www.itis.gov
ID: 19275
Classification:
Rank Name:Genus
Rank Value:Quercus
Common Name:oak
Identifer:https://www.itis.gov
ID: 19276
Classification:
Rank Name:Species
Rank Value:Quercus alba
Common Name:white oak
Identifer:https://www.itis.gov
ID: 19290
Taxonomic Range:
Classification:
Rank Name:Kingdom
Rank Value:Plantae
Common Name:plants
Identifer:https://www.itis.gov
ID: 202422
Classification:
Rank Name:Subkingdom
Rank Value:Viridiplantae
Common Name:green plants
Identifer:https://www.itis.gov
ID: 954898
Classification:
Rank Name:Infrakingdom
Rank Value:Streptophyta
Common Name:land plants
Identifer:https://www.itis.gov
ID: 846494
Classification:
Rank Name:Division
Rank Value:Tracheophyta
Common Name:vascular plants
Identifer:https://www.itis.gov
ID: 846496
Classification:
Rank Name:Subdivision
Rank Value:Spermatophytina
Common Name:spermatophytes
Identifer:https://www.itis.gov
ID: 846504
Classification:
Rank Name:Class
Rank Value:Magnoliopsida
Identifer:https://www.itis.gov
ID: 18063
Classification:
Rank Name:Superorder
Rank Value:Rosanae
Identifer:https://www.itis.gov
ID: 846548
Classification:
Rank Name:Order
Rank Value:Fagales
Identifer:https://www.itis.gov
ID: 19273
Classification:
Rank Name:Family
Rank Value:Fagaceae
Identifer:https://www.itis.gov
ID: 19275
Classification:
Rank Name:Genus
Rank Value:Quercus
Common Name:oak
Identifer:https://www.itis.gov
ID: 19276
Classification:
Rank Name:Species
Rank Value:Quercus montana
Common Name:chestnut oak
Identifer:https://www.itis.gov
ID: 19379
Taxonomic Range:
Classification:
Rank Name:Kingdom
Rank Value:Plantae
Common Name:plants
Identifer:https://www.itis.gov
ID: 202422
Classification:
Rank Name:Subkingdom
Rank Value:Viridiplantae
Common Name:green plants
Identifer:https://www.itis.gov
ID: 954898
Classification:
Rank Name:Infrakingdom
Rank Value:Streptophyta
Common Name:land plants
Identifer:https://www.itis.gov
ID: 846494
Classification:
Rank Name:Division
Rank Value:Tracheophyta
Common Name:vascular plants
Identifer:https://www.itis.gov
ID: 846496
Classification:
Rank Name:Subdivision
Rank Value:Spermatophytina
Common Name:spermatophytes
Identifer:https://www.itis.gov
ID: 846504
Classification:
Rank Name:Class
Rank Value:Magnoliopsida
Identifer:https://www.itis.gov
ID: 18063
Classification:
Rank Name:Superorder
Rank Value:Rosanae
Identifer:https://www.itis.gov
ID: 846548
Classification:
Rank Name:Order
Rank Value:Fagales
Identifer:https://www.itis.gov
ID: 19273
Classification:
Rank Name:Family
Rank Value:Fagaceae
Identifer:https://www.itis.gov
ID: 19275
Classification:
Rank Name:Genus
Rank Value:Quercus
Common Name:oak
Identifer:https://www.itis.gov
ID: 19276
Classification:
Rank Name:Species
Rank Value:Quercus rubra
Common Name:northern red oak
Identifer:https://www.itis.gov
ID: 19408

Project

Parent Project Information:

Title:Evaluating Patterns and Drivers of Leaf Water Use Efficiency with Ontogeny in Eastern Deciduous Forests of New York State
Personnel:
Individual: Kenneth Davidson
Organization:Brookhaven National Lab
Email Address:
kdavidson.sci@gmail.com
Id:https://orcid.org/0000-0001-5745-9689
Role:PI
Abstract:

The physiology of stomata is a critical area for forest conservation science, as stomata play a dual role in limiting water loss via stomatal conductance (gs) and allowing for CO2 entry into the leaf for use in photosynthesis (A). Variation in stomatal response to photosynthesis leads to a range of water use efficiency (WUE) among genotypes, species, and regions. Despite the fact that WUE directly impacts global carbon and water cycles, lack of knowledge regarding dynamics in WUE remains one of the largest uncertainties in current model predictions of the functioning of North American forests, with almost no studies addressing how WUE shits with leaf ontogeny. I plan to leverage the diversity of eastern deciduous forest trees at the Black Rock Forest Conservancy to aid in understanding if, how, and why leaf level WUE shifts with seasonal leaf ontogeny. Understanding of intraspecific dynamics in WUE, as well as the physiological, anatomical, and abiotic factors which drive these dynamics will allow for better predictions of how the forest will respond to climate change, which can be translated into conservation actions, such as protecting vulnerable species, targeted outplanting campaigns, and precision extirpation of unwanted invasive species.

Additional Award Information:
Funder:Black Rock Forest Consortium
Title:David Redden Conservation Science Fund
URL:https://www.blackrockforest.org/research/david-redden-small-grants-program
Other Metadata

Additional Metadata

additionalMetadata
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        |___element 'metadata'
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        |     |     |     |  \___attribute 'name' = 'millimolPerMeterSquaredPerSecond'
        |     |     |     |___text '\n          '
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        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'YYYYMMDD'
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        |     |     |     |___text '\n        '
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Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'emlEditor'
        |     |        \___attribute 'app' = 'ezEML'
        |     |        \___attribute 'release' = '2023.06.26'
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