Data Package Metadata View Summary

2018 Priming experiment to investigate dissolved organic matter turnover

General Information

Data Package:

Local Identifier:

edi.1487.1

Title:

2018 Priming experiment to investigate dissolved organic matter turnover

Alternate Identifier:

DOI PLACE HOLDER

Abstract:

This dataset is associated with an experiment that was conducted on the University of Florida's campus to evaluate the role of priming in dissolved organic matter turnover. Incubations were established with dissolved organic matter substrates derived from a 13C-labeled algal substrate, mangrove peat derived dissolved organic matter leachate, and a primed condition with both algal and peat substrates. A seawater control was also included. This dataset includes measurements of water chemistry, carbon dioxide, stable isotopes, and gene counts for clusters of orthologous genes (COG). For more information, please refer to Morrison et al., Mangrove peat and algae leachates elicit rapid and contrasting molecular and microbial responses in coastal waters

Publication Date:

2023-08-16

For more information:
Visit:	DOI PLACE HOLDER

Time Period

Begin:

2018

End:

2018

People and Organizations
Contact:	Morrison, Elise S (University of Florida, Assistant Professor) [ email ]
Creator:	Morrison, Elise S (University of Florida, Assistant Professor)

Data Entities
Data Table Name:	Priming_summary
Description:	Summary data for pH, dissolved inorganic carbon, dissolved organic carbon
Data Table Name:	COG taxonomy counts
Description:	Gene counts for clusters of orthologous genes (COG) and associated taxonomy for all samples sequenced.
Data Table Name:	CO2_data_processed
Description:	Carbon dioxide concentrations for 12C and 13C-CO2, as well as stable isotope value for 13C-CO2
Data Table Name:	POM_stable_isotopes_consolidated_final
Description:	Particulate material analyzed for elemental analysis and stable isotopes of carbon and nitrogen

Detailed Metadata

Data Entities

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/1487/1/40035d34f8c9a716d83fdbb0e51ce025
Name:	Priming_summary
Description:	Summary data for pH, dissolved inorganic carbon, dissolved organic carbon
Number of Records:	36
Number of Columns:	11

Table Structure

Object Name:

Priming_summary.csv

Size:

2251 byte

Authentication:

b99496521a2e17728f6e069248b74092 Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

\r\n

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

SampleID

Treatment

Rep

Timepoint

DIC ugC/g

d13DIC permil

DOC mg/L

DOC uM

InjectionTime

InjectionDate

Column Name:

SampleID

Treatment

Rep

Timepoint

DIC ugC/g

d13DIC permil

DOC mg/L

DOC uM

InjectionTime

InjectionDate

Definition:

Sample identifier

Sample treatment description

Sample replicate identifier

Timepoint of sample collection

pH of water sample

Dissolved inorganic carbon

Stable isotope value of carbon in dissolved inorganic carbon

Dissolved organic carbon

Dissolved organic carbon uM

Time of gas injection on instrument

Date of gas sample injection into instrument

Storage Type:

string

float

string

Measurement Type:

nominal

ratio

nominal

Measurement Values Domain:

Definition

text

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	Not applicable
Source

Code Definition

Code	SW
Definition	Control
Source

Code Definition

Code	SWA
Definition	Algae
Source

Code Definition

Code	SWP
Definition	Peat
Source

Code Definition

Code	SWPA
Definition	Primed
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	1
Definition	replicate 1
Source

Code Definition

Code	2
Definition	replicate 2
Source

Code Definition

Code	3
Definition	replicate 3
Source

Code Definition

Code	4
Definition	replicate 4
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	Not applicable
Source

Code Definition

Code	TP0
Definition	Initial timepoint
Source

Code Definition

Code	TP1
Definition	Final timepoint
Source

Unit	NA
Type	real

Unit	ugC/g
Type	real

Unit	permil
Type	real

Unit	milligramPerLiter
Type	real

Unit	micromolePerLiter
Type	real

Definition

text

Definition

text

Missing Value Code:

Code	NA
Expl	not determined

Code	NA
Expl	not applicable

Code	NA
Expl	Not applicable

Code	NA
Expl	Not determined

Code	NA
Expl	Not determined

Code	NA
Expl	Not determined

Code	NA
Expl	Not determined

Code	NA
Expl	Not determined

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/1487/1/ebab052575e8506e9464422312687c2e
Name:	COG taxonomy counts
Description:	Gene counts for clusters of orthologous genes (COG) and associated taxonomy for all samples sequenced.
Number of Records:	2755
Number of Columns:	5

Table Structure

Object Name:

Table_X_COG_taxonomy_summarized_082020.csv

Size:

160004 byte

Authentication:

44647c5e384d254f676d0abb4432ef63 Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

\r\n

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

COG.Pathway

Treatment

Phylum

GeneCopies

Column Name:

COG.Pathway

Treatment

Phylum

GeneCopies

Definition:

Name of clusters of orthologous gene (COG) pathway

Identifier for which treatment the data is associated with

Time point

Phylum associated with the COG pathway

Number of gene copies associated with the COG pathway

Storage Type:

string

Measurement Type:

nominal

Measurement Values Domain:

Definition

text

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	AlgaeLeachate
Definition	Leachate of filtered algal dissolved organic matter
Source

Code Definition

Code	SW
Definition	Sea water control
Source

Code Definition

Code	SWA
Definition	Treatment amended with algal leachate
Source

Code Definition

Code	SWP
Definition	Treatment amended with peat leachate
Source

Code Definition

Code	SWPA
Definition	Treatment amended with both algal and peat leachates
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	No time point associated with this sample; this was a leachate used to establish the experiment
Source

Code Definition

Code	TP0
Definition	Initial timepoint
Source

Code Definition

Code	TP1
Definition	Final timepoint
Source

Definition

text

Definition

text

Missing Value Code:

Code	NA
Expl	No time point associated with this sample
Code	nan
Expl	No time point associated with this sample

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/1487/1/afaa4ec30b4838108095b6baf7f22c03
Name:	CO2_data_processed
Description:	Carbon dioxide concentrations for 12C and 13C-CO2, as well as stable isotope value for 13C-CO2
Number of Records:	32
Number of Columns:	9

Table Structure

Object Name:

CO2_data_processed.csv

Size:

3371 byte

Authentication:

af4ece8ddcd1ca2b0f36237b52fbbc33 Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

\r\n

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

sampleID

meanx12CO2

sdx12CO2

meanx13CO2

sdx13CO2

meantotalCO2

sdxtotalCO2

meaniCO2

sdico2

Column Name:

sampleID

meanx12CO2

sdx12CO2

meanx13CO2

sdx13CO2

meantotalCO2

sdxtotalCO2

meaniCO2

sdico2

Definition:

Sample identifier

Concentration of 12C-carbon dioxide

Standard deviation of 12CO2

Concentration of 13C-carbon dioxide

Standard deviation of 13-C carbon dioxide

Concentration of total carbon dioxide (12C and 13C)

Standard deviation of total CO2

Stable isotope value of 13C-carbon dioxide

Standard deviation of stable isotope value of 13C-carbon dioxide

Storage Type:

string

float

Measurement Type:

nominal

ratio

Measurement Values Domain:

Definition

text

Unit	ppm
Type	real

Unit	ppm
Type	real

Unit	ppm
Type	real

Unit	ppm
Type	real

Unit	ppm
Type	real

Unit	ppm
Type	real

Unit	permil
Type	real

Unit	permil
Type	real

Missing Value Code:

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/1487/1/265cd4faa0698125e142630870a39653
Name:	POM_stable_isotopes_consolidated_final
Description:	Particulate material analyzed for elemental analysis and stable isotopes of carbon and nitrogen
Number of Records:	29
Number of Columns:	8

Table Structure

Object Name:

POM_stable_isotopes_consolidated_final.csv

Size:

1781 byte

Authentication:

1325ca2923f1636438d84fcccd416786 Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

\r\n

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

SampleID

d15N

percentN_notacidified

percentTC

d13C

percentPOC

notes

Column Name:

SampleID

d15N

percentN_notacidified

percentTC

d13C

percentPOC

notes

Definition:

Sample identifier

Description of whether the sample is a target or source

Nitrogen stable isotope value

Percent nitrogen

Percent total carbon

Stable isotope value of carbon

Percent particulate organic carbon

Additional notes

Storage Type:

string

float

string

Measurement Type:

nominal

ratio

nominal

Measurement Values Domain:

Definition

text

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	Not applicable
Source

Code Definition

Code	source
Definition	Source of dissolved organic matter
Source

Code Definition

Code	target
Definition	mixture of organic matter substrates
Source

Unit	permil
Type	real

Unit	percent
Type	real

Unit	percent
Type	real

Unit	permil
Type	real

Unit	percent
Type	real

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	Not applicable
Source

Code Definition

Code	average from 134-106cm depths for core
Definition	Description of sampling depth
Source

Code Definition

Code	from isotope tray 9/12/18
Definition	Details about when tray was run
Source

Code Definition

Code	likely contaminated with enriched filter
Definition	C stable isotope value was positive
Source

Code Definition

Code	ok
Definition	passed quality check
Source

Missing Value Code:

Code	NA
Expl	Not applicable

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
(No thesaurus)	Blue carbon, Organic matter, Stable isotopes, Biogeochemistry, Microbial communities

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package

Description:

Samples were collected from an incubation run on the University of Florida's campus in 2018. Details of the experimental design, sample analysis, and instrumentation can be found in Morrison et al., Mangrove peat and algae leachates elicit rapid and contrasting molecular and microbial responses in coastal waters.

People and Organizations

Publishers:

Organization:

Environmental Data Initiative

Email Address:

info@edirepository.org

Web Address:

https://edirepository.org

Id:

https://ror.org/0330j0z60

Creators:

Individual:

Elise S Morrison

Organization:

University of Florida

Position:

Assistant Professor

Email Address:

elisemorrison@essie.ufl.edu

Id:

https://orcid.org/0000000325694259

Contacts:

Individual:

Elise S Morrison

Organization:

University of Florida

Position:

Assistant Professor

Email Address:

elisemorrison@essie.ufl.edu

Id:

https://orcid.org/0000000325694259

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period

Begin:

2018

End:

2018

Sampling Site:

Description:

Williamson Hall, University of Florida. The location where the experiment was conducted.

Site Coordinates:

Longitude (degree):

-82.346494

Latitude (degree):

29.647566

Sampling Site:

Description:

Location where the estuarine inoculant was collected.

Site Coordinates:

Longitude (degree):

-82.761944

Latitude (degree):

29.001398

Project

Parent Project Information:

Title:

Mangrove peat and algae leachates elicit rapid and contrasting molecular and microbial responses in coastal waters

Personnel:

Individual:

Elise S Morrison

Email Address:

emorrison@ufl.edu

Id:

https://orcid.org/0000000325694259

Role:

First Author

Additional Award Information:

Funder:	Department of Energy
Title:	FICUS 49505

Additional Award Information:

Funder:	Jon and Beverley Thompson
Title:	endowed chair to T.S. Bianchi

Maintenance

Maintenance:

Description:	This dataset is completed and no maintenance is foreseen.
Frequency:	notPlanned

Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'ppm'
        |     |     |     |  \___attribute 'name' = 'ppm'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'NA'
        |     |     |     |  \___attribute 'name' = 'NA'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'ugC/g'
        |     |     |     |  \___attribute 'name' = 'ugC/g'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'emlEditor'
        |     |        \___attribute 'app' = 'ezEML'
        |     |        \___attribute 'release' = '2023.08.08'
        |     |___text '\n    '
        |___text '\n  '

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EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

Data Package Metadata View Summary

2018 Priming experiment to investigate dissolved organic matter turnover

Data Entities

Data Table

Data Table

Data Table

Data Table

Data Package Usage Rights

Keywords

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

People and Organizations

Temporal, Geographic and Taxonomic Coverage

Project

Parent Project Information:

Maintenance

Additional Metadata

Additional Metadata

Recently Added

Recently Updated

Data Package Metadata View Summary

2018 Priming experiment to investigate dissolved organic matter turnover

+/- Data Entities

Data Table

Data Table

Data Table

Data Table

+/- Data Package Usage Rights

+/- Keywords

+/- Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

+/- People and Organizations

+/- Temporal, Geographic and Taxonomic Coverage

+/- Project

Parent Project Information:

+/- Maintenance

+/- Additional Metadata

+/- Additional Metadata

Data Entities

Data Package Usage Rights

Keywords

Methods and Protocols

People and Organizations

Temporal, Geographic and Taxonomic Coverage

Project

Maintenance

Additional Metadata

Additional Metadata