Data Package Metadata   View Summary

Aboveground Biomass of Florida Scrub Plants

General Information
Data Package:
Local Identifier:edi.160.1
Title:Aboveground Biomass of Florida Scrub Plants
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Biomass regressions are useful in non-destructively deriving biomass estimates for many applications. We present aboveground biomass regressions for 14 species of resprouting plants found in pyrogenic Florida scrub and related ecosystems. Aboveground biomass was collected from sites within five time-since-fire classes and predicted by plant height, canopy length, canopy width, species, and time-since-fire class. We were generally able to predict 72-95% of biomass variation from the three plant measurements. Regressions without plant width were almost as successful. For six of the species, time-since-fire affected the allometric equations, so we present regressions for specific time-since-fire classes for these species. Species differed markedly in their biomass equations. Within species groups, individual species usually differed but were similar for Lyonias. These equations will be useful in summarizing species responses to fire frequency and fire intensity in Florida scrub and related ecosystems.

Publication Date:2021-02-19

Time Period
Begin:
2009-06-01
End:
2017-12-31

People and Organizations
Contact:Data Manager (Archbold Biological Station) [  email ]
Creator:Menges, Eric S (Archbold Biological Station)
Creator:Smith, Stacy A (Archbold Biological Station)

Data Entities
Data Table Name:
biomass_data.csv
Description:
Aboveground Biomass data
Data Table Name:
biomass_species_info.csv
Description:
Species Information
Data Table Name:
biomass_regression_equations1.csv
Description:
Regression Equations 1
Data Table Name:
biomass_regression_equations2.csv
Description:
Regression Equations 2
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/160/1/31b228319bd38a15755a789cf047850c
Name:biomass_data.csv
Description:Aboveground Biomass data
Number of Records:609
Number of Columns:11

Table Structure
Object Name:biomass_data.csv
Size:23685 bytes
Authentication:e7af5226239b029e928100184356ab7b Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:bu  
species  
tsf  
lastburn  
plantid  
numstm  
numclp  
height  
length  
width  
totwt  
Definition:burn unitspecies codeyears since last fire categoryyear of last fireplant id number within burn unitnumber of stemsnumber of clumpsPlant height (tallest stem in natural posture)plant length (longest axis)plant width (perpendicular to length)total aboveground weight
Storage Type:string  
string  
string  
date  
float  
float  
float  
float  
float  
float  
float  
Measurement Type:nominalnominalnominaldateTimeratioratioratioratioratioratioratio
Measurement Values Domain:
Definitionburn unit
Definitionspecies code
Definitionyears since last fire category
FormatYYYY
Precision
Unitdimensionless
Typenatural
Min
Max136 
Unitdimensionless
Typenatural
Min
Max44 
Unitdimensionless
Typenatural
Min
Max18 
Unitcentimeter
Typereal
Min
Max451 
Unitcentimeter
Typereal
Min0.9 
Max283 
Unitcentimeter
Typereal
Min0.5 
Max200 
Unitgram
Typereal
Min0.07 
Max2089.23 
Missing Value Code:          
Code9999
Explstems not counted for graminoids
Code9999
Explonly for graminoids
       
Accuracy Report:                      
Accuracy Assessment:                      
Coverage:                      
Methods:                      

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/160/1/5febac0aa7c99f82842f6ae3b3f8e863
Name:biomass_species_info.csv
Description:Species Information
Number of Records:14
Number of Columns:3

Table Structure
Object Name:biomass_species_info.csv
Size:771 bytes
Authentication:8d04c594651388fa0eb6a17c03e9d7f2 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:Species  
Common_Name  
Family  
Definition:Species name and authority determined by Wunderlin RP, Hansen BF, Franck AR, Essig FB. 2019. Atlas of Florida Plants (http://florida.plantatlas.usf.edu/). Institute for Systematic Botany, University of South Florida, Tampa, USA.Assigned common name determined by Wunderlin et al. 2019.Associated plant family
Storage Type:string  
string  
string  
Measurement Type:nominalnominalnominal
Measurement Values Domain:
DefinitionSpecies name and authority determined by Wunderlin RP, Hansen BF, Franck AR, Essig FB. 2019. Atlas of Florida Plants (http://florida.plantatlas.usf.edu/). Institute for Systematic Botany, University of South Florida, Tampa, USA.
DefinitionAssigned common name determined by Wunderlin et al. 2019.
DefinitionAssociated plant family
Missing Value Code:      
Accuracy Report:      
Accuracy Assessment:      
Coverage:      
Methods:      

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/160/1/1e627ffa01771d41219de28119381a63
Name:biomass_regression_equations1.csv
Description:Regression Equations 1
Number of Records:43
Number of Columns:12

Table Structure
Object Name:biomass_regression_equations1.csv
Size:3725 bytes
Authentication:a2f311da941d38b5e8347318a6130cce Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:Species  
TSF  
Height  
SE_height  
Canopy_Length  
SE_canopy_length  
Canopy_Width  
SE_canopy_width  
Intercept  
SE_intercept  
r-sq  
N  
Definition:Species nametime since fire in yearsregression coefficient of heightstandard error of heightregression coefficient of canopy lengthstandard error of canopy lengthregression coefficient of canopy widthstandard error of canopy widthrepression coefficient of the model interceptstandard error of the model interceptR-squared value of modelsample size of model
Storage Type:string  
string  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
Measurement Type:nominalnominalratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
DefinitionSpecies name
Definitiontime since fire in years
Unitdimensionless
Typereal
Min-0.219 
Max4.563 
Unitdimensionless
Typereal
Min0.111 
Max1.837 
Unitdimensionless
Typereal
Min-0.309 
Max3.647 
Unitdimensionless
Typereal
Min0.144 
Max4.868 
Unitdimensionless
Typereal
Min-2.987 
Max1.865 
Unitdimensionless
Typereal
Min0.153 
Max3.876 
Unitdimensionless
Typereal
Min-14.513 
Max-3.609 
Unitdimensionless
Typereal
Min0.349 
Max9.269 
Unitdimensionless
Typereal
Min0.368 
Max0.99 
Unitdimensionless
Typenatural
Min
Max56 
Missing Value Code:                        
Accuracy Report:                        
Accuracy Assessment:                        
Coverage:                        
Methods:                        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/160/1/4eafae6ebcab1293dc9b4f26043b5970
Name:biomass_regression_equations2.csv
Description:Regression Equations 2
Number of Records:43
Number of Columns:10

Table Structure
Object Name:biomass_regression_equations2.csv
Size:3189 bytes
Authentication:15da3c48f632559056357012b06e940f Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:Species  
TSF  
Height  
SE_height  
Canopy_Length  
SE_canopy_length  
Intercept  
SE_intercept  
r-sq  
N  
Definition:Species nametime since fire in yearsregression coefficient of heightstandard error of heightregression coefficient of canopy lengthstandard error of canopy lengthrepression coefficient of the model interceptstandard error of the model interceptR-squared value of modelsample size of model
Storage Type:string  
string  
float  
float  
float  
float  
float  
float  
float  
float  
Measurement Type:nominalnominalratioratioratioratioratioratioratioratio
Measurement Values Domain:
DefinitionSpecies name
Definitiontime since fire in years
Unitdimensionless
Typereal
Min-1.415 
Max3.828 
Unitdimensionless
Typereal
Min0.115 
Max2.16 
Unitdimensionless
Typereal
Min0.337 
Max2.861 
Unitdimensionless
Typereal
Min0.112 
Max2.424 
Unitdimensionless
Typereal
Min-16.006 
Max-2.351 
Unitdimensionless
Typereal
Min0.397 
Max5.682 
Unitdimensionless
Typereal
Min0.353 
Max0.971 
Unitdimensionless
Typenatural
Min
Max56 
Missing Value Code:                    
Accuracy Report:                    
Accuracy Assessment:                    
Coverage:                    
Methods:                    

Data Package Usage Rights

This data package is released to the "public domain" under Creative Commons CC0 1.0 "No Rights Reserved" (see: https://creativecommons.org/publicdomain/zero/1.0/). It is considered professional etiquette to provide attribution of the original work if this data package is shared in whole or by individual components. A generic citation is provided for this data package on the website https://portal.edirepository.org (herein "website") in the summary metadata page. Communication (and collaboration) with the creators of this data package is recommended to prevent duplicate research or publication. This data package (and its components) is made available "as is" and with no warranty of accuracy or fitness for use. The creators of this data package and the website shall not be liable for any damages resulting from misinterpretation or misuse of the data package or its components. Periodic updates of this data package may be available from the website. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularyplant ecology, plants, fire, biomass
(No thesaurus)Archbold Biological Station, central Florida, Lake Wales Ridge, Florida scrub, resprouting, oaks, palmettos, scrubby flatwoods, flatwoods, sand pine scrub, ericaceae, post-fire response

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

We chose plant species based on abundance and their importance in field experiments in which we wanted to predict biomass from non-destructive measurements. We chose 14 species including graminoids (Aristida stricta, Rhynchospora megalocarpa), ericaceous subshrubs (Gaylussacia dumosa, blueberries: Vaccinium darrowii, V. myrsinites), palmettos (Sabal etonia, Serenoa repens), and larger shrubs including two ericads (Lyonia fruticosa, L. lucida), four scrub oaks (Quercus chapmanii, Q. geminata, Q. inopina, Q. myrtifolia), and the spindly shrub Palafoxia feayi. Nomenclature follows Wunderlin et al. (2019).

These species are dominant plants in a range of habitats at our study site, Archbold Biological Station. Archbold Biological Station (Swain 1998), located in south-central Florida, is one of the larger tracts of undisturbed Lake Wales Ridge landscape, a region renowned for its endemism (Estill and Cruzan 2001, Turner et al. 2006). Habitat types (modified from Abrahamson et al. 1984) include rosemary scrub, scrubby flatwoods, oak-dominated sand pine scrub, flatwoods, southern ridge sandhill turkey oak phase, and southern ridge sandhill, which in its hickory phase is also known as oak hickory scrub (Menges 2007). We sampled plants from four habitats: scrubby flatwoods, rosemary scrub, sandhill, and flatwoods.

Fire is the dominant ecological disturbance in Florida scrub (including rosemary scrub, scrubby flatwoods, and sand pine scrub), sandhill, and flatwoods (Menges 2007, Menges and Gordon 2010) and prescribed fire is a key management tool used to maintain fuel loads, manage for biodiversity, and promote key species (Menges et al. 2017). We collected data from sites spanning a range of times-since-fire, which we separated into in five categories (~6 months, 1-2 years, 3-6 years, 7-14 years, and 15-30 years). Because some plants were habitat restricted, we did not sample all species in every habitat type.

Specific locations for biomass sampling were chosen randomly within the time-since-fire categories and habitat types. We generated 200 random starting points and characterized points for their time-since-fire based on GIS shapefiles of fire history (Menges et al. 2017). Within each time-since-fire class, our goal was to collect aboveground biomass from 8 plants per species. In some cases, we collected additional samples to improve the regressions.

In the field, we navigated to each random starting point, making sure it was > 20 m from a burn-unit edge (to avoid potential edge effects). From this starting point, we chose a random compass direction and created a 40 m transect. Along this transect, we used random numbers to choose stratified random sampling points (eight points, one for every 5 m of the transect) for each target species present. We then selected the nearest plant (within 7 m) of each species to the sampling point.

Plants were defined as groups of stems in a clump, with no stem more than 15 cm from other stems. This definition was chosen to be consistent with research projects requiring the biomass regressions. In the field, we counted the number of stems (branching below ground level) and measured height (in cm, perpendicular to the ground, as the plant was in its natural posture), length (largest crown diameter, in cm), and width (perpendicular crown diameter, in cm). For graminoids, we counted the number of clumps within a distinct patch instead of the number of stems. For Serenoa repens and Sabal etonia, crown dimensions referred to the major clumps at the end of rhizomes, not the small axillary sprouts.

Once the plant was chosen and measured, we clipped all aboveground parts of plants and placed them into labeled paper bags. Plant material was returned to the lab, cut into small pieces (10-15 cm), placed in a drying oven, dried at 70 degrees C for at least 48 hours, and weighed to the nearest 0.01 g on an Ohaus Scout-Pro scale. We confirmed that 48 hours was sufficient drying time by drying some samples for longer and reweighing them.

Analysis. We ran preliminary analyses including the raw number of stems per plant and several transformations of this variable. The number of stems per plant was never a significant predictor of aboveground biomass. In addition, we binned number of stems into three categories (individually for each species) and examined its predictive power in general linear models (GLMs), Again, stems had no significant predictive effects. Therefore, we built regression models without including number of stems.

We used GLMs to test effects of time-since-fire in regressions of aboveground biomass on height, canopy length, and canopy width. Based on preliminary analyses using linear measures and various transformations, we used natural log (ln) transformations for all four variables. We used natural log transformed data and provide the SE in the tables; this information provides a correction factor to avoid bias if back-transformation to non-log data is needed (Sprugel 1983).

If time-since-fire was a significant predictor, we also ran regressions for individual time-since-fire classes for that species; otherwise, we combined all plants of a species into a single regression. We also created regressions using only height and canopy length as predictors, for our projects where canopy widths were not measured.

We also tested GLMs for all species and for species grouped by relatedness (often genus; oaks, palmettos, lyonias, and blueberries) to see if species identity or its interaction with time-since-fire was a significant predictor of biomass. These analyses will determine if aboveground biomass regressions combining closely related species are appropriate.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Creators:
Individual: Eric S Menges
Organization:Archbold Biological Station
Email Address:
emenges@archbold-station.org
Individual: Stacy A Smith
Organization:Archbold Biological Station
Email Address:
sa.smith@ufl.edu
Contacts:
Organization:Archbold Biological Station
Position:Data Manager
Email Address:
datamanager@archbold-station.org

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2009-06-01
End:
2017-12-31
Geographic Region:
Description:"Archbold Biological Station, Highlands County, Florida, USA"
Bounding Coordinates:
Northern:  27.21143Southern:  27.120002
Western:  -81.370065Eastern:  -81.332396

Project

Parent Project Information:

Title:Biomass equations for Florida plants
Personnel:
Individual: Eric S Menges
Organization:Archbold Biological Station
Email Address:
emenges@archbold-station.org
Role:Principal Investigator
Funding: National Science Foundation DEB1347843
Related Project:
Title:Biomass equations for Florida plants
Personnel:
Individual: Stacy A Smith
Organization:Archbold Biological Station
Email Address:
sa.smith@ufl.edu
Role:Principal Investigator
Funding: National Science Foundation DEB1347843

Maintenance

Maintenance:
Description:complete
Frequency:

Additional Info

Additional Information:
 

Menges, E.S. and S.A. Smith. 2019. Predicting aboveground biomass for Florida scrub plants. Florida Scientist 82:63-72.

Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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