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Microbial trait multifunctionality drives soil organic matter formation potential

General Information
Data Package:
Local Identifier:edi.1644.1
Title:Microbial trait multifunctionality drives soil organic matter formation potential
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Soil microbes are a major source of organic residues that accumulate as soil organic matter (SOM), the largest terrestrial reservoir of carbon on Earth. As such, there is growing interest in determining the microbial traits that drive SOM formation and stabilization; however, whether certain microbial traits consistently predict SOM accumulation across different functional pools (e.g., total vs. stable SOM) is unresolved. To address these uncertainties, we incubated individual species of fungi in SOM-free model soils, allowing us to directly relate the physiological, morphological, and biochemical traits of fungi to their SOM formation potentials. We find that the formation of different SOM functional pools is associated with distinct fungal traits, and that ‘multifunctional’ species with intermediate investment across this key grouping of traits (namely, carbon use efficiency, growth rate, turnover rate, and biomass protein and phenol contents) promote SOM formation, functional complexity, and stability. Our results highlight the limitations of categorical trait-based frameworks that describe binary (high/low) trade-offs between microbial traits, instead emphasizing the importance of synergies among microbial traits for the formation of functionally complex SOM.

Publication Date:2024-05-24
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2020
End:
2023

People and Organizations
Contact:Whalen, Emily  [  email ]
Creator:Whalen, Emily (Past: University of New Hampshire; Current: Critical Ecology Lab)
Creator:Frey, Serita (University of New Hampshire)
Creator:Grandy, Stuart (University of New Hampshire)
Creator:Geyer, Kevin (Young Harris College)
Creator:Morrison, Eric (University of New Hampshire)

Data Entities
Data Table Name:
Whalen_SOM_pools
Description:
Carbon concentrations (%) of whole/bulk soils, MAOM and POM fractions; proportion of aggregates that were water-stable; proportion of C that was chemically stable or biologically stable (%)
Data Table Name:
Whalen_fungal_traits
Description:
Trait values for individual fungal isolates; trait label abbreviations are as follows: GR_liquid (Optimum growth rate, measured in liquid culture, log-phase growth), CUE_liquid (Optimum CUE, measured in liquid culture, log-phase growth), GR_soil_mass_specific (Fungal growth rates measured in soils, log-phase growth), CUE_soil (Fungal CUE measured in soils, log-phase growth), CUE_soil_18O (Fungal CUE measured at stationary growth using 18-O water incorporation into DNA method), melanin_mg_mg_biomass (Melanin in fungal biomass, mg melanin/mg biomass), Turnover_days (Biomass turnover length, days), BG (Potential activity of betaglucosidase, μmol substrate h-1 g-1 dry soil), CBH (Potential activity of cellobiohydrolase, μmol substrate h-1 g-1 dry soil), NAG (Potential activity of N-acetylglucosaminadase, μmol substrate h-1 g-1 dry soil), PHOS (Potential activity of acid phosphatase, μmol substrate h-1 g-1 dry soil), LAP (Potential activity of leucine aminopeptidase, μmol substrate h-1 g-1 dry soil), ABTS (Potential activity of phenol peroxidase, μmol substrate h-1 g-1 dry soil), TMB (Potential activity of peroxidase, μmol substrate h-1 g-1 dry soil), biomass_aromatic (Relative abundance of aromatic compounds in fungal biomass, %), biomass_lignin (Relative abundance of "lignin" in fungal biomass, %) [NOTE: described as "lignin" by AMDIS database; likely represents fungal melanin], biomass_lipid (Relative abundance of lipids in fungal biomass, %), biomass_polysacc (Relative abundance of polysaccharides in fungal biomass, %), biomass_Nbearing (Relative abundance of N-bearing compounds in fungal biomass, %), biomass_protein (Relative abundance of proteins in fungal biomass, %), biomass_phenol (Relative abundance of phenolic compounds in fungal biomass, %), hyphal_length_m_per_g_drysoil (Hyphal lengths, m/g dry soil), hyphal_surface_area_m2 (Hyphal surface area, m2)
Data Table Name:
Whalen_trait_multifunctionality
Description:
Final calculations of effective trait multifunctionality based on the modified averaging approach using Hill numbers (proposed by Byrnes et al. 2023). Columns C-X include the standardized values for each trait that were used in the averaging calculation. Data are outputs from the ‘multifunc’ package in R. Trait label information is available in/associated with "Whalen_trait_data.csv" file.
Data Table Name:
Whalen_SOM_formation_potential
Description:
Final calculations of SOM formation potential (effective multifunctionality calculated based on fungal contributions to multiple SOM pools), based on the modified averaging approach using Hill numbers (proposed by Byrnes et al. 2023). Columns E-J include the standardized values for each SOM pool that were used in the averaging calculation. Data are outputs from the ‘multifunc’ package in R. Input values can be found in the "Whalen_SOM_pools.csv" file.
Data Table Name:
Whalen_PyGCMS_whole soil_classes
Description:
Relative abundances of chemical compound classes (e.g., aromatics, lipids, etc.) within whole soils characterized by ramped pyrolysis gas chromatography-mass spectrometry (ramped Py-GCMS); temperatures correspond to the stepped temperature of combustion, increasing from 330C to 735C. Compounds that combust at higher temperatures have higher thermal stabilities than those that combust at lower temperatures.
Data Table Name:
Whalen_PyGCMS_MAOM_classes
Description:
Relative abundances of chemical compound classes (e.g., aromatics, lipids, etc.) within mineral-associated organic matter (MAOM) fraction, characterized by pyrolysis gas chromatography-mass spectrometry (Py-GCMS). Samples were pyrolyzed at a single temperature (600C).
Data Table Name:
Whalen_PyGCMS_MAOM_compounds
Description:
Relative abundances of individual compounds measured within the MAOM fraction for each fungal isolate (pyrolyzed at single temperature, 600C). Characterized by pyrolysis gas chromatography-mass spectrometry (Py-GCMS).
Data Table Name:
Whalen_PyGCMS_whole soil_compounds
Description:
Relative abundances of individual compounds within whole soils, characterized by ramped pyrolysis gas chromatography-mass spectrometry (ramped Py-GCMS). "Temp" column corresponds with the temperature at which samples were pyrolyzed, ranging from 330C to 735C. Compounds that combust at higher temperatures have greater thermal stabilities than those that combust at lower temperatures.
Data Table Name:
Whalen_sequential_extraction_data
Description:
Total organic carbon concentrations and total dissolved nitrogen concentrations in water, KCl and sodium pyrophosphate extracts. Soils with SOM formed by different fungal isolates were subjected to a sequential extraction with water first, then KCl and finally sodium pyrophosphate.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1644/1/d18cc447eca3eadc28303e5ef24611a9
Name:Whalen_SOM_pools
Description:Carbon concentrations (%) of whole/bulk soils, MAOM and POM fractions; proportion of aggregates that were water-stable; proportion of C that was chemically stable or biologically stable (%)
Number of Records:38
Number of Columns:11

Table Structure
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Table Column Descriptions
 Sample_IDSpecies_IDSpecies_namePhylaTotal_C (%)MAOM_C (%)POM_C (%)ChemStable_C (%)BioStable_C (%)WaterStable_Agg (%)single_agg_stability_%
Column Name:Sample_ID  
Species_ID  
Species_name  
Phyla  
Total_C (%)  
MAOM_C (%)  
POM_C (%)  
ChemStable_C (%)  
BioStable_C (%)  
WaterStable_Agg (%)  
single_agg_stability_%  
Definition:Unique sample identifierabbreviation representing individual fungal isolates/speciesFull fungal species namesName of fungal phylumTotal carbon concentrations (%) in whole/bulk soilCarbon concentration of mineral-associated organic matter (MAOM) fractionCarbon concentration of particulate organic matter (POM) poolPercent of soil carbon that was chemically stable (i.e., resisted extraction by water, KCl and sodium pyrophosphate)Proportion of soil carbon that was biologically stable (i.e., resisted decomposition/respiration by active microbial inoculum during 3-month incubation)Proportion of soil mass that was aggregated and water-stable (>250 microns)Additional metric of aggregate stability conducted on single aggregate; proportion of initial aggregate mass that was water-stable
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Definitiontext
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeControl
DefinitionControl samples included only model soils and substrate (no fungal inoculum)
Source
Code Definition
CodeCylindrium elongatum
DefinitionIsolate of Cylindrium elongatum
Source
Code Definition
CodeGymnopus sp.
DefinitionIsolate of Gymnopus sp. (no species-level identification available)
Source
Code Definition
CodeHypocrea minutispora
DefinitionIsolate of H. minutispora
Source
Code Definition
CodeMucor abundans
DefinitionIsolate of M. abundans
Source
Code Definition
CodeMucor mucedo
DefinitionIsolate of M. mucedo
Source
Code Definition
CodePanellus stipticus
DefinitionIsolate of P. stipticus
Source
Code Definition
CodePhacidium lacerum
DefinitionIsolate of P. lacerum
Source
Code Definition
CodeTrichoderma koningii
DefinitionIsolate of T. koningii
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAscomycota
DefinitionFungal phylum
Source
Code Definition
CodeBasidiomycota
DefinitionFungal phylum
Source
Code Definition
CodeControl
DefinitionControl samples (no fungal inoculum; only model soil + substrate)
Source
Code Definition
CodeMucoromycotina
DefinitionFungal sub-phylum
Source
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Missing Value Code:                      
Accuracy Report:                      
Accuracy Assessment:                      
Coverage:                      
Methods:                      

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1644/1/d43580e80427f5274d49593107a07450
Name:Whalen_fungal_traits
Description:Trait values for individual fungal isolates; trait label abbreviations are as follows: GR_liquid (Optimum growth rate, measured in liquid culture, log-phase growth), CUE_liquid (Optimum CUE, measured in liquid culture, log-phase growth), GR_soil_mass_specific (Fungal growth rates measured in soils, log-phase growth), CUE_soil (Fungal CUE measured in soils, log-phase growth), CUE_soil_18O (Fungal CUE measured at stationary growth using 18-O water incorporation into DNA method), melanin_mg_mg_biomass (Melanin in fungal biomass, mg melanin/mg biomass), Turnover_days (Biomass turnover length, days), BG (Potential activity of betaglucosidase, μmol substrate h-1 g-1 dry soil), CBH (Potential activity of cellobiohydrolase, μmol substrate h-1 g-1 dry soil), NAG (Potential activity of N-acetylglucosaminadase, μmol substrate h-1 g-1 dry soil), PHOS (Potential activity of acid phosphatase, μmol substrate h-1 g-1 dry soil), LAP (Potential activity of leucine aminopeptidase, μmol substrate h-1 g-1 dry soil), ABTS (Potential activity of phenol peroxidase, μmol substrate h-1 g-1 dry soil), TMB (Potential activity of peroxidase, μmol substrate h-1 g-1 dry soil), biomass_aromatic (Relative abundance of aromatic compounds in fungal biomass, %), biomass_lignin (Relative abundance of "lignin" in fungal biomass, %) [NOTE: described as "lignin" by AMDIS database; likely represents fungal melanin], biomass_lipid (Relative abundance of lipids in fungal biomass, %), biomass_polysacc (Relative abundance of polysaccharides in fungal biomass, %), biomass_Nbearing (Relative abundance of N-bearing compounds in fungal biomass, %), biomass_protein (Relative abundance of proteins in fungal biomass, %), biomass_phenol (Relative abundance of phenolic compounds in fungal biomass, %), hyphal_length_m_per_g_drysoil (Hyphal lengths, m/g dry soil), hyphal_surface_area_m2 (Hyphal surface area, m2)
Number of Records:27
Number of Columns:26

Table Structure
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Table Column Descriptions
 SampleIDSpecies_IDPhylaGR_liquidCUE_liquidGR_soil_mass_specificCUE_soilCUE_soil_18Omelanin_mg_mg_biomassTurnover_daysBGCBHNAGPHOSLAPABTSTMBbiomass_aromaticbiomass_ligninbiomass_lipidbiomass_polysaccbiomass_Nbearingbiomass_proteinbiomass_phenolhyphal_length_m_per_g_drysoilhyphal_surface_area_m2
Column Name:SampleID  
Species_ID  
Phyla  
GR_liquid  
CUE_liquid  
GR_soil_mass_specific  
CUE_soil  
CUE_soil_18O  
melanin_mg_mg_biomass  
Turnover_days  
BG  
CBH  
NAG  
PHOS  
LAP  
ABTS  
TMB  
biomass_aromatic  
biomass_lignin  
biomass_lipid  
biomass_polysacc  
biomass_Nbearing  
biomass_protein  
biomass_phenol  
hyphal_length_m_per_g_drysoil  
hyphal_surface_area_m2  
Definition:Unique sample identifierFungal isolate/species name abbreviationFungal phylum nameOptimum growth rate measured in liquid culture during log-phase growthOptimum carbon use efficiency, measured during log-phase growthGrowth rate measured in soilsCarbon use efficiency measured in soils during log-phase growthCarbon use efficiency measured during stationary growth using 18O-water incorporation into DNA methodMelanin concentration in fungal biomassBiomass turnover lengthPotential activity of beta-glucosidase enzymePotential activity of cellobiohydrolase enzymePotential activity of N-acetyl-glucosaminadase enzymePotential activity of acid phosphatase enzymePotential activity of leucine aminopepsidase enzymePotential activity of phenol oxidasePotential activity of peroxidaseRelative abundance of aromatic compounds in fungal biomassRelative abundance of "lignin" in fungal biomass (likely melanin; misidentified by AMDIS software)Relative abundance of lipids in fungal biomassRelative abundance of polysaccharides in fungal biomassRelative abundance of N-bearing compounds in fungal biomassRelative abundance of proteins in fungal biomassRelative abundance of phenolic compounds in fungal biomassFungal hyphal lengthsFungal hyphal surface areas
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Definitiontext
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAscomycota
DefinitionFungal phylum
Source
Code Definition
CodeBasidiomycota
DefinitionFungal phylum
Source
Code Definition
CodeMucoromycotina
DefinitionFungal phylum
Source
Unitmicrograms biomass-C produced/biomass-C/hour
Typereal
UnitUnits of carbon (ratio)
Typereal
Unitmicrograms biomass-C produced/biomass-C/hour
Typereal
UnitUnits of carbon
Typereal
UnitUnits of carbon
Typereal
Unitmg melanin/mg biomass
Typereal
UnitDays
Typereal
Unitmicromoles substrate/hour/gram dry soil
Typereal
Unitmicromoles substrate/hour/gram dry soil
Typereal
Unitmicromoles substrate/hour/gram dry soil
Typereal
Unitmicromoles substrate/hour/gram dry soil
Typereal
Unitmicromoles substrate/hour/gram dry soil
Typereal
Unitmicromoles substrate/hour/gram dry soil
Typereal
Unitmicromoles substrate/hour/gram dry soil
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitmeters hyphae/gram dry soil
Typereal
Unitm^2 hyphae/gram dry soil
Typereal
Missing Value Code:                                                    
Accuracy Report:                                                    
Accuracy Assessment:                                                    
Coverage:                                                    
Methods:                                                    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1644/1/98e72eb9ce8b60fdebf85f449eceb02d
Name:Whalen_trait_multifunctionality
Description:Final calculations of effective trait multifunctionality based on the modified averaging approach using Hill numbers (proposed by Byrnes et al. 2023). Columns C-X include the standardized values for each trait that were used in the averaging calculation. Data are outputs from the ‘multifunc’ package in R. Trait label information is available in/associated with "Whalen_trait_data.csv" file.
Number of Records:27
Number of Columns:26

Table Structure
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Table Column Descriptions
 SampleIDSpeciesGR_liquid.stdCUE_liquid.stdGR_soil_mass_specific.stdCUE_soil.stdCUE_soil_18O.stdmelanin_mg_mg_biomass.stdTurnover_days_norm2.stdBG.stdCBH.stdNAG.stdPHOS.stdLAP.stdABTS.stdTMB.stdbiomass_aromatic.stdbiomass_lipid.stdbiomass_polysacc.stdbiomass_Nbearing.stdbiomass_protein.stdbiomass_phenol.stdhyphal_length_m_per_g_drysoil.stdhyphal_surface_area_m2.stdmeanFunctioneffective_trait_multifunctionality
Column Name:SampleID  
Species  
GR_liquid.std  
CUE_liquid.std  
GR_soil_mass_specific.std  
CUE_soil.std  
CUE_soil_18O.std  
melanin_mg_mg_biomass.std  
Turnover_days_norm2.std  
BG.std  
CBH.std  
NAG.std  
PHOS.std  
LAP.std  
ABTS.std  
TMB.std  
biomass_aromatic.std  
biomass_lipid.std  
biomass_polysacc.std  
biomass_Nbearing.std  
biomass_protein.std  
biomass_phenol.std  
hyphal_length_m_per_g_drysoil.std  
hyphal_surface_area_m2.std  
meanFunction  
effective_trait_multifunctionality  
Definition:Unique sample identifierSpecies labelStandardized value for optimum growth rate, output from R 'multifunc' packageStandardized value for optimum CUE, output from R 'multifunc' packageStandardized values for growth rate measured in soils, output from 'multifunc' package in RStandardized values for carbon use efficiency measured in soils, output from 'multifunc' package in RStandardized values for carbon use efficiency, measured in soils at stationary growthStandardized values for biomass melanin, output from 'multifunc' package in RStandardized values for turnover, output from multifunc package in RStandardized values for beta-glucosidase activityStandardized values for cellobiohydrolase activityStandardized values for N-acetyl-glucosaminadase activityStandardized values for acid phosphatase activityStandardized values for leucine aminopeptidase activityStandardized values for phenol oxidase activityStandardized values for peroxidase activityStandardized values for relative abundance of aromatics in fungal biomassStandardized values for relative abundance of lipids in fungal biomassStandardized values for relative abundance of polysaccharides in fungal biomassStandardized values for relative abundance of N-bearing compounds in fungal biomassStandardized values for relative abundance of proteins in fungal biomassStandardized values for relative abundance of phenols in fungal biomassStandardized values for hyphal lengths in soilStandardized values for hyphal surface area in soilsAverage trait multifunctionality scores, calculated with 'multifunc' package in REffective trait multifunctionality scores; calculated using 'multifunc' package in R
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Definitiontext
Definitiontext
Unitmicrograms biomass-C produced/biomass-C/hour
Typereal
UnitUnits of carbon (ratio)
Typereal
Unitmicrograms biomass-C produced biomass-C-1 hr-1
Typereal
UnitUnits of carbon (ratio)
Typereal
UnitUnits of carbon (ratio)
Typereal
Unitmg melanin/mg biomass
Typereal
UnitDays
Typereal
Unitmicromoles substrate h-1 g-1 dry soil
Typereal
Unitmicromoles substrate h-1 g-1 dry soil
Typereal
Unitmicromoles substrate h-1 g-1 dry soil
Typereal
Unitmicromoles substrate h-1 g-1 dry soil
Typereal
Unitmicromoles substrate h-1 g-1 dry soil
Typereal
Unitmicromoles substrate h-1 g-1 dry soil
Typereal
Unitmicromoles substrate h-1 g-1 dry soil
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitmeters hyphae/g dry soil
Typereal
Unitm2 hyphae/gram dry soil
Typereal
UnitN/A
Typereal
UnitN/A
Typereal
Missing Value Code:                                                    
Accuracy Report:                                                    
Accuracy Assessment:                                                    
Coverage:                                                    
Methods:                                                    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1644/1/6d3e7212b30ae81dee4172ce7807f84a
Name:Whalen_SOM_formation_potential
Description:Final calculations of SOM formation potential (effective multifunctionality calculated based on fungal contributions to multiple SOM pools), based on the modified averaging approach using Hill numbers (proposed by Byrnes et al. 2023). Columns E-J include the standardized values for each SOM pool that were used in the averaging calculation. Data are outputs from the ‘multifunc’ package in R. Input values can be found in the "Whalen_SOM_pools.csv" file.
Number of Records:27
Number of Columns:12

Table Structure
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Table Column Descriptions
 SampleIDSpecies2Species_namePhylaTotal_C.stdMAOM_C.stdChemStable_C.stdBioStable_C.stdWaterStable_Agg.stdPOM_C.stdmeanFunctioneffective_SOM_multifunctionality
Column Name:SampleID  
Species2  
Species_name  
Phyla  
Total_C.std  
MAOM_C.std  
ChemStable_C.std  
BioStable_C.std  
WaterStable_Agg.std  
POM_C.std  
meanFunction  
effective_SOM_multifunctionality  
Definition:Unique sample identifierSpecies label/abbreviationFull species nameFungal phylum nameStandardized values for total soil carbon concentrationsStandardized values for carbon concentration of mineral-associated organic matter (MAOM) fractionStandardized value for proportion of SOM-C that was chemically stableStandardized value for proportion of SOM-C that was biologically stable (i.e., resisted decomposition by active microbial community during 3 month incubation)Standardized value for water-stable aggregates; proportion of soil mass that was aggregated and water-stableStandardized value for carbon concentration of particulate organic matter (POM) fractionAverage SOM multifunctionality score (i.e., SOM formation potential); calculated using multifunc package in REffective SOM multifunctionality (i.e., SOM formation potential); calculated using multifunc package in R
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Definitiontext
Definitiontext
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAscomycota
DefinitionName of fungal phylum
Source
Code Definition
CodeBasidiomycota
DefinitionName of fungal phylum
Source
Code Definition
CodeMucoromycotina
DefinitionName of fungal phylum
Source
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
UnitN/A
Typereal
UnitN/A
Typereal
Missing Value Code:                        
Accuracy Report:                        
Accuracy Assessment:                        
Coverage:                        
Methods:                        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1644/1/d9ae5cef5c71b8edf4a2d80094c0bd70
Name:Whalen_PyGCMS_whole soil_classes
Description:Relative abundances of chemical compound classes (e.g., aromatics, lipids, etc.) within whole soils characterized by ramped pyrolysis gas chromatography-mass spectrometry (ramped Py-GCMS); temperatures correspond to the stepped temperature of combustion, increasing from 330C to 735C. Compounds that combust at higher temperatures have higher thermal stabilities than those that combust at lower temperatures.
Number of Records:234
Number of Columns:12

Table Structure
Object Name:Whalen_PyGCMS_whole soil_classes.csv
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Field Delimiter:,
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Table Column Descriptions
 SampleIDSpeciesPhylaTempAromaticLigninLipidPolysaccharideN-BearingProteinPhenolUnknown Origin
Column Name:ShortName  
Species  
Phyla  
Temp  
Aromatic  
Lignin  
Lipid  
Polysaccharide  
N-Bearing  
Protein  
Phenol  
Unknown Origin  
Definition:unique sample identifierSpecies name/abbreviationFungal phyla (names)Pyrolysis temperatureRelative abundance of aromatic compoundsRelative abundance of lignin (misclassified; likely fungal melanin)Relative abundance of lipidsRelative abundance of polysaccharidesRelative abundance of N-bearing compoundsRelative abundance of proteinsRelative abundance of phenolsRelative abundance of unknown origin compounds
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Measurement Values Domain:
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeCeu
DefinitionPhacidium lacerum
Source
Code Definition
CodeControl
DefinitionControl (model soils and substrate only; no fungal inoculum)
Source
Code Definition
CodeCsp
DefinitionCylindrium elongatum
Source
Code Definition
CodeHm_ANA
DefinitionHypocrea minutispora (non-sporulating)
Source
Code Definition
CodeHm_TEL
DefinitionHypocrea minutispora (sporulating)
Source
Code Definition
CodeMm
DefinitionMucor mucedo
Source
Code Definition
CodeMr
DefinitionMucor abundans
Source
Code Definition
CodePs
DefinitionPanellus stipticus
Source
Code Definition
CodeRt
DefinitionGymnopus sp.
Source
Code Definition
CodeTk
DefinitionTrichoderma koningii
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAscomycota
DefinitionName of fungal phylum
Source
Code Definition
CodeBasidiomycota
DefinitionName of fungal phylum
Source
Code Definition
CodeControl
DefinitionControl samples (no fungal inoculum; only model soil and substrate)
Source
Code Definition
CodeMucoromycotina
DefinitionName of fungal phylum
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code330
DefinitionPyrolysis thermal fraction, combustion temperature 330C
Source
Code Definition
Code396
DefinitionPyrolysis thermal fraction, combustion temperature 396C
Source
Code Definition
Code444
DefinitionPyrolysis thermal fraction, combustion temperature 444C
Source
Code Definition
Code503
DefinitionPyrolysis thermal fraction, combustion temperature 503C
Source
Code Definition
Code600
DefinitionPyrolysis thermal fraction, combustion temperature 600C
Source
Code Definition
Code735
DefinitionPyrolysis thermal fraction, combustion temperature 735C
Source
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Missing Value Code:                        
Accuracy Report:                        
Accuracy Assessment:                        
Coverage:                        
Methods:                        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1644/1/28fb79cd345d9c04222c835975f0abf4
Name:Whalen_PyGCMS_MAOM_classes
Description:Relative abundances of chemical compound classes (e.g., aromatics, lipids, etc.) within mineral-associated organic matter (MAOM) fraction, characterized by pyrolysis gas chromatography-mass spectrometry (Py-GCMS). Samples were pyrolyzed at a single temperature (600C).
Number of Records:39
Number of Columns:10

Table Structure
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Table Column Descriptions
 Sample_IDSpecies_IDAromaticPhenolLipidPolysaccharideN-BearingProteinLigninUnknown Origin
Column Name:Sample_ID  
Species_ID  
Aromatic  
Phenol  
Lipid  
Polysaccharide  
N-Bearing  
Protein  
Lignin  
Unknown Origin  
Definition:Unique sample identifierSpecies label/abbreviationRelative abundance of aromatic compoundsRelative abundance of phenolsRelative abundance of lipidsRelative abundance of polysaccharidesRelative abundance of N-bearing compoundsRelative abundance of proteinsRelative abundance of "lignin" (misclassified; likely fungal melanin)Relative abundance of compounds with unknown origin
Storage Type:string  
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Measurement Type:nominalnominalratioratioratioratioratioratioratioratio
Measurement Values Domain:
Definitiontext
Definitiontext
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Missing Value Code:                    
Accuracy Report:                    
Accuracy Assessment:                    
Coverage:                    
Methods:                    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1644/1/173f194e3387103d800fe13bc59d3b3e
Name:Whalen_PyGCMS_MAOM_compounds
Description:Relative abundances of individual compounds measured within the MAOM fraction for each fungal isolate (pyrolyzed at single temperature, 600C). Characterized by pyrolysis gas chromatography-mass spectrometry (Py-GCMS).
Number of Records:39
Number of Columns:153

Table Structure
Object Name:Whalen_PyGCMS_MAOM_compounds.csv
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Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 SampleIDSpeciesPhyla(E)-1,3-Butadien-1-ol1 H-Pyrrole, 2-ethyl-1,3,5,7-Cyclooctatetraene1,3,5-Cycloheptatriene1,3,5-Cyclooctatriene1,3-Butadiene1-Butyne, 3,3-dimethyl-1-Heptene1-Hexene, 3-methyl-1H-Inden-1-one, 2,3-dihydro-1H-Indene, 2,3-dihydro-1,1,3-trimethyl-3-phenyl-1H-Pyrrole,1-methyl-1H-Pyrrole,2-methyl-1H-Pyrrole,3-methyl-1H-Pyrrole-2-carboxaldehyde1H-Pyrrole-2-carboxaldehyde,1-methyl-1-Pentene, 3-ethyl-2-methyl-1-Propene, 3-azido-1-Undecanol2(3H)-Benzofuranone, 3-methyl-2(3H)-Furanone, 5-methyl-2(5H)-Furanone2(5H)-Furanone,5-methyl-2,3,5-Trimethylnaphthalene2,3,6-Trimethylnaphthalene2,5-Furandione, 3-methyl-2-Acetylfuran2-Cyclopenten-1-one,2,3-dimethyl-2-Cyclopenten-1-one,2-hydroxy-3-methyl-2-Cyclopenten-1-one,2-methyl-2-Cyclopenten-1-one,3-methyl-2-Furanmethanol2H-1-Benzopyran-2-one2H-Pyran-2-one2-Methylthiophene2-Pentanone2-Propen-1-ol2-Propenenitrile, 2-methyl-2-Propenoic acid,anhydride2-Propenoic acid,ethenyl ester2-Pyridinealdehyde2-Pyridinecarbonitrile3-Acetamidofuran3-Decene3-Methylindole3-Methylthiophene3-Phenylpyridine3-Pyridinecarbonitrile4H-Pyran-4-one, 3-hydroxy-2-methyl-4-Pyridinamine4-Pyridinecarbonitrile4-Pyridinecarboxaldehyde5-Dimethylaminopyrimidine5-Ethyl-2-furaldehyde5H-1-Pyrindine7-TetradeceneAcenaphtheneAcenaphthyleneAcetamide, N-(2,4-dihydroxyphenyl)-Acetic acid, cyano-, ethyl esterAcetophenoneAnilineAnthraceneBenzaldehydeBenzeneBenzene2Benzene,(1,3-dimethylbutyl)-Benzene,(1-methylethyl)-Benzene,1,2,3,4-tetramethyl-Benzene,1,2,3-trimethyl-Benzene,1,2-diethyl-Benzene,1-ethenyl-3-methyl-Benzene,1-ethenyl-4-methoxy-Benzene,1-methoxy-4-methyl-Benzene,butyl-Benzene,heptyl-Benzene,hexyl-Benzene,pentyl-Benzene,propyl-BenzenepropanenitrileBenzofuranBenzofuran,2,3-dihydro-Benzofuran,2-methyl-Benzoic acid, 4-hydroxy-3-methoxy-Vanillic acid)BenzonitrileBenzyl nitrileBiphenylButanal, 2-methyl-C14_alkene_3C8_H16C9_H8Cyanamide, dimethyl-Cyclopent-2-ene-1-one, 2,3,4-trimethyl-CyclopentanoneDimethylbenzofuranDisulfide, dimethylEthylphenolFluorantheneFluoreneFuran,2,3,5-trimethyl-Furan,2,5-dimethyl-Furan,2-ethyl-Furan,2-ethyl-5-methyl-Furan,3-methyl-FurfuralHex-2-yn-4-one, 2-methyl-Hexadecanoic acid, methyl ester (Palmitic acid-C16)HexanedinitrileHydroquinoneIndaneIndoleMethanesulfonic acid, methyl esterMonobenzonem-xyleneNaphthaleneNaphthalene,1,2-dihydro-4-methyl-n-Heptadecanen-HexadecaneNicotinyl Alcoholn-Octanen-Pentadecanen-Triacontane (C30)n-Tridecanen-UndecaneOxirane, ethenyl-p-AminotoluenePhenanthrenePhenol,2,4-bis(1,1-dimethylethyl)-Phenol,2-methoxy- (Guaiacol)Phenol,3,4-dimethyl-Phenol,3-methyl-Phenol,4-methyl-Phosphonic acid, (p-hydroxyphenyl)-Piperidine-2,5-dionePropane, 2-nitro-Propanenitrilep-XylenePyrazolo[5,1-c][1,2,4]benzotriazin-8-olPyridinePyridine2Pyridine 2-methylPyridine 3-methylPyridine, 2-ethylPyridine, 3,5-dimethyl-PyrimidinePyrroleThiopheneTolueneTrimethylphenolVinylfuran
Column Name:SampleID  
Species  
Phyla  
(E)-1,3-Butadien-1-ol  
1 H-Pyrrole, 2-ethyl-  
1,3,5,7-Cyclooctatetraene  
1,3,5-Cycloheptatriene  
1,3,5-Cyclooctatriene  
1,3-Butadiene  
1-Butyne, 3,3-dimethyl-  
1-Heptene  
1-Hexene, 3-methyl-  
1H-Inden-1-one, 2,3-dihydro-  
1H-Indene, 2,3-dihydro-1,1,3-trimethyl-3-phenyl-  
1H-Pyrrole,1-methyl-  
1H-Pyrrole,2-methyl-  
1H-Pyrrole,3-methyl-  
1H-Pyrrole-2-carboxaldehyde  
1H-Pyrrole-2-carboxaldehyde,1-methyl-  
1-Pentene, 3-ethyl-2-methyl-  
1-Propene, 3-azido-  
1-Undecanol  
2(3H)-Benzofuranone, 3-methyl-  
2(3H)-Furanone, 5-methyl-  
2(5H)-Furanone  
2(5H)-Furanone,5-methyl-  
2,3,5-Trimethylnaphthalene  
2,3,6-Trimethylnaphthalene  
2,5-Furandione, 3-methyl-  
2-Acetylfuran  
2-Cyclopenten-1-one,2,3-dimethyl-  
2-Cyclopenten-1-one,2-hydroxy-3-methyl-  
2-Cyclopenten-1-one,2-methyl-  
2-Cyclopenten-1-one,3-methyl-  
2-Furanmethanol  
2H-1-Benzopyran-2-one  
2H-Pyran-2-one  
2-Methylthiophene  
2-Pentanone  
2-Propen-1-ol  
2-Propenenitrile, 2-methyl-  
2-Propenoic acid,anhydride  
2-Propenoic acid,ethenyl ester  
2-Pyridinealdehyde  
2-Pyridinecarbonitrile  
3-Acetamidofuran  
3-Decene  
3-Methylindole  
3-Methylthiophene  
3-Phenylpyridine  
3-Pyridinecarbonitrile  
4H-Pyran-4-one, 3-hydroxy-2-methyl-  
4-Pyridinamine  
4-Pyridinecarbonitrile  
4-Pyridinecarboxaldehyde  
5-Dimethylaminopyrimidine  
5-Ethyl-2-furaldehyde  
5H-1-Pyrindine  
7-Tetradecene  
Acenaphthene  
Acenaphthylene  
Acetamide, N-(2,4-dihydroxyphenyl)-  
Acetic acid, cyano-, ethyl ester  
Acetophenone  
Aniline  
Anthracene  
Benzaldehyde  
Benzene  
Benzene2  
Benzene,(1,3-dimethylbutyl)-  
Benzene,(1-methylethyl)-  
Benzene,1,2,3,4-tetramethyl-  
Benzene,1,2,3-trimethyl-  
Benzene,1,2-diethyl-  
Benzene,1-ethenyl-3-methyl-  
Benzene,1-ethenyl-4-methoxy-  
Benzene,1-methoxy-4-methyl-  
Benzene,butyl-  
Benzene,heptyl-  
Benzene,hexyl-  
Benzene,pentyl-  
Benzene,propyl-  
Benzenepropanenitrile  
Benzofuran  
Benzofuran,2,3-dihydro-  
Benzofuran,2-methyl-  
Benzoic acid, 4-hydroxy-3-methoxy-Vanillic acid)  
Benzonitrile  
Benzyl nitrile  
Biphenyl  
Butanal, 2-methyl-  
C14_alkene_3  
C8_H16  
C9_H8  
Cyanamide, dimethyl-  
Cyclopent-2-ene-1-one, 2,3,4-trimethyl-  
Cyclopentanone  
Dimethylbenzofuran  
Disulfide, dimethyl  
Ethylphenol  
Fluoranthene  
Fluorene  
Furan,2,3,5-trimethyl-  
Furan,2,5-dimethyl-  
Furan,2-ethyl-  
Furan,2-ethyl-5-methyl-  
Furan,3-methyl-  
Furfural  
Hex-2-yn-4-one, 2-methyl-  
Hexadecanoic acid, methyl ester (Palmitic acid-C16)  
Hexanedinitrile  
Hydroquinone  
Indane  
Indole  
Methanesulfonic acid, methyl ester  
Monobenzone  
m-xylene  
Naphthalene  
Naphthalene,1,2-dihydro-4-methyl-  
n-Heptadecane  
n-Hexadecane  
Nicotinyl Alcohol  
n-Octane  
n-Pentadecane  
n-Triacontane (C30)  
n-Tridecane  
n-Undecane  
Oxirane, ethenyl-  
p-Aminotoluene  
Phenanthrene  
Phenol,2,4-bis(1,1-dimethylethyl)-  
Phenol,2-methoxy- (Guaiacol)  
Phenol,3,4-dimethyl-  
Phenol,3-methyl-  
Phenol,4-methyl-  
Phosphonic acid, (p-hydroxyphenyl)-  
Piperidine-2,5-dione  
Propane, 2-nitro-  
Propanenitrile  
p-Xylene  
Pyrazolo[5,1-c][1,2,4]benzotriazin-8-ol  
Pyridine  
Pyridine2  
Pyridine 2-methyl  
Pyridine 3-methyl  
Pyridine, 2-ethyl  
Pyridine, 3,5-dimethyl-  
Pyrimidine  
Pyrrole  
Thiophene  
Toluene  
Trimethylphenol  
Vinylfuran  
Definition:Unique sample identifierSpecies nameFungal phylum (name)Chemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound name
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Measurement Type:nominalnominalnominalratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
Definitiontext
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAscomycota
DefinitionFungal phylum (name)
Source
Code Definition
CodeBasidiomycota
DefinitionFungal phylum (name)
Source
Code Definition
CodeControl
DefinitionControl (no fungal inoculum; model soil and substrate only)
Source
Code Definition
CodeMucoromycotina
DefinitionFungal phylum (name)
Source
Unitpercent
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Missing Value Code:                                                                                                                                                                                                                                                                                                                  
Accuracy Report:                                                                                                                                                                                                                                                                                                                  
Accuracy Assessment:                                                                                                                                                                                                                                                                                                                  
Coverage:                                                                                                                                                                                                                                                                                                                  
Methods:                                                                                                                                                                                                                                                                                                                  

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1644/1/4b262a6bdc2e2537e384a9149d96af18
Name:Whalen_PyGCMS_whole soil_compounds
Description:Relative abundances of individual compounds within whole soils, characterized by ramped pyrolysis gas chromatography-mass spectrometry (ramped Py-GCMS). "Temp" column corresponds with the temperature at which samples were pyrolyzed, ranging from 330C to 735C. Compounds that combust at higher temperatures have greater thermal stabilities than those that combust at lower temperatures.
Number of Records:234
Number of Columns:202

Table Structure
Object Name:Whalen_PyGCMS_whole soil_compounds.csv
Size:213739 byte
Authentication:dcd89fb29239cb2a90037dc4ee2485a3 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 SampleIDSpeciesPhylaTemp(E)-1,3-Butadien-1-ol1 H-Pyrrole, 2-ethyl-1,2,3-Benzenetriol1,2-Benzenediol, 3-methoxy-1,3,5,7-Cyclooctatetraene1,3,5-Cycloheptatriene1,3,5-Cyclooctatriene1,3-Butadiene1,3-Octadiene1-Heptene1-Hexadecene1-Hexene, 3-methyl-1H-Inden-1-one, 2,3-dihydro-1H-Indene, 2,3-dihydro-1,1,3-trimethyl-3-phenyl-1H-Pyrrole, 1-methyl-1H-Pyrrole, 2-methyl-1H-Pyrrole, 3-methyl-1H-Pyrrole-2-carboxaldehyde1H-Pyrrole-2-carboxaldehyde, 1-methyl-1H-Tetrazole, 1-methyl-1-Propene, 3-azido-1-Undecanol2(3H)-Benzofuranone, 3-methyl-2(3H)-Furanone, 5-methyl-2(5H)-Furanone2(5H)-Furanone, 5-methyl-2,3,5-Trimethylnaphthalene2,3,6-Trimethylnaphthalene2,5-Furandione, 3-methyl-2,6-Di-tert-butylbenzoquinone2-Acetylfuran2-Amino-4-methylpyrimidine2-Butanone, 3,3-dimethyl-2-Butenedioic acid, 2-methyl-, (E)-2-Cyclohexen-1-one2-Cyclopenten-1-one, 2,3-dimethyl-2-Cyclopenten-1-one, 2-hydroxy-3-methyl-2-Cyclopenten-1-one, 2-methyl-2-Cyclopenten-1-one, 3-methyl-2-Furanmethanol2H-1-Benzopyran-2-one2H-Pyran-2-one2-Methylthiophene2-Naphthalenol, 3-methoxy-2-Propen-1-ol2-Propenenitrile, 2-methyl-2-Propenoic acid, anhydride2-Propyn-1-amine2-Pyridinealdehyde2-Pyridinecarbonitrile2-Pyrimidinamine3-Acetamidofuran3-Decene3-Furaldehyde3-Methylindole3-Methylpyridazine3-Methylthiophene3-Methylthiophene-2-carbonitrile3-Penten-2-one, (E)-3-Phenylpyridine3-Pyridinecarbonitrile3-Pyridinol4(1H)-Pyridinone, 2,3-dihydro-1-methyl-4H-Pyran-4-one, 3-hydroxy-2-methyl-4-Hydroxy-2-methylacetophenone4-Pyridinamine4-Pyridinecarbonitrile4-Pyridinecarboxaldehyde5-Dimethylaminopyrimidine5-Ethyl-2-furaldehyde5H-1-Pyrindine6-Methyl-1,2,3,4-tetrahydroquinoline7-Methylindan-1-one7-TetradeceneAcenaphtheneAcenaphthyleneAcetamide, N-(2,4-dihydroxyphenyl)-AcetophenoneAnilineAnthraceneBenzaldehydeBenzaldehyde, 4-methoxy-BenzeneBenzene2Benzene, (1,3-dimethylbutyl)-Benzene, (1-methylethyl)-Benzene, 1,2,3,4-tetramethyl-Benzene, 1,2,3-trimethyl-Benzene, 1,2-diethyl-Benzene, 1,3-bis(1,1-dimethylethyl)-Benzene, 1-ethenyl-3-methyl-Benzene, 1-ethenyl-4-methoxy-Benzene, 1-ethyl-4-methoxy-Benzene, 1-methoxy-4-methyl-Benzene, 2,4-diisocyanato-1-methyl-Benzene, butyl-Benzene, heptyl-Benzene, hexyl-Benzene, pentyl-Benzene, propyl-BenzenepropanenitrileBenzo[a]anthraceneBenzofuranBenzofuran, 2,3-dihydro-Benzofuran, 2-methyl-Benzoic acid, 4-hydroxy-3-methoxy-Vanillic acid)BenzonitrileBenzyl nitrileBiphenylButanal, 2-methyl-C11_H12C14_alkene_3C8_H16C9_H8Cyanamide, dimethyl-Cyclopent-2-ene-1-one, 2,3,4-trimethyl-CyclopentanoneDiethyltoluamide (DEET)Dimethyl trisulfideDimethylbenzofuranDimethylpyrrole (2,5 or 2,4)D-LimoneneEthanone, 1-(1-methyl-1H-pyrrol-2-yl)-EthylbenzeneEthylphenolFluorantheneFluoreneFuran, 2,3,5-trimethyl-Furan, 2,4-dimethyl-Furan, 2,5-dimethyl-Furan, 2-ethyl-Furan, 2-ethyl-5-methyl-Furan, 3-methyl-FurfuralFurfural, 5-methyl-Hex-2-yn-4-one, 2-methyl-HydroquinoneIndaneIndoleLevoglucosanLevoglucosenoneMequinolMethanesulfonic acid, methyl esterMonobenzonem-xyleneNaphthaleneNaphthalene, 1,2-dihydro-4-methyl-N-Butyl-tert-butylaminen-Decanen-Hentriacontane (C31)n-Heptacosane (C27)n-Heptadecanen-Heptanen-Hexacosane (C26)n-HexadecaneNicotinyl Alcoholn-Nonacosane (C29)n-Nonanen-Octanen-Pentacosane (C25)n-Pentadecanen-Tetracosanen-Triacontane (C30)n-Tricosane (C23)n-TridecaneOxirane, ethenyl-p-AminotoluenePentadecane, 7-methylPentadecanoic acid, 14-methyl-, methyl esterPhenolPhenol, 2,4-bis(1,1-dimethylethyl)-Phenol, 2-methoxy- (Guaiacol)Phenol, 2-methoxy-4-methyl- (4-Methylguaiacol)Phenol, 2-Methoxy-4-vinyl- (Vinylguaiacol)Phenol, 3,4-dimethyl-Phenol, 3-methyl-Phenol, 4-ethyl-2,6-dimethoxy- (Ethylsyringol)Phenol, 4-ethyl-2-methoxy- (Ethylguaiacol)Phenol, 4-methyl-Phosphonic acid, (p-hydroxyphenyl)-Piperidine-2,5-dionePropanenitrilep-XylenePyrazolo[5,1-c][1,2,4]benzotriazin-8-olPyridinePyridine2Pyridine 3-methylPyridine, 2-ethylPyridine, 3,5-dimethyl-PyrimidinePyrrolePyrrolidine, 1-nitrosoResorcinol (Dihydroxybenzene)StyreneThiopheneTolueneTrimethylphenolVinylfuran
Column Name:SampleID  
Species  
Phyla  
Temp  
(E)-1,3-Butadien-1-ol  
1 H-Pyrrole, 2-ethyl-  
1,2,3-Benzenetriol  
1,2-Benzenediol, 3-methoxy-  
1,3,5,7-Cyclooctatetraene  
1,3,5-Cycloheptatriene  
1,3,5-Cyclooctatriene  
1,3-Butadiene  
1,3-Octadiene  
1-Heptene  
1-Hexadecene  
1-Hexene, 3-methyl-  
1H-Inden-1-one, 2,3-dihydro-  
1H-Indene, 2,3-dihydro-1,1,3-trimethyl-3-phenyl-  
1H-Pyrrole, 1-methyl-  
1H-Pyrrole, 2-methyl-  
1H-Pyrrole, 3-methyl-  
1H-Pyrrole-2-carboxaldehyde  
1H-Pyrrole-2-carboxaldehyde, 1-methyl-  
1H-Tetrazole, 1-methyl-  
1-Propene, 3-azido-  
1-Undecanol  
2(3H)-Benzofuranone, 3-methyl-  
2(3H)-Furanone, 5-methyl-  
2(5H)-Furanone  
2(5H)-Furanone, 5-methyl-  
2,3,5-Trimethylnaphthalene  
2,3,6-Trimethylnaphthalene  
2,5-Furandione, 3-methyl-  
2,6-Di-tert-butylbenzoquinone  
2-Acetylfuran  
2-Amino-4-methylpyrimidine  
2-Butanone, 3,3-dimethyl-  
2-Butenedioic acid, 2-methyl-, (E)-  
2-Cyclohexen-1-one  
2-Cyclopenten-1-one, 2,3-dimethyl-  
2-Cyclopenten-1-one, 2-hydroxy-3-methyl-  
2-Cyclopenten-1-one, 2-methyl-  
2-Cyclopenten-1-one, 3-methyl-  
2-Furanmethanol  
2H-1-Benzopyran-2-one  
2H-Pyran-2-one  
2-Methylthiophene  
2-Naphthalenol, 3-methoxy-  
2-Propen-1-ol  
2-Propenenitrile, 2-methyl-  
2-Propenoic acid, anhydride  
2-Propyn-1-amine  
2-Pyridinealdehyde  
2-Pyridinecarbonitrile  
2-Pyrimidinamine  
3-Acetamidofuran  
3-Decene  
3-Furaldehyde  
3-Methylindole  
3-Methylpyridazine  
3-Methylthiophene  
3-Methylthiophene-2-carbonitrile  
3-Penten-2-one, (E)-  
3-Phenylpyridine  
3-Pyridinecarbonitrile  
3-Pyridinol  
4(1H)-Pyridinone, 2,3-dihydro-1-methyl-  
4H-Pyran-4-one, 3-hydroxy-2-methyl-  
4-Hydroxy-2-methylacetophenone  
4-Pyridinamine  
4-Pyridinecarbonitrile  
4-Pyridinecarboxaldehyde  
5-Dimethylaminopyrimidine  
5-Ethyl-2-furaldehyde  
5H-1-Pyrindine  
6-Methyl-1,2,3,4-tetrahydroquinoline  
7-Methylindan-1-one  
7-Tetradecene  
Acenaphthene  
Acenaphthylene  
Acetamide, N-(2,4-dihydroxyphenyl)-  
Acetophenone  
Aniline  
Anthracene  
Benzaldehyde  
Benzaldehyde, 4-methoxy-  
Benzene  
Benzene2  
Benzene, (1,3-dimethylbutyl)-  
Benzene, (1-methylethyl)-  
Benzene, 1,2,3,4-tetramethyl-  
Benzene, 1,2,3-trimethyl-  
Benzene, 1,2-diethyl-  
Benzene, 1,3-bis(1,1-dimethylethyl)-  
Benzene, 1-ethenyl-3-methyl-  
Benzene, 1-ethenyl-4-methoxy-  
Benzene, 1-ethyl-4-methoxy-  
Benzene, 1-methoxy-4-methyl-  
Benzene, 2,4-diisocyanato-1-methyl-  
Benzene, butyl-  
Benzene, heptyl-  
Benzene, hexyl-  
Benzene, pentyl-  
Benzene, propyl-  
Benzenepropanenitrile  
Benzo[a]anthracene  
Benzofuran  
Benzofuran, 2,3-dihydro-  
Benzofuran, 2-methyl-  
Benzoic acid, 4-hydroxy-3-methoxy-Vanillic acid)  
Benzonitrile  
Benzyl nitrile  
Biphenyl  
Butanal, 2-methyl-  
C11_H12  
C14_alkene_3  
C8_H16  
C9_H8  
Cyanamide, dimethyl-  
Cyclopent-2-ene-1-one, 2,3,4-trimethyl-  
Cyclopentanone  
Diethyltoluamide (DEET)  
Dimethyl trisulfide  
Dimethylbenzofuran  
Dimethylpyrrole (2,5 or 2,4)  
D-Limonene  
Ethanone, 1-(1-methyl-1H-pyrrol-2-yl)-  
Ethylbenzene  
Ethylphenol  
Fluoranthene  
Fluorene  
Furan, 2,3,5-trimethyl-  
Furan, 2,4-dimethyl-  
Furan, 2,5-dimethyl-  
Furan, 2-ethyl-  
Furan, 2-ethyl-5-methyl-  
Furan, 3-methyl-  
Furfural  
Furfural, 5-methyl-  
Hex-2-yn-4-one, 2-methyl-  
Hydroquinone  
Indane  
Indole  
Levoglucosan  
Levoglucosenone  
Mequinol  
Methanesulfonic acid, methyl ester  
Monobenzone  
m-xylene  
Naphthalene  
Naphthalene, 1,2-dihydro-4-methyl-  
N-Butyl-tert-butylamine  
n-Decane  
n-Hentriacontane (C31)  
n-Heptacosane (C27)  
n-Heptadecane  
n-Heptane  
n-Hexacosane (C26)  
n-Hexadecane  
Nicotinyl Alcohol  
n-Nonacosane (C29)  
n-Nonane  
n-Octane  
n-Pentacosane (C25)  
n-Pentadecane  
n-Tetracosane  
n-Triacontane (C30)  
n-Tricosane (C23)  
n-Tridecane  
Oxirane, ethenyl-  
p-Aminotoluene  
Pentadecane, 7-methyl  
Pentadecanoic acid, 14-methyl-, methyl ester  
Phenol  
Phenol, 2,4-bis(1,1-dimethylethyl)-  
Phenol, 2-methoxy- (Guaiacol)  
Phenol, 2-methoxy-4-methyl- (4-Methylguaiacol)  
Phenol, 2-Methoxy-4-vinyl- (Vinylguaiacol)  
Phenol, 3,4-dimethyl-  
Phenol, 3-methyl-  
Phenol, 4-ethyl-2,6-dimethoxy- (Ethylsyringol)  
Phenol, 4-ethyl-2-methoxy- (Ethylguaiacol)  
Phenol, 4-methyl-  
Phosphonic acid, (p-hydroxyphenyl)-  
Piperidine-2,5-dione  
Propanenitrile  
p-Xylene  
Pyrazolo[5,1-c][1,2,4]benzotriazin-8-ol  
Pyridine  
Pyridine2  
Pyridine 3-methyl  
Pyridine, 2-ethyl  
Pyridine, 3,5-dimethyl-  
Pyrimidine  
Pyrrole  
Pyrrolidine, 1-nitroso  
Resorcinol (Dihydroxybenzene)  
Styrene  
Thiophene  
Toluene  
Trimethylphenol  
Vinylfuran  
Definition:Unique sample identifierSpecies labelFungal phylum namePyrolysis temperatureChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound nameChemical compound name
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Measurement Type:nominalnominalnominalnominalratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeCeu
DefinitionPhacidium lacerum
Source
Code Definition
CodeControl
DefinitionControl (no fungal inoculum)
Source
Code Definition
CodeCsp
DefinitionCylindrium elongatum
Source
Code Definition
CodeHm_ANA
DefinitionHypocrea minutispora (non-sporulating)
Source
Code Definition
CodeHm_TEL
DefinitionHypocrea minutispora (sporulating)
Source
Code Definition
CodeMm
DefinitionMucor mucedo
Source
Code Definition
CodeMr
DefinitionMucor abundans
Source
Code Definition
CodePs
DefinitionPanellus stipticus
Source
Code Definition
CodeRt
DefinitionGymnopus sp.
Source
Code Definition
CodeTk
DefinitionTrichoderma koningii
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAscomycota
DefinitionFungal phylum (name)
Source
Code Definition
CodeBasidiomycota
DefinitionFungal phylum (name)
Source
Code Definition
CodeControl
DefinitionControl (no fungal inoculum)
Source
Code Definition
CodeMucoromycotina
DefinitionFungal phylum (name)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code330
DefinitionPyrolysis thermal fraction; combustion temperature 330C
Source
Code Definition
Code396
DefinitionPyrolysis thermal fraction; combustion temperature 396C
Source
Code Definition
Code444
DefinitionPyrolysis thermal fraction; combustion temperature 444C
Source
Code Definition
Code503
DefinitionPyrolysis thermal fraction; combustion temperature 503C
Source
Code Definition
Code600
DefinitionPyrolysis thermal fraction; combustion temperature 600C
Source
Code Definition
Code735
DefinitionPyrolysis thermal fraction; combustion temperature 735C
Source
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Missing Value Code:                                                                                                                                                                                                                                                                                                                                                                                                                    
Accuracy Report:                                                                                                                                                                                                                                                                                                                                                                                                                    
Accuracy Assessment:                                                                                                                                                                                                                                                                                                                                                                                                                    
Coverage:                                                                                                                                                                                                                                                                                                                                                                                                                    
Methods:                                                                                                                                                                                                                                                                                                                                                                                                                    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1644/1/0d361415bfdfe662d3f605b3f128a4fc
Name:Whalen_sequential_extraction_data
Description:Total organic carbon concentrations and total dissolved nitrogen concentrations in water, KCl and sodium pyrophosphate extracts. Soils with SOM formed by different fungal isolates were subjected to a sequential extraction with water first, then KCl and finally sodium pyrophosphate.
Number of Records:112
Number of Columns:6

Table Structure
Object Name:Whalen_sequential_extraction_data.csv
Size:6729 byte
Authentication:f0f8df54d1d032ddee65a065b10005b3 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 SampleIDExtractSpeciesPhylumTOC_mg_LTDN
Column Name:SampleID  
Extract  
Species  
Phylum  
TOC_mg_L  
TDN  
Definition:Unique sample identifierExtractant type (water, KCl or sodium pyrophosphate)Species label/abbreviationFungal phyla (names)Total organic carbon in extractTotal dissolved nitrogen in extract
Storage Type:string  
string  
string  
string  
float  
float  
Measurement Type:nominalnominalnominalnominalratioratio
Measurement Values Domain:
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeKCl
DefinitionExtractant, sodium chloride
Source
Code Definition
CodeSodium pyrophosphate
DefinitionExtractant
Source
Code Definition
Codewater
DefinitionExtractant
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeCeu
DefinitionPhacidium lacerum
Source
Code Definition
CodeControl
DefinitionControl sample (no fungal inoculum; model soil and substrate only)
Source
Code Definition
CodeCsp
DefinitionCylindrium elongatum
Source
Code Definition
CodeHm_anamorph
DefinitionHypocrea minutispora (non-sporulating)
Source
Code Definition
CodeHm_teleomorph
DefinitionHypocrea minutispora (sporulating)
Source
Code Definition
CodeMm
DefinitionMucor mucedo
Source
Code Definition
CodeMr
DefinitionMucor abundans
Source
Code Definition
CodePs
DefinitionPanellus stipticus
Source
Code Definition
CodeRt
DefinitionGymnopus sp.
Source
Code Definition
CodeTk
DefinitionTrichoderma koningii
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAscomycota
DefinitionFungal phylum
Source
Code Definition
CodeBasidiomycota
DefinitionFungal phylum
Source
Code Definition
CodeControl
DefinitionControl samples (no fungal inoculum; model soil and substrate only)
Source
Code Definition
CodeMucoromycotina
DefinitionFungal phylum
Source
Unitmg C/L
Typereal
Unitmg N/L
Typereal
Missing Value Code:            
Accuracy Report:            
Accuracy Assessment:            
Coverage:            
Methods:            

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
(No thesaurus)microbial traits, multifunctionality, carbon stabilization
LTER Controlled Vocabularysoil organic matter, fungi, soil carbon

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Fungal isolates were incubated axenically in model soils (mixtures of sand, silt and clay that were treated to be initially organic matter free). Eight different fungal isolates were incubated for between ~3-6 months with glucose as a primary C-supplying substrate, such that any organic matter that formed could be directly attributed to an individual fungal isolate and its associated traits. Separate control samples were established that included only the model soil mixture and substrate (uninoculated; no fungal growth). We characterized a suite of fungal physiological, morphological and biochemical traits for each fungal isolate, and measured their respective contributions to multiple soil organic matter (SOM) pools, including total C, mineral-associated and particulate organic matter, water-stable aggregates and stable sub-fractions of the total SOM pool. We evaluated relationships between fungal traits and relative contributions to SOM pools using a variety of statistical methods. The chemistry of SOM produced by each of the fungal isolates was also characterized by ramped pyrolysis gas chromatography-mass spectrometry (Py-GC/MS), allowing us to assess the chemistry of SOM produced by each isolate and its relative thermal stability. Additional details on methodological approaches are available upon request, and will be available in a forthcoming publication by the same name (Whalen et al., Microbial trait multifunctionality drives soil organic matter formation potential).

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Emily Whalen
Organization:Past: University of New Hampshire; Current: Critical Ecology Lab
Email Address:
ewhalen.cel@gmail.com
Id:https://orcid.org/0000-0001-9269-289X
Individual: Serita Frey
Organization:University of New Hampshire
Email Address:
serita.frey@unh.edu
Id:https://orcid.org/0000-0002-9221-5919
Individual: Stuart Grandy
Organization:University of New Hampshire
Email Address:
stuart.grandy@unh.edu
Id:https://orcid.org/0000-0002-3214-2295
Individual: Kevin Geyer
Organization:Young Harris College
Email Address:
kmgeyer@yhc.edu
Id:https://orcid.org/0000-0002-5218-2745
Individual: Eric Morrison
Organization:University of New Hampshire
Email Address:
eric.morrison@unh.edu
Id:https://orcid.org/0000-0002-9737-9947
Contacts:
Individual: Emily Whalen
Email Address:
ewhalen.cel@gmail.com
Id:https://orcid.org/0000-0001-9269-289X

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2020
End:
2023
Geographic Region:
Description:Fungal isolates were collected from soil, litter and wood at the Harvard Forest, LTER in Petersham, MA. All lab work was conducted at the University of New Hampshire main campus in Durham, NH.
Bounding Coordinates:
Northern:  42.553421Southern:  42.52796
Western:  -72.190697Eastern:  -72.167098

Project

Parent Project Information:

Title:Fungal traits associated with the formation of soil organic matter pools
Personnel:
Individual: Emily Whalen
Organization:University of New Hampshire
Email Address:
ewhalen.cel@gmail.com
Id:https://orcid.org/0000-0001-9269-289X
Role:Conceived of the concept for the study, led laboratory work and sample analysis to produce the associated dataset
Individual: Serita Frey
Organization:University of New Hampshire
Email Address:
serita.frey@unh.edu
Role:Conceived of the study, contributed to experimental design and methodological development, oversaw sample analysis
Individual: Stuart Grandy
Organization:University of New Hampshire
Email Address:
stuart.grandy@unh.edu
Role:Conceived of the study, contributed to experimental design and methodological development, oversaw Py-GC/MS analysis
Individual: Kevin Geyer
Email Address:
kmgeyer@yhc.edu
Role:Contributed to experimental design and methodological development, provided guidance on 18O-water incorporation method for CUE analysis
Individual: Eric Morrison
Email Address:
eric.morrison@unh.edu
Role:Contributed to experimental design and methodological development, collected optimum growth rate and carbon use efficiency data for fungal isolates, provided guidance on additional growth rate and CUE analyses in soils
Additional Award Information:
Funder:U.S. Department of Agriculture National Institute of Food and Agriculture
Funder ID:Hatch NH-00701
Number:NHAES Scientific Contribution Number 3001
Title:New Hampshire Agricultural Experiment Station
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n      '
        |___element 'metadata'
        |     |___text '\n         '
        |     |___element 'unitList'
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'micrograms biomass-C produced/biomass-C/hour'
        |     |     |     |  \___attribute 'name' = 'micrograms biomass-C produced/biomass-C/hour'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Standardized value following methods outlined by Byrnes et al. (2023); averaging approach for calculating multifunctionality using Hill numbers'
        |     |     |     |___text '\n            '
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        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'Units of carbon'
        |     |     |     |  \___attribute 'name' = 'Units of carbon'
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        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Standardized values (output from \'multifunc\' package in R) from averaging approach to calculate multifunctionality using Hill numbers (sensu Byrnes et al., 2023)'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'mg melanin/mg biomass'
        |     |     |     |  \___attribute 'name' = 'mg melanin/mg biomass'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Standardized values (output from \'multifunc\' package in R) from averaging approach to calculate multifunctionality using Hill numbers (sensu Byrnes et al., 2023)'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'Days'
        |     |     |     |  \___attribute 'name' = 'Days'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Standardized values (output from \'multifunc\' package in R) from averaging approach to calculate multifunctionality using Hill numbers (sensu Byrnes et al., 2023)'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'micromoles substrate/hour/gram dry soil'
        |     |     |     |  \___attribute 'name' = 'micromoles substrate/hour/gram dry soil'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |___text '\n            '
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        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'meters hyphae/gram dry soil'
        |     |     |     |  \___attribute 'name' = 'meters hyphae/gram dry soil'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'm^2 hyphae/gram dry soil'
        |     |     |     |  \___attribute 'name' = 'm^2 hyphae/gram dry soil'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'micrograms biomass-C produced biomass-C-1 hr-1'
        |     |     |     |  \___attribute 'name' = 'micrograms biomass-C produced biomass-C-1 hr-1'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Standardized values (output from \'multifunc\' package in R) from averaging approach to calculate multifunctionality using Hill numbers (sensu Byrnes et al., 2023)'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'micromoles substrate h-1 g-1 dry soil'
        |     |     |     |  \___attribute 'name' = 'micromoles substrate h-1 g-1 dry soil'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Standardized values (output from \'multifunc\' package in R) from averaging approach to calculate multifunctionality using Hill numbers (sensu Byrnes et al., 2023)'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'meters hyphae/g dry soil'
        |     |     |     |  \___attribute 'name' = 'meters hyphae/g dry soil'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Standardized values (output from \'multifunc\' package in R) from averaging approach to calculate multifunctionality using Hill numbers (sensu Byrnes et al., 2023)'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'm2 hyphae/gram dry soil'
        |     |     |     |  \___attribute 'name' = 'm2 hyphae/gram dry soil'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Standardized values (output from \'multifunc\' package in R) from averaging approach to calculate multifunctionality using Hill numbers (sensu Byrnes et al., 2023)'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'N/A'
        |     |     |     |  \___attribute 'name' = 'N/A'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Effective multifunctionality representing fungal contributions to multiple SOM pools, calculated using averaging approach and Hill numbers proposed by Byrnes et al. (2023); output from multifunc package in R.'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'mg C/L'
        |     |     |     |  \___attribute 'name' = 'mg C/L'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'mg N/L'
        |     |     |     |  \___attribute 'name' = 'mg N/L'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |___text '\n            '
        |     |     |___text '\n         '
        |     |___text '\n      '
        |___text '\n   '

Additional Metadata

additionalMetadata
        |___text '\n      '
        |___element 'metadata'
        |     |___text '\n         '
        |     |___element 'emlEditor'
        |     |        \___attribute 'app' = 'ezEML'
        |     |        \___attribute 'release' = '2024.05.22'
        |     |___text '\n      '
        |___text '\n   '

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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