Data Package Metadata View Summary

The Bacterial Community in a Coal Mine in Shanxi Province

General Information

Data Package:

Local Identifier:

edi.1743.1

Title:

The Bacterial Community in a Coal Mine in Shanxi Province

Alternate Identifier:

DOI PLACE HOLDER

Abstract:

In order to reveal the influence of coal mining activities on the characteristics of bacterial community structure in coal seams, 16S rRNA gene amplicon sequencing technology was used to analyze the bacterial community in the coal mine in Shanxi Province. The results showed that mining activities greatly influenced the α diversity of the microbial community, mainly due to the introduction of surface microorganisms by ventilation and mechanical mining. Actinobacteriota and Proteobacteria accounted for more than 85 % of the phylum level of each bacterial community. At the genus level, the relative abundance varied greatly. In general, Achromobacter, Dietzia, Pseudonocardia, Nesterenkonia, Arthrobacter, Moraxellaceae, Hydrogenophaga and Methylomicrobium were dominant. The bacterial community was divided into three categories, which were distributed in the mining working face, the main airway and tunneling roadways, the roadway roof and the unexposed coal seam.

Publication Date:

2024-08-11

For more information:
Visit:	DOI PLACE HOLDER

Time Period

Begin:

2023

End:

2024

People and Organizations
Contact:	Xu, Lianman (School of Environmental Science, Liaoning University) [ email ]
Creator:	Xu, Lianman (School of Environmental Science, Liaoning University)
Creator:	Zhang, Runjie (School of Environmental Science, Liaoning University)

Data Entities
Data Table Name:	otu_summary
Description:	Classification of bacteria at different points
Other Name:	photographs
Description:	1. The schematic diagram of sampling position. 2. Diversity index. 3. The abundance of bacterial communities at the phylum level in each sample point. 4. The abundance of bacterial community at genus level in each sample point. 5. Venn diagram of bacterial community in each sample point.

Detailed Metadata

Data Entities

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/1743/1/2eb2332f5cf5a487fb1c1c888a241bfc
Name:	otu_summary
Description:	Classification of bacteria at different points
Number of Records:	103
Number of Columns:	7

Table Structure

Object Name:

otu_summary.csv

Size:

27594 byte

Authentication:

94e14c103d4e1dda2d2e15ab70112e04 Calculated By MD5

Text Format:

Number of Header Lines:

1

Record Delimiter:

\r\n

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

OTU ID

RR

MW

TR

MA

UC

taxonomy

Column Name:

OTU ID

RR

MW

TR

MA

UC

taxonomy

Definition:

Number of species

species of roadway roof

species of mining working face

species of tunneling roadway

species of main airway

species of unexposed coal seam

The scientific name of species

Storage Type:

string

string

string

string

string

string

string

Measurement Type:

nominal

nominal

nominal

nominal

nominal

nominal

nominal

Measurement Values Domain:

Definition

text

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	0
Definition	the species does not exist,
Source

Code Definition

Code	1
Definition	the species is detected
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	0
Definition	the species does not exist
Source

Code Definition

Code	1
Definition	the species is detected
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	0
Definition	the species does not exist
Source

Code Definition

Code	1
Definition	the species is detected
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	0
Definition	the species does not exist
Source

Code Definition

Code	1
Definition	the species is detected
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	0
Definition	the species does not exist
Source

Code Definition

Code	1
Definition	the species is detected
Source

Definition

text

Missing Value Code:

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Non-Categorized Data Resource

Name:

photographs

Entity Type:

photograph

Description:

1. The schematic diagram of sampling position. 2. Diversity index. 3. The abundance of bacterial communities at the phylum level in each sample point. 4. The abundance of bacterial community at genus level in each sample point. 5. Venn diagram of bacterial community in each sample point.

Physical Structure Description:

Object Name:

Related pictures.docx

Size:

652018 byte

Authentication:

8c27d34224726c11410ad9aa9979166b Calculated By MD5

Externally Defined Format:

Format Name:

application/vnd.openxmlformats-officedocument.wordprocessingml.document

Data:

https://pasta-s.lternet.edu/package/data/eml/edi/1743/1/159dbc1c76cc6320df1df8eabb3892b6

Data Package Usage Rights

This data package is released to the "public domain" under Creative Commons CC0 1.0 "No Rights Reserved" (see: https://creativecommons.org/publicdomain/zero/1.0/). It is considered professional etiquette to provide attribution of the original work if this data package is shared in whole or by individual components. A generic citation is provided for this data package on the website https://portal.edirepository.org (herein "website") in the summary metadata page. Communication (and collaboration) with the creators of this data package is recommended to prevent duplicate research or publication. This data package (and its components) is made available "as is" and with no warranty of accuracy or fitness for use. The creators of this data package and the website shall not be liable for any damages resulting from misinterpretation or misuse of the data package or its components. Periodic updates of this data package may be available from the website. Thank you.

Keywords

By Thesaurus:
(No thesaurus)	coal mining impacts, bacterial community, microbial diversity, high-throughput sequencing
LTER Controlled Vocabulary	bacteria

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package

Description:

Genomic DNA was extracted, and then the extracted genomic DNA was detected by 1 % agarose gel electrophoresis. The bacterial universal primers 338F ( ACTCCTACGGGAGGCAGCAG ) and 806R ( GGACTACHVGGGTWTCTAAT ) were used to amplify the V3-V4 region of 16S rDNA, and each sample was repeated three times.

People and Organizations

Publishers:

Organization:

Environmental Data Initiative

Email Address:

info@edirepository.org

Web Address:

https://edirepository.org

Id:

https://ror.org/0330j0z60

Creators:

Individual:

professor Lianman Xu

Organization:

School of Environmental Science, Liaoning University

Email Address:

xulianman@lnu.edu.cn

Id:

https://orcid.org/0000-0001-9777-9310

Individual:

Runjie Zhang

Organization:

School of Environmental Science, Liaoning University

Email Address:

runjie326@163.com

Id:

https://orcid.org/0009-0002-4607-362X

Contacts:

Individual:

professor Lianman Xu

Organization:

School of Environmental Science, Liaoning University

Email Address:

xulianman@lnu.edu.cn

Id:

https://orcid.org/0000-0001-9777-9310

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period

Begin:

2023

End:

2024

Geographic Region:

Description:

This study takes a mine in Shanxi Province as the research object. The coal mine is located in Changzhi City, Shanxi Province, China. The surface is covered mainly by Quaternary loess, and the bedrock is sporadic. The northern part is a low mountain area of structural erosion, with developed internal gullies and complex terrain; the southern is gentler terrain. The terrain of the minefield is generally high in the north and low in the southwest.

Bounding Coordinates:

Northern:	36.42583333333334	Southern:	36.261944444444445
Western:	112.79805555555555	Eastern:	112.90694444444445

Project

Parent Project Information:

Title:

Bacterial Community

Personnel:

Individual:

Lianman Xu

Organization:

School of Environmental Science, Liaoning University

Position:

vice president

Email Address:

xulianman@lnu.edu.cn

Id:

https://orcid.org/0000-0001-9777-9310

Role:

The manuscript was mainly written by LMX

Individual:

Runjie Zhang

Email Address:

runjie326@163.com

Id:

https://orcid.org/0009-0002-4607-362X

Role:

processing data

Maintenance

Maintenance:

Description:	There will also be ongoing data collection.
Frequency:

Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n      '
        |___element 'metadata'
        |     |___text '\n         '
        |     |___element 'emlEditor'
        |     |        \___attribute 'app' = 'ezEML'
        |     |        \___attribute 'release' = '2024.08.06'
        |     |___text '\n      '
        |___text '\n   '

Copyright 2024 Environmental Data Initiative. This material is based upon work supported by the National Science Foundation under grants #2223103 and #2223104. Any opinions, findings, conclusions, or recommendations expressed in the material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. Please contact us with questions, comments, or for technical assistance regarding this web site or the Environmental Data Initiative. Please read our privacy policy to know what information we collect about you and to understand your privacy rights.

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