Data Package Metadata   View Summary

The fate of a plant defense mutualism in a warming world at the University of Michigan Biological Station, Pellston, MI (2024-2026)

General Information
Data Package:
Local Identifier:edi.1821.1
Title:The fate of a plant defense mutualism in a warming world at the University of Michigan Biological Station, Pellston, MI (2024-2026)
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Mutualisms are vital to plant survival and reproduction, but climate warming has the potential to alter these interactions. One such mutualism involves foliar mites, which provide plants with defense by consuming harmful fungi. In exchange, plants offer protective structures on their leaves called domatia. Both mite and fungal communities are potentially temperature-sensitive, and warming may shift community composition, potentially altering trophic interactions between botch groups. However, the specific changes in mite and fungal community composition and their implications for plant-mite mutualism and plant performance remain unclear. To investigate the responses of both of these communities to warming, and the effects these changes will have on plants, I conducted a nested factorial field experiment with 96 P. serotina seedlings at the University of Michigan Biological Station. Plants were warmed using open top chambers, nested within which were fully factorial manipulations of the mite and fungal communities. Each group was manipulated using either pruning tar to exclude mites or Quilt fungicide to exclude fungi.

Publication Date:2024-12-11
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2024-06-01
End:
2024-08-24

People and Organizations
Contact:Dawson-Glass, Emma (University of Michigan, Graduate Student) [  email ]
Creator:Dawson-Glass, Emma (University of Michigan, Graduate Student)
Associate:Tallant, Jason M (University of Michigan Biological Station, Data Manager, Data Manager)
Associate:Habicht, Helen (University of Michigan Biological Station, Research Coordinator and Lab Manager, Data Submission Review)
Associate:Sanders, Nate (University of Michigan, Advisor)
Associate:Weber, Marjorie (University of Michigan, Advisor)

Data Entities
Data Table Name:
treatments summer 2024
Description:
A dataframe with treatment information for each experimental plot.
Data Table Name:
fungal peel 082624
Description:
Data on the abundance of fungi on a subset of 3 leaves from each plant in the experiment, based on Scotch tape peels of the leaves. Peels used a piece of tape placed on the leaf surface that was peeled off, and then the surface stained with Trypan blue. Fungal hyphae were then counted along a transect.
Data Table Name:
initial and final heights 082624
Description:
Initial and final plant height for planted cherries
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1821/1/8d5fef9c93acb3b007b6213dc85c880d
Name:treatments summer 2024
Description:A dataframe with treatment information for each experimental plot.
Number of Records:96
Number of Columns:6

Table Structure
Object Name:treatments summer 2024.csv
Size:2077 byte
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Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 uppercaseplotPlant_IDblocktemp_treattrophic_treatment
Column Name:uppercase  
plot  
Plant_ID  
block  
temp_treat  
trophic_treatment  
Definition:Plot ID in uppercase formatPlot ID in lowercase formatPlant ID (named by plant placement) within each plotThe block within which each plot was locatedWhich treatment the plot recieved (warming or control)Plant-level manipulation of the communities in the phyllosphere (manipulating the beneficial mite and fungi community)
Storage Type:string  
string  
string  
string  
string  
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Measurement Type:nominalnominalnominalnominalnominalnominal
Measurement Values Domain:
Definitiontext
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codeb
DefinitionPlant at the "bottom" of the plot (East edge of plot)
Source
Code Definition
Codel
DefinitionPlant at the "left" of the plot (South edge of plot)
Source
Code Definition
Coder
DefinitionPlant at the "right" of the plot (North edge of plot)
Source
Code Definition
Codet
DefinitionPlant at the "top" of the plot (West edge of plot)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codeblock1
DefinitionFirst block
Source
Code Definition
Codeblock2
DefinitionSecond block
Source
Code Definition
Codeblock3
DefinitionThird block
Source
Code Definition
Codeblock4
DefinitionFourth block
Source
Code Definition
Codeblock5
DefinitionFifth block
Source
Code Definition
Codeblock6
DefinitionSixth block
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC
DefinitionControl plot (wrapped with mosquito netting)
Source
Code Definition
CodeW
DefinitionWarmed plot (wrapped with greenhouse plastic, 1.7C warmer than controls)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeFM
DefinitionFungi and mites present
Source
Code Definition
CodeXF
DefinitionFungi excluded, mites present
Source
Code Definition
CodeXM
DefinitionMites excluded, fungi present
Source
Code Definition
CodeXX
DefinitionNeither mites nor fungi present
Source
Missing Value Code:            
Accuracy Report:            
Accuracy Assessment:            
Coverage:            
Methods:            

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1821/1/df3986eb234c676dbbba1249bcc35f4f
Name:fungal peel 082624
Description:Data on the abundance of fungi on a subset of 3 leaves from each plant in the experiment, based on Scotch tape peels of the leaves. Peels used a piece of tape placed on the leaf surface that was peeled off, and then the surface stained with Trypan blue. Fungal hyphae were then counted along a transect.
Number of Records:294
Number of Columns:4

Table Structure
Object Name:fungal peel 082624.csv
Size:3150 byte
Authentication:15b535899fbf5734d357756437f029e8 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 PlantLeafHyphaeNotes
Column Name:Plant  
Leaf  
Hyphae  
Notes  
Definition:Plant ID within each plotLeaf sample ID (3 samples/plant total)The number of hyphae counted along a transectAdditional notes recorded during sampling
Storage Type:string  
string  
integer  
string  
Measurement Type:nominalnominalrationominal
Measurement Values Domain:
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codea
DefinitionFirst leaf sampled
Source
Code Definition
Codeb
Definitionsecond leaf sampled
Source
Code Definition
Codec
DefinitionThird leaf sampled
Source
UnitHyphae
Typereal
Definitiontext
Missing Value Code:        
Accuracy Report:        
Accuracy Assessment:        
Coverage:        
Methods:        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/1821/1/e15f127b5bea724b09e763cf4baf7a83
Name:initial and final heights 082624
Description:Initial and final plant height for planted cherries
Number of Records:96
Number of Columns:6

Table Structure
Object Name:initial and final heights 082624.csv
Size:2656 byte
Authentication:a0e41dee75f24b9ffa060f9c3eac65bd Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 PlotPlant_IDinitial_heightend_heightNotes
Column Name:Plot  
Plant_ID  
initial_height  
planting date  
end_height  
Notes  
Definition:Plot ID informationPlant ID (named by plant placement) within each plotFirst height measurement, measured upon plantingDate at which seedling was planted (some plants died and were replaced later in the season, which is reflected in these dates)Seedling height measured at the end of the experiment on August 17, 2024Additional notes recorded during sampling
Storage Type:string  
string  
float  
string  
float  
string  
Measurement Type:nominalnominalrationominalrationominal
Measurement Values Domain:
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codeb
DefinitionPlant at the "bottom" of the plot (East edge of plot)
Source
Code Definition
Codel
DefinitionPlant at the "left" of the plot (South edge of plot)
Source
Code Definition
Coder
DefinitionPlant at the "right" of the plot (North edge of plot)
Source
Code Definition
Codet
DefinitionPlant at the "top" of the plot (West edge of plot)
Source
Unitcentimeter
Typereal
Definitiontext
Unitcentimeter
Typereal
Definitiontext
Missing Value Code:            
Accuracy Report:            
Accuracy Assessment:            
Coverage:            
Methods:            

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
(No thesaurus)University of Michigan Biologial Station, Warming, Microbiome, phyllosphere, UMBS
LTER Controlled Vocabularyfungi

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

The site was mowed prior to experimental setup. On June 1, 2024, we planted bare root Prunus serotina seedlings. Seedlings were sourced from Cold Stream Farms (Free Soil, MI) where they were wild harvested. Prior to planting, the seedlings were stored in cold storage to maintain dormancy. Seedlings were planted in groups of four, with seedlings planted in these groups spaced at least 30 cm apart. Each group was planted approximately 1.8 meters from other groups. Seedlings were watered daily to every other day during the first week following planting to facilitate establishment. Seedlings were allowed to leaf out without any heat treatment or trophic manipulation so that 1.) all seedlings had common initial mite and fungal conditions and 2.) to minimize any phenological mismatch in leaf out timing between warming treatments during establishment. On June 7 and June 13, 2024, we replaced any seedlings that did not leaf out, using the same seedling stock. Nine seedlings were replaced on June 7 and 2 seedlings were replaced on June 13. These new seedlings received the same watering schedule described above. We measured initial seedling height to the nearest half centimeter on June 13, 2024.

We initiated experimental treatments during the week of June 17th, 2024, when most seedlings had completely leafed out. To elevate temperatures, we used open top chambers. Open top chambers were constructed using PVC pipe (Charlotte Pipe and Foundry Company, Charlotte, NC, USA) (Fig. 1). For warming treatments, we used 6mil Standard Clear Greenhouse Film (Green-Tek®, Clinton, Washington, USA) wrapped around the PVC structure. For control treatments, we used the same PVC structure but used 100% Polyester Mosquito Netting (Jo-Ann Stores, Hudson, Ohio, USA). Both materials had similar PAR values. Warming treatments elevated temperatures to an average of +1.7 C compared to control treatments. We placed open top chambers over the groups of four seedlings, such that all seedlings were within the open top area of the chambers to maximize precipitation and sunlight access. Warming treatments were assigned using a random block design.

On June 19th, we began manipulations of the mite and fungal communities on the seedlings. We randomly assigned each seedling a mite-fungi treatment within their warming blocks. On June 19th, we applied pruning tar to all mature leaves on each seedling. For treatments excluding mites, tar was applied directly to domatia to block domatia colonization by mites, a common method for manipulating the mite community (Graham et al., 2022). For treatments with mites present, we applied an equivalent amount of tar elsewhere on the leaf (i.e., not on the domatia) to control for the effects of tar on the leaf. Tar treatments were reapplied to new leaves on July 2, July 22, and August 8. On June 20th, we applied fungicide treatments. For seedlings receiving a fungicide treatment, we applied a foliar spray of the broad spectrum, non-systemic contact fungicide Captan Gold Fungicide (Adama Agricultural Solutions, Ashdod, Israel) in a 1:25 fungicide to water ratio, in line with label recommendations for cherry trees. Some fungicide formulations can be harmful to mites, reducing their abundance due to adverse physiological effects. As such, we chose a fungicide that has shown little toxicity to mites. Captan fungicide (N-trichloromethylthio-4-cyclohexene-1,2-dicarboximide) is a commonly used as a fruit and ornamental tree fungicide. Captan fungicide and closely chemically related Folpet fungicide (National Center for Biotechnology Information, 2024) are commonly used in Integrated Pest Management programs due to their low toxicity to beneficial mites (Pozzebon et al., 2010; Bergeron and Schmidt-Jeffris, 2023). When applying fungicide, we removed open top chambers and sectioned off the plants being sprayed using a piece of cardboard. For seedlings where fungi were present, we applied an equivalent amount of water to account for the effects of spraying on plants. We allowed plants to dry completely before replacing the open top chambers. We reapplied fungicide treatments on July 10 and July 26, in line with label recommendations for frequency of application.

To facilitate colonization of the seedlings by mites and fungi, we supplemented seedlings with leaves from the natural community. Only July 1, we collected leaves from naturally occurring, mature P. serotina trees. We then haphazardly attached 2 wild-occurring leaves to each seedling to facilitate mite dispersal using metal wire. To facilitate fungi colonization on leaves, we filled a spray bottle with leaves, and then added 32 oz of deionized water and 5 microliters of Tween, a surfactant that disrupts surface tension and was intended to aid in removing fungi from wild-occurring leaves. This mixture was then sprayed on plants with a fungi-present trophic manipulation. For manipulations where fungi was absent, we sprayed a mixture of deionized water and Tween in the same ratio described above. We repeated this process on July 18, 2024.

To quantify the mite and fungi communities on the leaf, samples of leaves were collected between August 12 and August 21, 2024. To quantify the fungal community using genetic sequencing, a subsample of 3 leaves per plant were collected using ethanol-sterilized forceps and placed in sterile 50mL falcon tubes, which were kept on ice until being stored in a -80 C freezer. To quantify fungal hyphae abundance and the mite community, we collected an additional subset of 3 leaves per plant. Leaves were placed in plastic bags containing a moist paper towel, to prevent leaves, mites, and fungi from desiccating. Bags were kept on ice until processing. Within 24 hours of collection, the mite and fungus communities were quantified. Mites were counted by examining the abaxial leaf surface under a dissecting microscope. Fungal growth was measured using a peel method, in which Scotch tape is applied to the abaxial surface, removed, and stained with 0.5% trypan blue in lactoglycerol. Hyphal strands were then counted under a compound microscope along a 19 mm transect of the tape. (Graham et al., 2022). Under a compound microscope, we then counted the number of hyphal strands crossed a transect of the tape along the 19 mm width of the tape.

Citations:

Bergeron, P. E., & Schmidt-Jeffris, R. A. (2023). Updating integrated mite management 50 years later: Comparing laboratory pesticide susceptibility of a ‘new’ generalist predatory mite to a cornerstone specialist predator. Pest Management Science, 79(10), 3451–3458. https://doi.org/10.1002/ps.7518

Graham, C. D. K., Warneke, C. R., Weber, M., & Brudvig, L. A. (2022). The impact of habitat fragmentation on domatia-dwelling mites and a mite-plant-fungus tritrophic interaction. Landscape Ecology, 37(12), 3029–3041. https://doi.org/10.1007/s10980-022-01529-2

Pozzebon, A., Borgo, M., & Duso, C. (2010). The effects of fungicides on non-target mites can be mediated by plant pathogens. Chemosphere, 79(1), 8–17. https://doi.org/10.1016/j.chemosphere.2010.01.064

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Emma Dawson-Glass
Organization:University of Michigan
Position:Graduate Student
Email Address:
emmahdg@umich.edu
Id:https://orcid.org/0000-0002-1174-9610
Contacts:
Individual: Emma Dawson-Glass
Organization:University of Michigan
Position:Graduate Student
Email Address:
emmahdg@umich.edu
Id:https://orcid.org/0000-0002-1174-9610
Associated Parties:
Individual: Jason M Tallant
Organization:University of Michigan Biological Station
Position:Data Manager
Address:
9133 Biological Road,
Pellston, MI 49769 United States
Phone:
734-615-5005 (voice)
Email Address:
umbsdata@umich.edu
Web Address:
https://lsa.umich.edu/umbs/people/staff/jtallant.html
Id:https://orcid.org/0000-0003-4790-8772
Id:https://ror.org/02hhndj92
Role:Data Manager
Individual: Helen Habicht
Organization:University of Michigan Biological Station
Position:Research Coordinator and Lab Manager
Address:
9133 Biological Road,
Pellston, MI 49769 United States
Email Address:
habicht@umich.edu
Web Address:
https://lsa.umich.edu/umbs
Id:https://orcid.org/0000-0002-2006-9422
Id:https://ror.org/02hhndj92
Role:Data Submission Review
Individual: Nate Sanders
Organization:University of Michigan
Role:Advisor
Individual: Marjorie Weber
Organization:University of Michigan
Role:Advisor
Metadata Providers:
Individual: Emma Dawson-Glass
Email Address:
emmahdg@umich.edu
Id:https://orcid.org/0000-0002-1174-9610

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2024-06-01
End:
2024-08-24
Geographic Region:
Description:Experimental field site at the University of Michigan Biological Station
Bounding Coordinates:
Northern:  45.558907Southern:  45.558715
Western:  -84.678763Eastern:  -84.678358

Project

Parent Project Information:

Title:The fate of a plant defense mutualism in a warming world
Personnel:
Individual: Emma Dawson-Glass
Organization:University of Michigan
Email Address:
emmahdg@umich.edu
Id:https://orcid.org/0000-0002-1174-9610
Role:Graduate Student
Additional Award Information:
Funder:University of Michigan Biological Station
Title:Marian P. and David M. Gates Graduate Student Fund

Maintenance

Maintenance:
Description:

This dataset contains data for the 2024 field season. Additional sequencing data of the fungal communities are forthcoming.

Frequency:
Other Metadata

Additional Metadata

additionalMetadata
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        |     |___text '\n         '
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        |     |        \___attribute 'dateImported' = '2023-11-10'
        |     |        \___attribute 'filename' = 'UMBS_ Data Package Template.xml'
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Additional Metadata

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        |     |     |     |  \___attribute 'id' = 'Hyphae'
        |     |     |     |  \___attribute 'name' = 'Hyphae'
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Additional Metadata

additionalMetadata
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