Data Package Metadata   View Summary

Seed Production Survey, 1988-2009, Adirondack Long-Term Ecological Monitoring Program Project No. 26 by Adirondack Ecological Center of the State University of New York College of Environmental Science and Forestry, Newcomb, New York, USA

General Information
Data Package:
Local Identifier:edi.287.7
Title:Seed Production Survey, 1988-2009, Adirondack Long-Term Ecological Monitoring Program Project No. 26 by Adirondack Ecological Center of the State University of New York College of Environmental Science and Forestry, Newcomb, New York, USA
Alternate Identifier:DOI PLACE HOLDER
Abstract:

The purpose of this project is to 1) estimate number of seeds per unit area in a mature northern hardwood/mixed conifer forest stand and 2) document changes over time in selected tree and shrub seed production.

Permanent seed traps were established in 1988 in two forest types. Seed traps (13.9 L [5 gal] capacity buckets) are installed 0.5 m off the ground on two metal stakes in the center of each forested plot. Buckets are open to the tree canopy and have small (< 2cm) holes near the bottom edges for drainage.  Fifty collection buckets are placed approximately 30 m (100 feet) apart and distributed along painted grid lines in the Huntington Wildlife Forest Natural Area. Twenty-five plots are northern hardwood upland forest (dominated by sugar maple, American beech and yellow birch with some conifers) and 25 plots are in the mixed hardwood/conifer lakeshore forest type (dominated by red maple, yellow birch, red spruce and eastern hemlock). Tree and shrub seeds are collected annually during two periods: July to November (Fall) and November to July (Spring). The spring and autumn collections are based on tree species’ seed phenology.

If a bucket was tipped over due to disturbance by a bear or some other factor, it was censored from the survey for that year. Mice or other seed predators that were physically found/present in buckets also resulted in sample censoring. Animal scat or partly-consumed seeds are not censored, as these may have fallen from the tree canopy during seed predators’ normal activities.

Publication Date:2019-06-27

Time Period
Begin:
1988
End:
2009

People and Organizations
Contact:McNulty, Stacy A. (SUNY ESF AEC) [  email ]
Creator:McNulty, Stacy A. (SUNY ESF AEC)
Creator:Masters, Raymond D. (SUNY ESF)

Data Entities
Data Table Name:
Seed Prodcution Survey
Description:
Seed Prodcution Survey
Data Table Name:
Vegetation Species Codes
Description:
Vegetation Species Codes
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/287/7/300337013836a81e08f902eabbe691a9
Name:Seed Prodcution Survey
Description:Seed Prodcution Survey
Number of Records:2150
Number of Columns:31

Table Structure
Object Name:HWF_ALTEMP26_seed_data_1988_2009.csv
Size:256536 bytes
Authentication:1b466340fb1ea56228bef0dfe13a98ce Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:UNIQUE_ID  
COLLECTION_ID  
YEAR  
SEASON  
COLLECTION_START  
COLLECTION_END  
FOREST_TYPE  
PLOT  
YEBI_TOTAL  
YEBI_CATEGORY  
SUMA_TOTAL  
SUMA_FULL  
REMA_TOTAL  
REMA_FULL  
AMBE_HUSK  
AMBE_TOTAL  
AMBE_FULL  
AMBE_VERTEBRATE_EATEN  
AMBE_EMPTY  
AMBE_INSECT_DAMAGE  
RESP_TOTAL  
RESP_FULL  
EAHE_TOTAL  
SP_FI_HE_TOTAL  
NWCE_TOTAL  
BAFI_TOTAL  
PABI_TOTAL  
OTHER_TOTAL  
OTHER_SPP  
COMMENTS  
CENSOR  
Definition:Unique ID number for each bucket sampled YYYY_<94>COLLECTION_ID<94>_<94>PLOT<94>ID number for sampling. Spring collections are even numbers; Fall collections are odd numbersYear of data collectionSeason of data collectionDate that the bucket were set out empty, indicating the start date for the seed fall that would be collected in the bucket. Usually this is the COLLECTION_END date of the previous COLLECTION_IDDate that samples were collectedForest type at sample locationSite/Bucket numberTotal number of yellow birch seeds (Note description in methods)Categorical assessment of yellow birch seeds. (Note description in methods)Total number of sugar maple seedsNumber of sugar maple seeds with a cotyledon inside seed coatTotal number of red maple seedsNumber of red maple seeds with a cotyledon inside seed coatTotal number of outer burrs of American beech. Notes in Comments column for additional information on size/viabilityTotal number of American beech seedsNumber of viable beech seeds with a full-size cotyledon, not rotten, small, damaged or missingNumber of beech seeds that were predated by bird or mammal - see Comments for details. Nut was chewed or peeled openNumber of incomplete beech seeds - missing, deformed or otherwise not animal-damagedNumber of beech seeds with a drilled hole or frass inside seed coatTotal number of red spruce seedsNumber of red spruce seeds with a seed, not just a wingTotal number of eastern hemlock seedsTotal number of spruce/fir/hemlock seeds (seeds that could not be distinguished between species)Total number of northern white cedar seedsTotal number of balsam fir seedsTotal number of paper (white) birch seedsTotal number of other species seeds - see Comments for additional information4-letter code for seeds found from other speciesNotes on sample problems, unidentified seeds, seed viability, seed number estimation, or other infoY/N to indicate whether the sample was removed from the dataset even if some data were collected (e.g. mouse in sample). Missing samples (e.g. bucket tipped over) are filled with NAs
Storage Type:string  
float  
date  
string  
date  
date  
string  
float  
float  
string  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
string  
string  
string  
Measurement Type:nominalratiodateTimenominaldateTimedateTimenominalratiorationominalratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratiorationominalnominalnominal
Measurement Values Domain:
DefinitionUnique ID number for each bucket sampled YYYY_<94>COLLECTION_ID<94>_<94>PLOT<94>
Unitnumber
Typenatural
Min
Max43 
FormatYYYY
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeF
DefinitionSeason of Sampling: Fall
Source
Code Definition
CodeS
DefinitionSeason of Sampling: Spring
Source
FormatYYYYMMDD
Precision
FormatYYYYMMDD
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
DefinitionForest type: mixed conifer and deciduous
Source
Code Definition
CodeH
DefinitionForest type: hardwood (deciduous)
Source
Unitnumber
Typenatural
Min934 
Max983 
Unitnumber
Typereal
Min
Max550 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeL
DefinitionQualitative Number of Yellow Birch Seeds: Low= 1-10
Source
Code Definition
CodeM
DefinitionQualitative Number of Yellow Birch Seeds: Medium = 11-50
Source
Code Definition
CodeN
DefinitionQualitative Number of Yellow Birch Seeds: None = 0
Source
Code Definition
CodeH
DefinitionQualitative Number of Yellow Birch Seeds: High = >50
Source
Unitnumber
Typereal
Min
Max70 
Unitnumber
Typereal
Min
Max26 
Unitnumber
Typereal
Min
Max189 
Unitnumber
Typereal
Min
Max48 
Unitnumber
Typereal
Min
Max10 
Unitnumber
Typereal
Min
Max26 
Unitnumber
Typereal
Min
Max13 
Unitnumber
Typereal
Min
Max
Unitnumber
Typereal
Min
Max12 
Unitnumber
Typereal
Min
Max11 
Unitnumber
Typereal
Min
Max103 
Unitnumber
Typereal
Min
Max52 
Unitnumber
Typereal
Min
Max282 
Unitnumber
Typereal
Min
Max117 
Unitnumber
Typereal
Min
Max114 
Unitnumber
Typereal
Min
Max
Unitnumber
Typereal
Min
Max50 
Unitnumber
Typereal
Min
Max18 
Definition4-letter code for seeds found from other species
DefinitionNotes on sample problems, unidentified seeds, seed viability, seed number estimation, or other info
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeN
DefinitionCensored Data: N=data was not censored from the study
Source
Code Definition
CodeY
DefinitionCensored Data: Y=data was censored from the study, but recorded anyway
Source
Missing Value Code:
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
Accuracy Report:                                                              
Accuracy Assessment:                                                              
Coverage:                                                              
Methods:                                                              

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/287/7/5813a0736a4e80c4ce12983f5403516a
Name:Vegetation Species Codes
Description:Vegetation Species Codes
Number of Records:22
Number of Columns:5

Table Structure
Object Name:HWF_ALTEMP26_vegetation_codes.csv
Size:1118 bytes
Authentication:f7aaac12549a6638f43ca1f202431708 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:Species_Number  
Common_Name  
Scientific_Name  
SeedCode  
VegCode  
Definition:ID number used for each speciesCommon nameScientific nameFour letter code used in this seed data set to identify speciesFour letter code that may be used in additional data sets
Storage Type:float  
string  
string  
string  
string  
Measurement Type:rationominalnominalnominalnominal
Measurement Values Domain:
Unitnumber
Typenatural
Min12 
Max999 
DefinitionCommon name
DefinitionScientific name
DefinitionFour letter code used in this seed data set to identify species
DefinitionFour letter code that may be used in additional data sets
Missing Value Code:
CodeNA
Explnot known
CodeNA
Explnot known
CodeNA
Explnot known
CodeNA
Explnot known
CodeNA
Explnot known
Accuracy Report:          
Accuracy Assessment:          
Coverage:          
Methods:          

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data (Data User herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available as is. The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
(No thesaurus)Abies balsamea, Acer rubrum, Acer saccharum, Adirondack Ecological Center, Betula alleghaniensis, Betula papyrifera, Fagus grandifolia, Fraxinus americana, New York, Picea rubens, SUNY ESF, Tsuga canadensis, Viburnum alnifolium, Viburnum cassinoides
LTER Controlled Vocabularylong-term monitoring, small mammal

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

There are 25 hardwood (H, plot #944-968) and 25 mixed hardwood/conifer (M, plot #934-943 and 969-983) sites in the Natural Area, a 350+ year old unmanaged forest site located west of Catlin Lake on Huntington Wildlife Forest, SUNY ESF. Fifty 5-gallon buckets were sampled approximately every six months. A bucket was censored if it had been knocked down or tipped over more than 45 degrees at any point during that time. Biologists checked buckets occasionally throughout the sampling period but did not collect seeds until July or November.

All leaves, sticks, seeds and other materials were collected from buckets and placed in either sturdy paper bags or plastic bags. Sample bags were labeled with plot number, date, and site name. A note was made if a bucket was tipped, damaged/inoperable or missing (these samples were censored). Samples were air-dried in the bags, open and standing up, in a rodent-proof room for 2-14 days depending on moisture content of the leaf litter. For each sample, full or partial seeds (e.g., conifer seed wings) were extracted from the leaf litter after being spread on a large, white sheet of paper illuminated by a bright lamp. Seeds were sorted by species or type and counted (see Data Table below for species information). Species codes are based on common names. Seeds were compared to the seed collection in the herbarium.

For tree species other than beech and sugar maple, total seeds were counted but not viability in collections #1-36 (2006). Starting with collection #37 (2006), all conifer seeds were sorted by species and seed viability/completeness was recorded for American beech, sugar maple, red maple, red spruce and white ash (“XXXX_FULL” columns).

Conifer seeds can be difficult to count due to their fragility, similarity, and tendency to be enclosed in the cone. Starting with collection #37 (2006), all conifer seeds are identified to species. For conifer seed identification, beginning with collection #37 (2006), 1 RESP nut/embryo = 1 full seed, but 1 wing with no seed/nut = 1 empty. HEML were counted by the seed/nut only; due to the fragility of wings it was not possible to count number of empty seeds. Before collection #37 (pre-2006), attempts were made to identify conifer seeds but the numbers should be taken as a qualitative assessment. If a cone fell in the bucket in collections #1-36, the biologist could identify species (RESP, EAHE); if not, the conifer seeds were counted in the SP-FI-HE category. Avoid comparing EAHE or RESP numbers prior to 2006 due to this lack of specificity.

For yellow birch, because of seed processing issues (small, fragile, numerous), in 2003 (collections #30 and 31), seeds were not enumerated in the YEBI_total column, but were counted qualitatively as follows: High &gt;50, Medium 10-50, Low &lt;10, None = 0. Starting in collection #32 (2004), &gt;50 seeds is marked as 51 but there may have been more seeds than 51, as the biologist usually stopped counting after 50. Accordingly, some samples contain estimated YEBI seeds; this is noted in the comments by “est.” or “over 50 YEBI.”

People and Organizations

Creators:
Individual: Stacy A. McNulty
Organization:SUNY ESF AEC
Email Address:
smcnulty@esf.edu
Individual: Raymond D. Masters
Organization:SUNY ESF
Contacts:
Individual: Stacy A. McNulty
Organization:SUNY ESF AEC
Email Address:
smcnulty@esf.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1988
End:
2009
Geographic Region:
Description:Huntington Wildlife Forest (HWF) is SUNY ESF's Newcomb Campus, a 15,000 acre field station in the town of Newcomb, Essex County, New York, USA. The study area includes roads on HWF and a portion of State Route 28N
Bounding Coordinates:
Northern:  44.061792Southern:  43.971273
Western:  -74.307322Eastern:  -74.178244

Project

Parent Project Information:

Title:No project title to report
Personnel:
Individual: Stacy A. McNulty
Organization:SUNY ESF AEC
Email Address:
smcnulty@esf.edu
Role:Principal Investigator
Funding: No funding to report
Related Project:
Title:No project title to report
Personnel:
Individual: Raymond D. Masters
Organization:SUNY ESF
Role:Principal Investigator
Funding: No funding to report

Maintenance

Maintenance:
Description:ongoing
Frequency:

Additional Info

Additional Information:
 

In this dataset, SeedCode is used. Number, SeedCode and VegCode refer to related coding schemes used in other projects at SUNY ESF’s Huntington Wildlife Forest and Adirondack Ecological Center. See HWF_ALTEMP26_vegetation_codes.csv for details. A map of the general survey area is also included, see HWF_ALTEMP26_map.pdf

Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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