Data Package Metadata   View Summary

Mercury Imports and Exports of Four Tidal Wetlands in the Sacramento Valley, California

General Information
Data Package:
Local Identifier:edi.322.1
Title:Mercury Imports and Exports of Four Tidal Wetlands in the Sacramento Valley, California
Alternate Identifier:DOI PLACE HOLDER
Abstract:

The California Department of Water Resources (DWR) measured import and export loads of methylmercury (MeHg) and total mercury (THg) at four tidal wetlands in the Sacramento Valley of California to comply with the Central Valley Regional Water Quality Control Board’s Delta Methylmercury Total Maximum Daily Load (TMDL). In addition to mercury, DWR collected organic carbon, total suspended sediment, chlorophyll-a, temperature, dissolved oxygen, specific conductance, turbidity, total chlorophyll, velocity, level, and flow data. To do this, three sets of data were collected: 1) velocity, level, and flow data were collected continuously using an Acoustic Doppler Current Profiler, 2) continuous temperature, specific conductance, salinity, dissolved oxygen, turbidity, and total chlorophyll were collected using a water quality sond, and 3) THg, MeHg, organic carbon, total suspended sediment, and chlorophyll-a were collected via grab samples either by sampling pole or flow-weighted composites with an autosampler.

Publication Date:2020-06-15

Time Period
Begin:
2014-05-21
End:
2019-08-05

People and Organizations
Contact:Lee, Petra M (California Department of Water Resources (CDWR)) [  email ]
Creator:Lee, Petra M (California Department of Water Resources (CDWR))
Creator:Manning, Julianna L (CDWR)
Associate:Bosworth, David H (CDWR, Field Crew, Data Manager, Reviewer)
Associate:Miller, Sonia A (CDWR, Field Crew, Reviewer)
Associate:Jeu, Elaine S (CDWR, Field Crew)
Associate:Lindsey, Otome M (CDWR, Field Crew)
Associate:DiGiorgio, Carol L (CDWR, Field Crew, Program Manager, Reviewer)
Associate:Huston, David W (CDWR, Data Manager)
Associate:Evanson, Nathan T (CDWR, Data Manager, Field Crew.)
Associate:Mulligan, Matt E (CDWR, Data Manager, Field Crew.)

Data Entities
Data Table Name:
Sampling stations
Description:
Sampling Locations at Four Tidal Wetlands in the Sacramento Valley
Data Table Name:
Grab samples
Description:
Grab Sample Mercury, Organic Carbon, Total Suspended Solids, and Chlorophyll Data at Four Tidal Wetlands in the Sacramento Valley
Data Table Name:
Sonde measurements
Description:
Continuous Water Quality Data at Four Tidal Wetlands in the Sacramento Valley
Data Table Name:
Flow measurements
Description:
Continuous Flow, Velocity, and Level Water Data at Four Tidal Wetlands in the Sacramento Valley
Other Name:
Final report
Description:
This is the final compliance report for this data with some basic analyses. We will be submitting a manuscript to a peer-reviewed journal and will update EDI with the information.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/322/1/4728a89a77164ccb8449c51304a785db
Name:Sampling stations
Description:Sampling Locations at Four Tidal Wetlands in the Sacramento Valley
Number of Records:5
Number of Columns:4

Table Structure
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Table Column Descriptions
 
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Station_Short_Name  
Latitude_WGS84  
Longitude_WGS84  
Definition:Long descriptive station nameAbbreviated station nameStation Location Latitude WGS84Station Location Longitude WGS84
Storage Type:string  
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Measurement Type:nominalnominalratioratio
Measurement Values Domain:
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DefinitionAbbreviated station name
Unitdegree
Typereal
Min38.179651 
Max38.44884167 
Unitdegree
Typereal
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Max-121.4177778 
Missing Value Code:        
Accuracy Report:        
Accuracy Assessment:        
Coverage:        
Methods:        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/322/1/defab59230ce935e45bfa9a823cde978
Name:Grab samples
Description:Grab Sample Mercury, Organic Carbon, Total Suspended Solids, and Chlorophyll Data at Four Tidal Wetlands in the Sacramento Valley
Number of Records:2643
Number of Columns:14

Table Structure
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Table Column Descriptions
 
Column Name:Station_Short_Name  
Sample_Code  
Collection_Date_ISO  
Analyte  
Result  
Rpt_Limit  
MDL  
Units  
Method  
Depth  
Matrix  
Purpose  
Parent_Sample  
Description  
Definition:Tidal wetland sampling station short nameOur sampling number for all analyte samples collected at the same time and location.Date and time in ISO 8601 Pacific Standard Time. No daylight time observed.Sampling analyte in waterNumerical concentration of the analyte measured. 0 means the value is either below the reporting limit and/or method detection limit.Reporting Limit of the sampling analyte, in same units as sample.Method Detection Limit of the sampling analyte, in the same units as the sample.Concentration units of result and reporting limit.Analytical method used to measure analyte in water. United States Environmental Protection Agency (USEPA), USEPA Modified Moss Landing Marine Laboratory, and Standard Methods.Sample depth in the water column from the surface.All samples are natural (environmental) water samples.This is the type of sample that was collected and reported, whether a simple grab sample, a composited samples, or a field duplicate or lab replicated.Sample number of parent sample for duplicates and replicates. 0 indicates no duplicate or replicate was taken.Sample description. The Ebb 1& 2, Flood 1 & 2 samples were composited using samples collected hourly during a 25-hour sampling event. Hourly samples were a basic one-time grab samples that were often collected with a field duplicate. Hourly samples
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Measurement Values Domain:
DefinitionTidal wetland sampling station short name
DefinitionOur sampling number for all analyte samples collected at the same time and location.
FormatYYYY-MM-DDThh:mm:ss
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeDissolved Mercury
DefinitionDissolved Mercury
Source
Code Definition
CodeTotal Mercury
DefinitionTotal Mercury
Source
Code Definition
CodeTotal Organic Carbon
DefinitionTotal Organic Carbon
Source
Code Definition
CodeDissolved Organic Carbon
DefinitionDissolved Organic Carbon
Source
Code Definition
CodeTotal Suspended Solids
DefinitionTotal Suspended Solids
Source
Code Definition
CodeTotal Methylmercury
DefinitionTotal Methylmercury
Source
Code Definition
CodeDissolved Methylmercury
DefinitionDissolved Methylmercury
Source
Code Definition
CodeChlorophyll a
DefinitionChlorophyll a
Source
Code Definition
CodePheophytin a
DefinitionPheophytin a
Source
Unitnumber
Typereal
Min
Max296 
Unitnumber
Typereal
Min0.03 
Max
Unitnumber
Typereal
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Max0.011 
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Enumerated Domain 
Code Definition
Codeng/L
DefinitionnanogramsPerLiter
Source
Code Definition
Codemg/L as C
DefinitionmilligramsPerLiter as Carbon
Source
Code Definition
Codemg/L
DefinitionmilligramsPerLiter
Source
Code Definition
Codeµg/L
DefinitionmicrogramsPerLiter
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeEPA 1631 E (D) [1]
DefinitionPLACEHOLDER
Source
Code Definition
CodeEPA 1631 E (T) [1]
DefinitionPLACEHOLDER
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Code Definition
CodeEPA 415.1 (T) Ox [PS-3]
DefinitionPLACEHOLDER
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Code Definition
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DefinitionPLACEHOLDER
Source
Code Definition
CodeEPA 160.2 [1]
DefinitionPLACEHOLDER
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Code Definition
CodeEPA 1630 MLML Modified (T) [1]
DefinitionPLACEHOLDER
Source
Code Definition
CodeEPA 1630 MLML Modified (D) [1]
DefinitionPLACEHOLDER
Source
Code Definition
CodeStd Method 10200 H [1]
DefinitionPLACEHOLDER
Source
Code Definition
CodeEPA 415.3 (D) [PS-3]
DefinitionPLACEHOLDER
Source
Code Definition
CodeEPA 415.3 (T) [PS-3]
DefinitionPLACEHOLDER
Source
Unitmeter
Typereal
Min
Max
DefinitionAll samples are natural (environmental) water samples.
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeComposited Sample
DefinitionComposite sample of hourly grab samples based on flow-weight
Source
Code Definition
CodeNormal Sample
DefinitionGrab sample
Source
Code Definition
CodeDuplicate Sample
DefinitionA field duplicate in which two samples were taken
Source
Code Definition
CodeReplicate Sample
DefinitionLab replicate in which the lab ran a sample twice
Source
Code Definition
CodeReplicate, Specific Analyte(s)
DefinitionLab replicate in which the lab ran a sample twice for a specific analyte or analytes
Source
DefinitionSample number of parent sample for duplicates and replicates. 0 indicates no duplicate or replicate was taken.
DefinitionSample description. The Ebb 1& 2, Flood 1 & 2 samples were composited using samples collected hourly during a 25-hour sampling event. Hourly samples were a basic one-time grab samples that were often collected with a field duplicate. Hourly samples
Missing Value Code:            
CodeNA
ExplA method detection limit was not reported. Empty value code.
           
CodeNA
ExplMissing value
Accuracy Report:                            
Accuracy Assessment:                            
Coverage:                            
Methods:                            

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/322/1/475e089d40817cb80f99b8c9751821ac
Name:Sonde measurements
Description:Continuous Water Quality Data at Four Tidal Wetlands in the Sacramento Valley
Number of Records:122725
Number of Columns:18

Table Structure
Object Name:TidalWetland_sonde_data_CDWR.csv
Size:10640720 bytes
Authentication:e426bdc427f5609547a6f04e6ffa525c Calculated By MD5
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Table Column Descriptions
 
Column Name:Station_Short_Name  
Date_Time_ISO  
Water_Temp_C  
Water_Temp_Qual_Code  
Depth_m  
Depth_Qual_Code  
Salinity_ppt  
Salinity_Qual_Code  
Turbidity_NTU  
Turbidity_Qual_Code  
Specific_Cond_uSpercm  
Specific_Cond_Qual_Code  
DO_Perc_Sat  
DO_Perc_Sat_Qual_Code  
DO_mgperL  
DO_mgperL_Qual_Code  
Chlorophyll_RFU  
Chlorophyll_Qual_Code  
Definition:Tidal wetland sampling station short nameDate and time in ISO 8601 Pacific Standard Time. No daylight time observed.Water temperatureWater temperature data quality codeDepth of sonde under waterWater depth quality codeWater salinity (ppt)Water salinity quality codeWater turbidity (NTU i.e. nephelometric turbidity units)Water turbidity quality codeWater specific conductanceWater specific conductance quality codePercent saturation of dissolved oxygen in waterDissolved oxygen saturation quality codeDissolved oxygen concentration in waterDissolved oxygen concentration quality codeTotal chlorophyll (RFU, i.e. relative fluorescence units)Total chlorophyll quality code
Storage Type:string  
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float  
string  
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string  
float  
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float  
string  
float  
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float  
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float  
string  
Measurement Type:nominaldateTimerationominalrationominalrationominalrationominalrationominalrationominalrationominalrationominal
Measurement Values Domain:
DefinitionTidal wetland sampling station short name
FormatYYYY-MM-DDThh:mm:ss
Precision
Unitcelsius
Typereal
Min2.8 
Max33.1 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionGood quality, unedited data
Source
Unitmeter
Typereal
Min-0.12 
Max4.28 
Allowed Values and Definitions
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Source
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DefinitionGood quality, unedited data
Source
Code Definition
Code170
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Source
Code Definition
Code40
DefinitionFair measurement
Source
Unitdimensionless
Typereal
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Max1100.4 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionGood quality, unedited data
Source
Code Definition
Code170
DefinitionUnreliable data
Source
Code Definition
Code40
DefinitionFair measurement
Source
UnitmicroSiemensPerCentimeter
Typenatural
Min24 
Max1420 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionGood quality, unedited data
Source
Code Definition
Code170
DefinitionUnreliable data
Source
Code Definition
Code40
DefinitionFair measurement
Source
UnitpercentSaturation
Typereal
Min1.2 
Max144.1 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code40
DefinitionFair measurement
Source
Code Definition
Code1
DefinitionGood quality, unedited data
Source
UnitmilligramsPerLiter
Typereal
Min0.12 
Max13.39 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code40
DefinitionFair measurement
Source
Code Definition
Code1
DefinitionGood quality, unedited data
Source
Unitdimensionless
Typereal
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Max86.83 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionGood quality, unedited data
Source
Code Definition
Code170
DefinitionUnreliable data
Source
Missing Value Code:            
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
Accuracy Report:                                    
Accuracy Assessment:                                    
Coverage:                                    
Methods:                                    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/322/1/86bd0f7f2b8cf7346b1c861b7a98fe1b
Name:Flow measurements
Description:Continuous Flow, Velocity, and Level Water Data at Four Tidal Wetlands in the Sacramento Valley
Number of Records:205887
Number of Columns:8

Table Structure
Object Name:Combined_Q_CDWR.csv
Size:11089893 bytes
Authentication:ead8cb0b63526f2a529b015c9b601e41 Calculated By MD5
Text Format:
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Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:Station_Short_Name  
Date_Time_ISO  
Flow_CFS  
Flow_Qual_Code  
Velocity_ftpersec  
Velocity_Qual_Code  
Water_Level_ft  
Water_Level_Qual_Code  
Definition:Tidal wetland sampling station short nameDate and time in ISO 8601 Pacific Standard Time. No daylight time observed.Water flowFlow data quality codeWater velocityVelocity data quality codeWater levelWater level data quality code
Storage Type:string  
date  
float  
string  
float  
string  
float  
string  
Measurement Type:nominaldateTimerationominalrationominalrationominal
Measurement Values Domain:
DefinitionTidal wetland sampling station short name
FormatYYYY-MM-DDThh:mm:ss
Precision
UnitcubicFeetPerSecond
Typereal
Min-1520 
Max892 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionGood quality, uneditied data
Source
Code Definition
Code70
DefinitionEstimated data
Source
Code Definition
Code2
DefinitionGood quality, edited data
Source
UnitfeetPerSecond
Typereal
Min-7 
Max2.14 
Allowed Values and Definitions
Enumerated Domain 
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Code1
DefinitionGood quality, uneditied data
Source
Code Definition
Code70
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Source
Code Definition
Code2
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Unitfoot
Typereal
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Max16.3 
Allowed Values and Definitions
Enumerated Domain 
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Code1
DefinitionGood quality, uneditied data
Source
Code Definition
Code70
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Code Definition
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ExplMissing value
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ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
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CodeNA
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Accuracy Report:                
Accuracy Assessment:                
Coverage:                
Methods:                

Non-Categorized Data Resource

Name:Final report
Entity Type:unknown
Description:This is the final compliance report for this data with some basic analyses. We will be submitting a manuscript to a peer-reviewed journal and will update EDI with the information.
Physical Structure Description:
Object Name:Final_Report.pdf
Size:8828221 bytes
Authentication:0b8ae0896f20ad1c88358e13da040086 Calculated By MD5
Externally Defined Format:
Format Name:unknown
Data:https://pasta-s.lternet.edu/package/data/eml/edi/322/1/0973952cc517bf5f9899a57bf27df6ce

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data (\"Data User\" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available \"as is.\" The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularywater quality, flux, concentration, marshes, mass balance
(No thesaurus)mercury, methylmercury, Sacramento-San Joaquin Delta, tidal wetlands, Yolo Bypass, Suisun Marsh

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

1. Continuous 15-minute flow data collection methods: To measure the level and velocity used to calculate flows, we used a SonTek IQ Plus Acoustic Doppler Current Profiler (ADCP) that we placed on the bottom of the channel opening(s) of each wetland. The ADCPs use five up-looking beams to calculate level and velocity and data was reported at 15-minute intervals. We calculated flow using the methods of Levesque and Oberg (2012) and used cubic spline interpolation to estimate missing flow data up to six hours; gaps larger than six hours could not be estimated.

2. Continuous 15-minute water quality sonde data collection methods: Basic water quality parameters were collected every 15-minutes using YSI EXO 2 water quality sondes. The sondes were mounted within the opening to adjacent water body of each wetland, except Blacklock, to collect temperature, specific conductance, turbidity, dissolved oxygen, and total chlorophyll data. We followed the YSI EXO User Manual collection and calibration methods for the first three wetlands. For the last wetland, Westervelt, we followed a modification of the Wagner Method (Wagner, Boulger Jr., Oblinger, & Smith, 2006) for verifying sonde data.

3. Discrete water quality grab sample data collection methods: Grab samples were collected weekly by sampling pole or by wading out near the sonde with a clean bottle. Samples were analyzed for chlorophyll a and total suspended solids. We also recorded temperature, specific conductance, dissolved oxygen, and turbidity at the time of collection with YSI ProPlus handheld meters and Hach 2100Q Turbidimeters at the first three wetlands. For the last wetland, Westervelt, we used YSI EXO 1 water quality sondes to record field measurements. This data was combined with continuous sonde data to estimate continuous data for chlorophyll a and total suspended solids.

4. 25-hour autosampler water quality event data collection methods: We used ISCO 6712 autosamplers deployed at the opening of each wetland to collect hourly water quality data over a 25-hour period. Each one was outfitted with 1.8 L glass bottles, PTFE lined tubing, and a CPVC coated weighted strainer. The intake was either attached to a stake or a float and weight set up in the mouth of each wetland, depending on the water depth, to keep the intake submerged but at least a foot above the sediment. We used the flow data to calculate and composite four flow-weighted tides, two floods and two ebbs per tidal cycle. The composited water samples were analyzed for unfiltered and filtered total mercury, unfiltered and filtered methylmercury, total and dissolved organic carbon, and total suspended solids.

5. Mercury sample collection methods: All mercury samples were collected using the EPA’s “clean hands, dirty hands” method. Glass sample bottles were purchased from suppliers that acid clean and double bag each bottle according to the EPA’s “Specifications and Guidance for Contaminant-Free Sample Containers” publication. All other equipment that came in contact with mercury samples was acid cleaned by DWR staff and stored in clean resealable plastic bags before use.

6. Methods references:

Levesque, V. A., & Oberg, K. A. (2012). Computing discharge using the index velocity method. Techniques and Methods 3-A23, U.S. Geological Survey, Reston, Virginia.

Wagner, R. J., Boulger Jr., R. W., Oblinger, C. J., & Smith, B. A. (2006). Guidelines and standard procedures for continuous water-quality monitors – Station operation, record computation, and data reporting. Techniques and Methods 1-D3, U.S. Geological Survey, Reston, Virginia.

People and Organizations

Creators:
Individual: Petra M Lee
Organization:California Department of Water Resources (CDWR)
Email Address:
Petra.Lee@Water.ca.gov
Id:https://orcid.org/0000-0002-4207-2884
Individual: Julianna L Manning
Organization:CDWR
Email Address:
Julianna.Manning@water.ca.gov
Id:https://orcid.org/0000-0002-5661-0129
Contacts:
Individual: Petra M Lee
Organization:California Department of Water Resources (CDWR)
Email Address:
Petra.Lee@Water.ca.gov
Id:https://orcid.org/0000-0002-4207-2884
Associated Parties:
Individual: David H Bosworth
Organization:CDWR
Email Address:
David.Bosworth@water.ca.gov
Id:https://orcid.org/0000-0003-0740-3390
Role:Field Crew, Data Manager, Reviewer
Individual: Sonia A Miller
Organization:CDWR
Email Address:
Sonia.Miller@water.ca.gov
Role:Field Crew, Reviewer
Individual: Elaine S Jeu
Organization:CDWR
Email Address:
Elaine.Jeu@water.ca.gov
Role:Field Crew
Individual: Otome M Lindsey
Organization:CDWR
Email Address:
Otome.Lindsey@water.ca.gov
Role:Field Crew
Individual: Carol L DiGiorgio
Organization:CDWR
Email Address:
Carol.DiGiorgio@water.ca.gov
Id:https://orcid.org/0000-0001-7213-4348
Role:Field Crew, Program Manager, Reviewer
Individual: David W Huston
Organization:CDWR
Email Address:
Dave.Huston@water.ca.gov
Role:Data Manager
Individual: Nathan T Evanson
Organization:CDWR
Email Address:
Nathan.Evenson@water.ca.gov
Role:Data Manager, Field Crew.
Individual: Matt E Mulligan
Organization:CDWR
Email Address:
Matthew.Mulligan@water.ca.gov
Role:Data Manager, Field Crew.

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2014-05-21
End:
2019-08-05
Geographic Region:
Description:Tidal wetlands in the Sacramento-San Joaquin Delta, Yolo Bypass, and Suisun Marsh, California USA, WGS84
Bounding Coordinates:
Northern:  38.4720842Southern:  38.1768542
Western:  -121.914378Eastern:  -121.408991

Project

Maintenance

Maintenance:
Description:Complete
Frequency:
Other Metadata

Additional Metadata

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