Data Package Metadata   View Summary

Fine root morphology in plots dominated by trees that associate with arbuscular mycorrhizal or ectomycorrhizal fungi in the N fertilized and reference watershed at the Bear Brook Watershed in Maine, USA during the final year of N fertilization (2016) and during the year after N fertilization ceased (2017).

General Information
Data Package:
Local Identifier:edi.372.1
Title:Fine root morphology in plots dominated by trees that associate with arbuscular mycorrhizal or ectomycorrhizal fungi in the N fertilized and reference watershed at the Bear Brook Watershed in Maine, USA during the final year of N fertilization (2016) and during the year after N fertilization ceased (2017).
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Our objective was to detect possible differences in N fertilization responses of fine root morphology in plots dominated by trees that associate with arbuscular mycorrhizal fungi (AM) or ectomycorrhizal fungi (ECM). To do this, we sampled fine roots in a plot network of 6 AM and 6 ECM dominated (>65% diameter at breast height) 10 x 10 m plots in the lower elevation hardwood zone of both the reference and N fertilized watersheds (N=24 plots) at Bear Brook Watershed, in Maine USA during final year of N fertilization at Bear Brook in 2016 and during the year after N fertilization ceased in 2017.

Publication Date:2021-07-22

Time Period
Begin:
2016-05-01
End:
2017-09-01

People and Organizations
Contact:Carrara, Joseph E (West Virginia University) [  email ]
Creator:Carrara, Joseph E (West Virginia University)
Creator:Fernandez, Ivan J (University of Maine, School of Forest Resources and Climate Change Institute)
Creator:Brzostek, Edward R (West Virginia University)

Data Entities
Data Table Name:
Bear Brook soil enzyme activities
Description:
Fine root morphology in AM and ECM dominated plots in the N fertilized and reference Watershed at Bear Brook Watershed in Maine USA as measured in 2016 and 2017.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/372/1/453e739c16e7226100a3b3b66c190d53
Name:Bear Brook soil enzyme activities
Description:Fine root morphology in AM and ECM dominated plots in the N fertilized and reference Watershed at Bear Brook Watershed in Maine USA as measured in 2016 and 2017.
Number of Records:48
Number of Columns:10

Table Structure
Object Name:BBWM20162017rootsopen.csv
Size:3758 bytes
Authentication:ee51f852c091bacdb0e3d11128c86884 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:Year  
Watershed  
Mycorrhizae  
Treatment  
Plot  
PercentColonization  
FineRootBiomass  
SpecificRootLength  
Diameter  
Forks  
Definition:Year the soil samples were takenName of the watershed the plot is inN Fertilized or Reference watershedDominant tree mycorrhizal type within each plotPlot numberPercent of root surface area colonized by arbuscular mycorrhizal fungi (AM plots) or percent of root tips colonized by ectomycorrhizal fungi (ECM plots)Grams of fine roots per meter squaredLength of fine roots per gramAverage diameter of fine rootsNumber of forks per gram of roots
Storage Type:date  
string  
string  
string  
string  
float  
float  
float  
float  
float  
Measurement Type:dateTimenominalnominalnominalnominalratioratioratioratioratio
Measurement Values Domain:
FormatYYYY
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeEastBear
DefinitionEast Bear
Source
Code Definition
CodeWestBear
DefinitionWest Bear
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAM
DefinitionAM
Source
Code Definition
CodeECM
DefinitionECM
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeN
DefinitionN Fertilized
Source
Code Definition
CodeReference
DefinitionReference
Source
DefinitionPlot number
Unitpercent
Typereal
Min19.23076923 
Max76.78571429 
UnitgramPerMeterSquared
Typereal
Min179.9633287 
Max494.3582836 
UnitcentimeterPerGram
Typereal
Min447.4957062 
Max1173.979358 
Unitmillimeter
Typereal
Min0.5045 
Max1.7395 
UnitnumberPerGram
Typereal
Min952 
Max4562.537723 
Missing Value Code:                    
Accuracy Report:                    
Accuracy Assessment:                    
Coverage:                    
Methods:                    

Data Package Usage Rights

This data package is released to the "public domain" under Creative Commons CC0 1.0 "No Rights Reserved" (see: https://creativecommons.org/publicdomain/zero/1.0/). It is considered professional etiquette to provide attribution of the original work if this data package is shared in whole or by individual components. A generic citation is provided for this data package on the website https://portal.edirepository.org (herein "website") in the summary metadata page. Communication (and collaboration) with the creators of this data package is recommended to prevent duplicate research or publication. This data package (and its components) is made available "as is" and with no warranty of accuracy or fitness for use. The creators of this data package and the website shall not be liable for any damages resulting from misinterpretation or misuse of the data package or its components. Periodic updates of this data package may be available from the website. Thank you.

Keywords

By Thesaurus:
(No thesaurus)nitrogen fertilization, fine root morphology, arbuscular mycorrhizal fungi, ectomycorrhizal fungi, Bear Brook Watershed Maine, nitrogen recovery

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

In order to detect possible differences in N fertilization response between mycorrhizal types, we established a plot network of 6 AM and 6 ECM dominated (>65% diameter at breast height; Table S1) 10 x 10 m plots in the lower elevation hardwood zone of both the reference and fertilized watershed at Bear Brook Watershed, Maine in May 2016 (N=24 plots). Tree species were similar between watersheds with AM trees represented by red maple (Acer rubrum) and sugar maple (Acer saccharum) and ECM trees represented by American beech (Fagus grandifolia), grey birch (Betula populifolia), and yellow birch (Betula alleghaniensis).

To capture fine root biomass and morphology variability across the growing season, we sampled soils in each plot in May, July, and September of 2016 and in June, July, and September of 2017. We sampled four 5 cm diameter bulk mineral soil cores to a depth of 15 cm beneath the organic horizon layer and homogenized these by plot. All samples were kept on ice and transported to West Virginia University for further processing within 48-72 h. Upon return to the lab, we separated and dried all fine roots from bulk mineral soils.

To examine the extent to which N fertilization and recovery drove plant investment in fungal symbiosis belowground, mineral soil roots from the peak growing season sampling date (July) in 2016 and 2017 were examined for mycorrhizal colonization. To determine ECM colonization, fine roots from ECM plots were spread out on a petri dish and root tips were examined under a stereoscopic microscope. Percent ECM colonization was calculated as the percent of total root tips that exhibited visible ECM structures including hyphal mantle and emanating mycelium (Bzdyk et al. 2019).

AM structures are not as clearly visible because they are smaller and can occur within the root. As such, AM roots were first cleared of pigment and stained to determine the presence of AM arbuscules and hyphae. Briefly, roots were cleared of pigment by soaking in 10% potassium hydroxide for 48-96 hours and excess pigment was leached from roots by incubating them in 85% ethanol for 24-48 hours. To remove any remaining pigment, roots were covered in an ammonia/hydrogen peroxide solution for 15 minutes. Finally, roots were acidified for staining in 5% hydrochloric acid and stained for 5-20 minutes in 0.06% trypan blue (Comas et al. 2014). Percent colonization of AM fungi was determined using the grid-intersect method wherein roots were spread across a 1 x 1 cm gridded petri dish and examined with a stereoscopic microscope at each intersect for the presence of arbuscules or hyphae (Giovannetti and Mosse 1980; McGonigle et al. 1990). Percent colonization was calculated as the percent of intersects that were colonized by AM structures.

Description:

Root architecture: To examine differential responses of AM and ECM fine root structure to N fertilization and recovery, dried roots from the mineral soils of the July 2016 and 20176 sampling dates were suspended in water and scanned with a LA2400 desktop scanner. These digital images were analyzed to determine root length, average diameter, and number of forks of each sample using WinRhizo software (WinRhizo, Regent Instruments Inc). We standardized these data by expressing all measurements per g of dry root biomass.

Description:

References: Bzdyk RM, Olchowik J, Studnicki M, et al (2019) Ectomycorrhizal colonisation in declining oak stands on the Krotoszyn Plateau, Poland. Forests. doi: 10.3390/f10010030

Comas LH, Callahan HS, Midford PE (2014) Patterns in root traits of woody species hosting arbuscular and ectomycorrhizas: Implications for the evolution of belowground strategies. Ecol Evol 4:2979–2990. doi: 10.1002/ece3.1147

Giovannetti M, Mosse B (1980) An evaluation of techniques for measuring vesicular arbuscular mycorrhizal infection in roots. New Phytol 84:489–500. doi: 10.1111/j.1469-8137.1980.tb04556.x

McGonigle TP, Miller MH, Evans DG, et al (1990) A New Method which Gives an Objective Measure of Colonization of Roots by Vesicular- Arbuscular Mycorrhizal Fungi. New Phytol 115:495–501. doi: 10.1111/j.1469-8137.1990.tb00476.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Creators:
Individual: Joseph E Carrara
Organization:West Virginia University
Email Address:
jocarrara@mix.wvu.edu
Id:https://orcid.org/0000-0003-0597-1175
Individual: Ivan J Fernandez
Organization:University of Maine, School of Forest Resources and Climate Change Institute
Email Address:
ivanjf@maine.edu
Individual: Edward R Brzostek
Organization:West Virginia University
Email Address:
erbrzostek@mix.wvu.edu
Contacts:
Individual: Joseph E Carrara
Organization:West Virginia University
Email Address:
jocarrara@mix.wvu.edu
Id:https://orcid.org/0000-0003-0597-1175

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2016-05-01
End:
2017-09-01
Sampling Site: 
Description:Bear Brook Watershed in Maine
Site Coordinates:
Longitude (degree): -68.106971Latitude (degree): 44.861781

Project

Parent Project Information:

Title:Long-Term Research in Environmental Biology (LTREB) program
Personnel:
Individual: Ivan J Fernandez
Organization:University of Maine, School of Forest Resources and Climate Change Institute
Email Address:
ivanjf@maine.edu
Role:Principal Investigator
Funding: NSF DEB-1119709
Related Project:
Title:NSF Graduate Research Fellowship to Joseph Carrara
Personnel:
Individual: Ivan J Fernandez
Organization:University of Maine, School of Forest Resources and Climate Change Institute
Email Address:
ivanjf@maine.edu
Role:Principal Investigator
Funding: NSF DGE-1102

Maintenance

Maintenance:
Description:completed
Frequency:
Other Metadata

Additional Metadata

additionalMetadata
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        |___element 'metadata'
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        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'centimeterPerGram'
        |     |     |     |  \___attribute 'multiplierToSI' = '100'
        |     |     |     |  \___attribute 'name' = 'centimeterPerGram'
        |     |     |     |  \___attribute 'parentSI' = 'meterPerGram'
        |     |     |     |  \___attribute 'unitType' = 'massSpecificLength'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text '1/100 of a meterPerGram'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

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