Data Package Metadata   View Summary

Soil Organic Matter Mechanisms of Stabilization (SOMMOS) - enhanced soil characterization data from 40 National Ecological Observatory Network (NEON) sites

General Information
Data Package:
Local Identifier:edi.499.6
Title:Soil Organic Matter Mechanisms of Stabilization (SOMMOS) - enhanced soil characterization data from 40 National Ecological Observatory Network (NEON) sites
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Soil organic matter (SOM) is a critical linkage among many ecosystem services that sustain our society and life on Earth. It is the primary energy source for microbes and the principal storehouse of water necessary for plant growth. SOM also stores nutrients for plants and sorbs pollutants that otherwise could contaminate food and water supplies. Soils also help regulate climate by storing carbon that would otherwise be released to the atmosphere and contribute to climate change. The SOMMOS project investigated processes in the soil that protect SOM from being decomposed by microbes, processes that increase its sensitivity to environmental changes, and how changes in climate and land management influence the amount and stability of SOM. The project, which was a collaboration between scientists from the National Ecological Observatory Network (NEON), University of Colorado, University of Michigan, Oregon State University, Virginia Polytechnic Institute and State University, and the USDA-Forest Service, took advantage of soil samples collected across NEON, a major NSF investment in environmental monitoring that covers the entire United States. This continental-scale soil sample set was analyzed for a wide array of physical and chemical properties, well beyond those typically measured on such a large-scale sample set, including radiocarbon, extractable metals, organic matter chemistry by pyrolysis-GCMS, liquid extract fluorescence spectroscopy, and more. In addition to this dataset, archived samples are available from the project for sharing with interested researchers.

Publication Date:2021-12-03
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2014
End:
2019

People and Organizations
Contact:Nave, Lucas E (University of Michigan Biological Station, Associate Research Scientist) [  email ]
Contact:Heckman, Katherine A (USDA - Forest Service Northern Research Station, Research Scientist) [  email ]
Creator:Nave, Lucas E (University of Michigan Biological Station, Associate Research Scientist)
Creator:Heckman, Katherine A (USDA - Forest Service Northern Research Station, Research Scientist)
Creator:Bowman, Maggie (Pacific Northwest National Laboratory, Post Doctorate RA B)
Creator:Gallo, Adrian C (Oregon State University, Graduate Student (PhD))
Creator:Hatten, Jeff (Oregon State University, Associate Professor)
Creator:Matosziuk, Lauren (Oregon State University, Research Associate)
Creator:Possinger, Angela (Virginia Tech, Postdoctorial Associate)
Creator:SanClements, Michael (National Ecological Observatory Network (NEON), Lead Research Scientist)
Creator:Strahm, Brian (Virginia Tech, Professor)
Creator:Weiglein, Tyler L (Virginia Tech, Graduate Student (PhD))
Creator:Swanston, Chris (USDA - Forest Service Northern Research Station, Research Ecologist and Program Leader)
Associate:Tallant, Jason M (University of Michigan Biological Station, Data Manager, Metadata Compiler)

Data Entities
Data Table Name:
SOMMOS_site_list
Description:
List of sites that have soil samples characterized and analyzed. Climate data added.
Data Table Name:
SOMMOS_horizon_data
Description:
Soil horizon characterization by site.
Data Table Name:
SOMMOS_sample_composite_data
Description:
Characterization of composite samples.
Data Table Name:
SOMMOS_soil_texture_chemistry_data
Description:
Soil sample texture description and results of chemistry analysis.
Data Table Name:
SOMMOS_CN_isotope_data
Description:
Sample isotope analysis
Data Table Name:
SOMMOS_SDA_data
Description:
Sample selective dissolution analysis.
Data Table Name:
SOMMOS_TOC_data
Description:
Sample total organic carbon analysis.
Data Table Name:
SOMMOS_fluorescence_data
Description:
Sample fluorescence analysis.
Data Table Name:
SOMMOS_incubation_respiration_data
Description:
Incubation and respiration data from NEON soils
Data Table Name:
SOMMOS_14C_data
Description:
Sample 14C analysis
Other Name:
SOMMOS_naming_sheet
Description:
describes naming conventions and provides details on categorical variables
Other Name:
SOMMOS_metadata_companion
Description:
variable metadata for all files in data package
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/6124fec0030569ca1de9cf185fac37bb
Name:SOMMOS_site_list
Description:List of sites that have soil samples characterized and analyzed. Climate data added.
Number of Records:40
Number of Columns:14

Table Structure
Object Name:SOMMOS_site_list.csv
Size:5964 byte
Authentication:fa69527a16855275efb6cbc4ea889561 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 site_name_fullsite_idNEON_site_idstatelatitude_dec_deglongitude_dec_degincubation_siteprobable_soil_order_via_NRCSNEON_LinkNPP_05_14.kgCm2yrMATMAPMAP_ErefRH
Column Name:site_name_full  
site_id  
NEON_site_id  
state  
latitude_dec_deg  
longitude_dec_deg  
incubation_site  
probable_soil_order_via_NRCS  
NEON_Link  
NPP_05_14.kgCm2yr  
MAT  
MAP  
MAP_Eref  
RH  
Definition:Full NEON site nameFour letter SOMMOS site abbreviationFour letter NEON site abbreviationTwo letter US site abbreviationLatitude of NEON tower - verified in google earthLongitude of NEON tower - verified in google earthIs site selected for incubation?Probable soil order, based on NRCS field classification of the nearby NEON Megapitlink to NEON field site webpageMean annual NPP at the site level, 2005-2014, from MODIS https://modis.ornl.gov/sites/?list=all&network=NEONMean annual temperature at the site level, as based on GIS lookup from PRISM data, https://journals.ametsoc.org/doi/full/10.1175/JAMC-D-11-043.1Mean annual precipitation at the site level, as based on GIS lookup from PRISM data, https://journals.ametsoc.org/doi/full/10.1175/JAMC-D-11-043.1Mean annual precipitation minus reference evaporation at the site level, as based on GIS lookup from PRISM data, https://journals.ametsoc.org/doi/full/10.1175/JAMC-D-11-043.1Mean relative humidity %
Storage Type:string  
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Measurement Type:nominalnominalnominalnominalratiorationominalnominalnominalrationominalnominalnominalnominal
Measurement Values Domain:
DefinitionFull NEON site name
DefinitionFour letter SOMMOS site abbreviation
DefinitionFour letter NEON site abbreviation
DefinitionTwo letter US site abbreviation
Unitlatitude
Typereal
Unitlongitude
Typereal
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codeno
Definitionno
Source
Code Definition
Codeyes
Definitionyes
Source
DefinitionProbable soil order, based on NRCS field classification of the nearby NEON Megapit
Definitionlink to NEON field site webpage
UnitkilogramPerMeterSquared
Typereal
DefinitionMean annual temperature at the site level, as based on GIS lookup from PRISM data, https://journals.ametsoc.org/doi/full/10.1175/JAMC-D-11-043.1
DefinitionMean annual precipitation at the site level, as based on GIS lookup from PRISM data, https://journals.ametsoc.org/doi/full/10.1175/JAMC-D-11-043.1
DefinitionMean annual precipitation minus reference evaporation at the site level, as based on GIS lookup from PRISM data, https://journals.ametsoc.org/doi/full/10.1175/JAMC-D-11-043.1
DefinitionMean relative humidity %
Missing Value Code:              
CodeNA
Explno data
 
CodeNA
Explno data
       
Accuracy Report:                            
Accuracy Assessment:                            
Coverage:                            
Methods:                            

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/083287390792d3e2dadb8c0803366ee9
Name:SOMMOS_horizon_data
Description:Soil horizon characterization by site.
Number of Records:1024
Number of Columns:20

Table Structure
Object Name:SOMMOS_horizon_data.csv
Size:173174 byte
Authentication:364ee689ed9f4800347372b71831f987 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
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Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 site_idplotcore_idhorizonsample_idtop_depth_cmbottom_dept_cmthickness_cmboundary_distinctnesscolor_munsellcolor_moist_dryrootsporeseffervescence_classredoxymorphic_featuresped_void_surface_featuresmoisture_content_ggdry_mass_gws_bulk_density_gcm3notes
Column Name:site_id  
plot  
core_id  
horizon  
sample_id  
top_depth_cm  
bottom_dept_cm  
thickness_cm  
boundary_distinctness  
color_munsell  
color_moist_dry  
roots  
pores  
effervescence_class  
redoxymorphic_features  
ped_void_surface_features  
moisture_content_gg  
dry_mass_g  
ws_bulk_density_gcm3  
notes  
Definition:Four letter SOMMOS site abbreviationNEON Soil Plot number from whence the core was sampledFour letter SOMMOS site abbreviation + 6 number date of NEON coring + 2 number core ID + 2 number section IDHorizon designation as assigned during core processing and description in the lab (NRCS Field Book, Schoeneberger et al. 2012, 2-2)Four letter SOMMOS site abbreviation + 6 number date of NEON coring + 2 number core ID + 2 number section ID + horizon designationdepth at the top of the horizondepth at the bottom of the horizonthickness of the horizondistinctness of the boundary between the observed horizon and the horizon beneath it (NRCS Field Book, Schoeneberger et al. 2012, 2-6)Munsell color of the horizon matrix and/or any horizon mixtures (e.g., E/B) or inclusions (e.g., redoximorphic features, concentrations, depletions)moisture status of the horizon when Munsell color was determined (NRCS Field Book, Schoeneberger et al. 2012, 2-8)root quantity and size (NRCS Field Book, Schoeneberger et al. 2012, 2-70)pore quantity and size (NRCS Field Book, Schoeneberger et al. 2012, 2-73)effervescence class upon addition of HCl to the surface of the horizon (NRCS Field Book, Schoeneberger et al. 2012, 2-87)kind, quantity, size, etc. of redoximorphic features within the horizon matrix (NRCS Field Book, Schoeneberger et al. 2012, 2-10)kind, amount, continuity, etc. of ped and void surface features within the horizon (NRCS Field Book, Schoeneberger et al. 2012, 2-32)moisture content of the horizon as received in its core, expressed as grams of water per grams of dry soil - Gravimetric Water Contentoven-dry (105C >24hrs) mass, in grams, of the bulk, whole soil horizon samplebulk density of the whole soil, i.e., including coarse fragments, rootsNotes made by soil observer during description and processing
Storage Type:string  
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float  
string  
Measurement Type:nominalnominalnominalnominalnominalratioratiorationominalnominalnominalnominalnominalnominalnominalnominalratioratiorationominal
Measurement Values Domain:
DefinitionFour letter SOMMOS site abbreviation
DefinitionNEON Soil Plot number from whence the core was sampled
DefinitionFour letter SOMMOS site abbreviation + 6 number date of NEON coring + 2 number core ID + 2 number section ID
DefinitionHorizon designation as assigned during core processing and description in the lab (NRCS Field Book, Schoeneberger et al. 2012, 2-2)
DefinitionFour letter SOMMOS site abbreviation + 6 number date of NEON coring + 2 number core ID + 2 number section ID + horizon designation
Unitcentimeter
Typereal
Unitcentimeter
Typereal
Unitcentimeter
Typereal
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codenan
Definitionno data
Source
Code Definition
CodeA
DefinitionAbrupt (0.5 to < 2 cm)
Source
Code Definition
CodeC
DefinitionClear (2 to < 5 cm)
Source
Code Definition
CodeD
DefinitionDiffuse (≥ 15 cm)
Source
Code Definition
CodeG
DefinitionGradual (5 to < 15 cm)
Source
Code Definition
Codenone
Definitionnone
Source
Code Definition
CodeS
DefinitionSmooth (Planar with few or no irregularities)
Source
DefinitionMunsell color of the horizon matrix and/or any horizon mixtures (e.g., E/B) or inclusions (e.g., redoximorphic features, concentrations, depletions)
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codenan
Definitionno data
Source
Code Definition
Codeair dry
Definitionair dry
Source
Code Definition
Codedry
Definitiondry
Source
Code Definition
Codemoist
Definitionmoist
Source
Code Definition
Codemoist/dry
Definitionmoist/dry
Source
Definitionroot quantity and size (NRCS Field Book, Schoeneberger et al. 2012, 2-70)
Definitionpore quantity and size (NRCS Field Book, Schoeneberger et al. 2012, 2-73)
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codenan
Definitionno data
Source
Code Definition
CodeNE
DefinitionNoneffervescent - No bubbles form
Source
Code Definition
CodeSL
DefinitionSlightly Effervescent - Numerous bubbles form
Source
Code Definition
CodeST
DefinitionStrongly Effervescent - Bubbles form a low foam
Source
Code Definition
CodeVE
DefinitionViolently Effervescent - Bubbles rapidly form a thick foam
Source
Code Definition
CodeVS
DefinitionVery Slightly Effervescent - Few bubbles form
Source
Definitionkind, quantity, size, etc. of redoximorphic features within the horizon matrix (NRCS Field Book, Schoeneberger et al. 2012, 2-10)
Definitionkind, amount, continuity, etc. of ped and void surface features within the horizon (NRCS Field Book, Schoeneberger et al. 2012, 2-32)
UnitgramPerGram
Typereal
Unitgram
Typereal
UnitgramPerCentimeterCubed
Typereal
DefinitionNotes made by soil observer during description and processing
Missing Value Code:  
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
Accuracy Report:                                        
Accuracy Assessment:                                        
Coverage:                                        
Methods:                                        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/08bd31661852923aed0d4a48923525a0
Name:SOMMOS_sample_composite_data
Description:Characterization of composite samples.
Number of Records:291
Number of Columns:28

Table Structure
Object Name:SOMMOS_sample_composite_data.csv
Size:77866 byte
Authentication:48c3ad564406b80d9b23ec41a8420d9b Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 site_idhorizonsite_horizon_incubation_fractioncontributing_horizonscores_contributing_to_horizon_compositeincubation_siteSOMMOS_horizonhorizon_typeOSU_gVT_gUSFS_gUCB_gws_mass_airdry_gfine_mass_gcoarse_mass_groots_fine_gmass_remaining_lost_ghorizon_ordertotal_thickness_cmproportional_thickness_cmproportional_top_depth_cmproportional_bottom_depth_cmproportional_midpoint_depth_cmws_bulk_density_gcm3proportion_fine_mass_ggmass_fine_Mghamass_coarse_Mghanotes
Column Name:site_id  
horizon  
site_horizon_incubation_fraction  
contributing_horizons  
cores_contributing_to_horizon_composite  
incubation_site  
SOMMOS_horizon  
horizon_type  
OSU_g  
VT_g  
USFS_g  
UCB_g  
ws_mass_airdry_g  
fine_mass_g  
coarse_mass_g  
roots_fine_g  
mass_remaining_lost_g  
horizon_order  
total_thickness_cm  
proportional_thickness_cm  
proportional_top_depth_cm  
proportional_bottom_depth_cm  
proportional_midpoint_depth_cm  
ws_bulk_density_gcm3  
proportion_fine_mass_gg  
mass_fine_Mgha  
mass_coarse_Mgha  
notes  
Definition:Four letter SOMMOS site abbreviationhorizon designation of composite sampleID of the composite sample, as the concatenation of site ID, horizon, incubation status (pre vs. post), and soil fraction (all bulk soils aka whole soils aka WS)list of core#: followed by horizon names that make up compositenumber of cores contributing to compositeIs site selected for incubation?Is horizon a SOMMOS horizon, i.e., one of up to three per site that was selected for detailed laboratory characterization and potential incubation? IF a SOMMOS horizon THEN A-Horizon OR Upper B-Horizon OR Lower B-Horizon; ELSE nonemass fine (<2mm) remaining at OSU (Hatten, Gallo, Matosziuk)mass fine (<2mm) shipped to VT (Strahm, Weiglein, Possinger)mass fine (<2mm) shipped to USFS (Heckman, Klapperich, Zermeno)mass fine (<2mm) shipped to UCB (SanClements, Bowman)Total whole soil mass of air dry soilTotal fine (<2mm) soil mass of air dry soilTotal coarse (>2mm)soil mass of air dry soilTotal root mass of air dry soilMass remaining or lost during processing of sampleOrder of horizon in profileTotal thickness unadjusted for number of cores contributingTotal thickness adjusted by the number of cores contributing, see Nave et al. 2021, p.4depth at the top of the composite horizon, see Nave et al. 2021, p.4depth at the bottom of the composite horizon, see Nave et al. 2021, p.4depth at the mid-point of the composite horizon, see Nave et al. 2021, p.4bulk density of the whole soilproportion of fine (<2mm) in WSmass of fine (<2mm) per hectaremass of coarse (>2mm) per hectarenotes
Storage Type:string  
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float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
string  
Measurement Type:nominalnominalnominalnominalnominalnominalnominalnominalratioratioratioratioratioratioratioratiorationominalratioratioratioratioratioratioratioratiorationominal
Measurement Values Domain:
DefinitionFour letter SOMMOS site abbreviation
Definitionhorizon designation of composite sample
DefinitionID of the composite sample, as the concatenation of site ID, horizon, incubation status (pre vs. post), and soil fraction (all bulk soils aka whole soils aka WS)
Definitionlist of core#: followed by horizon names that make up composite
Definitionnumber of cores contributing to composite
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeN
Definitionno
Source
Code Definition
CodeY
Definitionyes
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeN
DefinitionNo
Source
Code Definition
CodeY
DefinitionYes
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeA-Horizon
DefinitionA-Horizon
Source
Code Definition
CodeLower B-Horizon
DefinitionLower B-Horizon
Source
Code Definition
Codenone
Definitionno horizon type
Source
Code Definition
CodeUpper B-Horizon
DefinitionUpper B-Horizon
Source
Unitgram
Typereal
Unitgram
Typereal
Unitgram
Typereal
Unitgram
Typereal
Unitgram
Typereal
Unitgram
Typereal
Unitgram
Typereal
Unitgram
Typereal
Unitgram
Typereal
DefinitionOrder of horizon in profile
Unitcentimeter
Typereal
Unitcentimeter
Typereal
Unitcentimeter
Typereal
Unitcentimeter
Typereal
Unitcentimeter
Typereal
UnitgramPerCentimeterCubed
Typereal
UnitgramPerGram
Typereal
UnitMg/ha
Typereal
UnitMg/ha
Typereal
Definitionnotes
Missing Value Code:              
Codenone
Explno horizon
Code-
Explnot enough sample to split
Code-
Explnot enough sample to split
Code-
Explnot enough sample to split
Code-
Explnot enough sample to split
   
CodeNA
Explno data
CodeNA
Explno data
 
CodeNA
Explno data
         
CodeNA
Explno data
 
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
Accuracy Report:                                                        
Accuracy Assessment:                                                        
Coverage:                                                        
Methods:                                                        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/d4ee302d9c24a6839403a5ea7ba8a396
Name:SOMMOS_soil_texture_chemistry_data
Description:Soil sample texture description and results of chemistry analysis.
Number of Records:288
Number of Columns:21

Table Structure
Object Name:SOMMOS_soil_texture_chemistry_data.csv
Size:32065 byte
Authentication:d614ce3c58d078290b908e9fe5fe6b08 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 site_idhorizonincubationfractionsite_id_horizon_incubation_fractionhorizon_typepHLOI_g100gbpca_total_bpca_gkgsoilAl_NH4Act_uggCa_NH4Act_uggK_NH4Act_uggMg_NH4Act_uggNa_NH4Act_uggAl_KCl_uggFe_KCl_uggproportion_sandproportion_siltproportion_claytotal_ssa_m2gnotes
Column Name:site_id  
horizon  
incubation  
fraction  
site_id_horizon_incubation_fraction  
horizon_type  
pH  
LOI_g100g  
bpca_total_bpca_gkgsoil  
Al_NH4Act_ugg  
Ca_NH4Act_ugg  
K_NH4Act_ugg  
Mg_NH4Act_ugg  
Na_NH4Act_ugg  
Al_KCl_ugg  
Fe_KCl_ugg  
proportion_sand  
proportion_silt  
proportion_clay  
total_ssa_m2g  
notes  
Definition:Four letter SOMMOS site abbreviationhorizon designation of composite samplePhase of incubation (see naming sheet)fraction of soil (see naming sheet)ID of the composite sample, as the concatenation of site ID, horizon, incubation status (pre vs. post), and soil fraction (all bulk soils aka whole soils aka WS)A-Horizon, Upper B-Horizon, Lower B-HorizonpH of sample 1:2 in water% loss on ignition of the sample, as mass lost after 3 hours at 550 Ctotal grams of BPCA (B3, B4, B5, B6) per kg soil. BPCA-Benzene PolyCarboxylic Acidmass of Al extracted using ammonium acetate (pH 7.1) from air dried soil. Values corrected for air dry to oven dry soil mass. NA implies no sample run, and 0 implies no detectable quantitymass of Ca extracted using ammonium acetate (pH 7.1) from air dried soil. Values corrected for air dry to oven dry soil mass. NA implies no sample run, and 0 implies no detectable quantitymass of K extracted using ammonium acetate (pH 7.1) from air dried soil. Values corrected for air dry to oven dry soil mass. NA implies no sample run, and 0 implies no detectable quantitymass of Mg extracted using ammonium acetate (pH 7.1) from air dried soil. Values corrected for air dry to oven dry soil mass. NA implies no sample run, and 0 implies no detectable quantitymass of Na extracted using ammonium acetate (pH 7.1) from air dried soil. Values corrected for air dry to oven dry soil mass. NA implies no sample run, and 0 implies no detectable quantitymass of Al extracted using KCl from air dry soil. Values corrected for air dry to oven dry soil mass. mass of Fe extracted using KCl from dry soil. Values corrected for air dry to oven dry soil mass. mass of sand per gram of dry soil as determined by laser PS analyermass of silt per gram of dry soil as determined by laser PS analyermass of clay per gram of dry soil as determined by laser PS analyerparticle specific surface area as determiend by summing the surface area of each particl size class notes about sample
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Measurement Type:nominalnominalnominalnominalnominalnominalratioratioratioratioratioratioratioratioratioratioratioratioratiorationominal
Measurement Values Domain:
DefinitionFour letter SOMMOS site abbreviation
Definitionhorizon designation of composite sample
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodePRE
DefinitionPre-incubation sample
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBULK
Definitionbulk soil sample or "Whole Soil"
Source
DefinitionID of the composite sample, as the concatenation of site ID, horizon, incubation status (pre vs. post), and soil fraction (all bulk soils aka whole soils aka WS)
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codenan
Definitionno data
Source
Code Definition
CodeA-Horizon
DefinitionA-Horizon
Source
Code Definition
CodeLower B-Horizon
DefinitionLower B-Horizon
Source
Code Definition
CodeUpper B-Horizon
DefinitionUpper B-Horizon
Source
UnitpH
Typereal
UnitgramPerGram *100
Typereal
UnitgramPerKilogram
Typereal
UnitugPerGram
Typereal
UnitugPerGram
Typereal
UnitugPerGram
Typereal
UnitugPerGram
Typereal
UnitugPerGram
Typereal
UnitugPerGram
Typereal
UnitugPerGram
Typereal
UnitgramPerGram
Typereal
UnitgramPerGram
Typereal
UnitgramPerGram
Typereal
Unitm2PerGram
Typereal
Definitionnotes about sample
Missing Value Code:          
Codenan
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
Accuracy Report:                                          
Accuracy Assessment:                                          
Coverage:                                          
Methods:                                          

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/7bea05c4d67d20c0425b98540bb5939e
Name:SOMMOS_CN_isotope_data
Description:Sample isotope analysis
Number of Records:476
Number of Columns:13

Table Structure
Object Name:SOMMOS_CN_isotope_data.csv
Size:76224 byte
Authentication:0ab397334309e02bb1b0d83ddfb6c166 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 site_idsite_horizon_incubation_fractionTC_EA_pctN_EA_pctTC_IRMS_lower_pctTC_IRMS_upper_pctOC_IRMS_lower_pctOC_IRMS_upper_pctN_IRMS_lower_pctN_IRMS_upper_pctCN_ratio_IRMSd13C_permilled15N_permille
Column Name:site_id  
site_horizon_incubation_fraction  
TC_EA_pct  
N_EA_pct  
TC_IRMS_lower_pct  
TC_IRMS_upper_pct  
OC_IRMS_lower_pct  
OC_IRMS_upper_pct  
N_IRMS_lower_pct  
N_IRMS_upper_pct  
CN_ratio_IRMS  
d13C_permille  
d15N_permille  
Definition:Four letter SOMMOS site abbreviationID of the composite sample, as the concatenation of site ID, horizon, incubation status (pre vs. post), and soil fraction (all bulk soils aka whole soils aka WS)Total C (corrected w/ air-dry mass:oven-dry mass ratio) from vario MAX elemental analyzer; NOTES: (1) BULK samples only b/c of large sample mass requirement, (2) samples NOT acidified b/c of methodology issuesTotal N (corrected w/ air-dry mass:oven-dry mass ratio) from vario MAX elemental analyzer; NOTES: (1) BULK samples only b/c of large sample mass requirement, (2) samples NOT acidified b/c of methodology issuesTotal C (lower bound) (corrected w/ air-dry mass:oven-dry mass ratio) from IsoPrime EA-IRMS; NOTES: (1) Bounded b/c of some samples being below MQL (minimum quantitation limit) and/or MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL; if lower bound > 0 and lower bound ≠ upper bound, MDL < value < MQL; if lower bound = upper bound, value > MQL], (2) since this is total C, samples NOT acidified, (3) HF samples from calcareous horizons (horizons with "k" suffix) do not have total C values b/c they were acidified prior to analysisTotal C (upper bound) (corrected w/ air-dry mass:oven-dry mass ratio) from IsoPrime EA-IRMS; NOTES: (1) Bounded b/c of some samples being below MQL (minimum quantitation limit) and/or MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL; if lower bound > 0 and lower bound ≠ upper bound, MDL < value < MQL; if lower bound = upper bound, value > MQL], (2) since this is total C, samples NOT acidified, (3) HF samples from calcareous horizons (horizons with "k" suffix) do not have total C values b/c they were acidified prior to analysisOrganic C (lower bound) (corrected w/ air-dry mass:oven-dry mass ratio) from IsoPrime EA-IRMS; NOTES: (1) Bounded b/c of some samples being below MQL (minimum quantitation limit) and/or MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL; if lower bound > 0 and lower bound ≠ upper bound, MDL < value < MQL; if lower bound = upper bound, value > MQL], (2) if "k" not in horizon suffix, assumed OC = TC, (3) if "k" in horizon suffix, acidified sample via fumigation (Harris et al., 2001) prior to analysisOrganic C (upper bound) (corrected w/ air-dry mass:oven-dry mass ratio) from IsoPrime EA-IRMS; NOTES: (1) Bounded b/c of some samples being below MQL (minimum quantitation limit) and/or MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL; if lower bound > 0 and lower bound ≠ upper bound, MDL < value < MQL; if lower bound = upper bound, value > MQL], (2) if "k" not in horizon suffix, assumed OC = TC, (3) if "k" in horizon suffix, acidified sample via fumigation (Harris et al., 2001) prior to analysisTotal N (lower bound) (corrected w/ air-dry mass:oven-dry mass ratio) from IsoPrime EA-IRMS; NOTES: (1) Bounded b/c of some samples being below MQL (minimum quantitation limit) and/or MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL; if lower bound > 0 and lower bound ≠ upper bound, MDL < value < MQL; if lower bound = upper bound, value > MQL], (2) samples NOT acidifiedTotal N (upper bound) (corrected w/ air-dry mass:oven-dry mass ratio) from IsoPrime EA-IRMS; NOTES: (1) Bounded b/c of some samples being below MQL (minimum quantitation limit) and/or MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL; if lower bound > 0 and lower bound ≠ upper bound, MDL < value < MQL; if lower bound = upper bound, value > MQL], (2) samples NOT acidifiedC:N molar ratio (based on averages of bounds) from IsoPrime EA-IRMS; NOTES: (1) Organic C used in calculation of ratioCarbon-13 value (relative to VPDB) from IsoPrime EA-IRMS; NOTES: (1) If "k" in horizon suffix, acidified sample via fumigation (Harris et al., 2001) prior to analysis (see IRMS_note column for exceptions)Nitrogen-15 value (relative to AIR) from IsoPrime EA-IRMS; NOTES: (1) If "k" in horizon suffix, acidified sample via fumigation (Harris et al., 2001) prior to analysis (see IRMS_note column for exceptions)
Storage Type:string  
string  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
Measurement Type:nominalnominalratioratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
DefinitionFour letter SOMMOS site abbreviation
DefinitionID of the composite sample, as the concatenation of site ID, horizon, incubation status (pre vs. post), and soil fraction (all bulk soils aka whole soils aka WS)
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
UnitmolePerMole
Typereal
Unitper mille
Typereal
Unitper mille
Typereal
Missing Value Code:    
CodeNA
Explnot data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
Accuracy Report:                          
Accuracy Assessment:                          
Coverage:                          
Methods:                          

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/4f4a56af561af447aef2c04698d8364a
Name:SOMMOS_SDA_data
Description:Sample selective dissolution analysis.
Number of Records:119
Number of Columns:30

Table Structure
Object Name:SOMMOS_SDA_data.csv
Size:60384 byte
Authentication:a321e9025341f61e1b2d800497886a8f Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 site_idhorizonincubationfractionsite_id_horizon_incubation_fractionhorizon_typeDC_Al_lower_pctDC_Al_upper_pctDC_Fe_lower_pctDC_Fe_upper_pctDC_Mn_lower_pctDC_Mn_upper_pctDC_Si_lower_pctDC_Si_upper_pctSP_Al_lower_pctSP_Al_upper_pctSP_Fe_lower_pctSP_Fe_upper_pctSP_Mn_lower_pctSP_Mn_upper_pctSP_Si_lower_pctSP_Si_upper_pctAO_Al_lower_pctAO_Al_upper_pctAO_Fe_lower_pctAO_Fe_upper_pctAO_Mn_lower_mg_per_kgAO_Mn_upper_mg_per_kgAO_Si_lower_pctAO_Si_upper_pct
Column Name:site_id  
horizon  
incubation  
fraction  
site_id_horizon_incubation_fraction  
horizon_type  
DC_Al_lower_pct  
DC_Al_upper_pct  
DC_Fe_lower_pct  
DC_Fe_upper_pct  
DC_Mn_lower_pct  
DC_Mn_upper_pct  
DC_Si_lower_pct  
DC_Si_upper_pct  
SP_Al_lower_pct  
SP_Al_upper_pct  
SP_Fe_lower_pct  
SP_Fe_upper_pct  
SP_Mn_lower_pct  
SP_Mn_upper_pct  
SP_Si_lower_pct  
SP_Si_upper_pct  
AO_Al_lower_pct  
AO_Al_upper_pct  
AO_Fe_lower_pct  
AO_Fe_upper_pct  
AO_Mn_lower_mg_per_kg  
AO_Mn_upper_mg_per_kg  
AO_Si_lower_pct  
AO_Si_upper_pct  
Definition:Four letter SOMMOS site abbreviationHorizon designation as assigned during core processing and description in the lab (NRCS Field Book, Schoeneberger et al. 2012, 2-2)incubation statusfraction of sample analyzedunique sample idtype of horizon sampledDithionite-citrate extractable Al (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsDithionite-citrate extractable Al (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsDithionite-citrate extractable Fe (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsDithionite-citrate extractable Fe (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsDithionite-citrate extractable Mn (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsDithionite-citrate extractable Mn (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsDithionite-citrate extractable Si (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsDithionite-citrate extractable Si (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsSodium pyrophosphate extractable Al (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsSodium pyrophosphate extractable Al (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsSodium pyrophosphate extractable Fe (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsSodium pyrophosphate extractable Fe (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsSodium pyrophosphate extractable Mn (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsSodium pyrophosphate extractable Mn (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsSodium pyrophosphate extractable Si (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsSodium pyrophosphate extractable Si (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsAmmonium oxalate extractable Al (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsAmmonium oxalate extractable Al (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsAmmonium oxalate extractable Fe (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsAmmonium oxalate extractable Fe (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsAmmonium oxalate extractable Mn (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsAmmonium oxalate extractable Mn (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsAmmonium oxalate extractable Si (lower bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizonsAmmonium oxalate extractable Si (upper bound); NOTES: (1) Bounded b/c of some samples being below MDL (minimum detection limit) [if lower bound = 0, 0 < value < MDL]; (2) SDA data included for organic horizons, but it is not advised to interpret this data in the same way as for mineral horizons
Storage Type:string  
string  
string  
string  
string  
string  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
Measurement Type:nominalnominalnominalnominalnominalnominalratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
DefinitionFour letter SOMMOS site abbreviation
DefinitionHorizon designation as assigned during core processing and description in the lab (NRCS Field Book, Schoeneberger et al. 2012, 2-2)
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodePRE
DefinitionPre-incubation sample
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBULK
Definitionbulk soil sample or "Whole Soil"
Source
Definitionunique sample id
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeA
DefinitionA
Source
Code Definition
CodeLower B
DefinitionLower B
Source
Code Definition
CodeUpper B
DefinitionUpper B
Source
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
UnitmilligramPerKilogram
Typereal
UnitmilligramPerKilogram
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Missing Value Code:                                                            
Accuracy Report:                                                            
Accuracy Assessment:                                                            
Coverage:                                                            
Methods:                                                            

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/894317318f2d905ae1fd75f4526a4386
Name:SOMMOS_TOC_data
Description:Sample total organic carbon analysis.
Number of Records:240
Number of Columns:7

Table Structure
Object Name:SOMMOS_TOC_data.csv
Size:14927 byte
Authentication:4644c7f5794389f37c963de4981df530 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 site_idhorizonextractincubationfractionC_conc_mg_gC_error_mg_g
Column Name:site_id  
horizon  
extract  
incubation  
fraction  
C_conc_mg_g  
C_error_mg_g  
Definition:Four letter SOMMOS site abbreviationhorizon designation of composite sampleextraction methodPre-incubation samplefraction of soilExtractable carbon concentrationError extractable carbon concentration
Storage Type:string  
string  
string  
string  
string  
float  
float  
Measurement Type:nominalnominalnominalnominalnominalrationominal
Measurement Values Domain:
DefinitionFour letter SOMMOS site abbreviation
Definitionhorizon designation of composite sample
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeCWE
Definitioncold water extraction
Source
Code Definition
CodeHWE
Definitionhot water extraction
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodePRE
DefinitionPre-incubation sample
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBULK
Definitionbulk soil sample or "Whole Soil"
Source
UnitmicrogramPerGram
Typereal
DefinitionError extractable carbon concentration
Missing Value Code:              
Accuracy Report:              
Accuracy Assessment:              
Coverage:              
Methods:              

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/4fc25b37196eb1a1475a5eb2900eb06a
Name:SOMMOS_fluorescence_data
Description:Sample fluorescence analysis.
Number of Records:370
Number of Columns:12

Table Structure
Object Name:SOMMOS_Fluorescence_data.csv
Size:32398 byte
Authentication:592f1ed77839eb52b7485ad05b37f324 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 sample_namesite_idhorizonextractrepdilutedFImax_em_370abs_254HIXfreshness_indexnotes
Column Name:sample_name  
site_id  
horizon  
extract  
rep  
diluted  
FI  
max_em_370  
abs_254  
HIX  
freshness_index  
notes  
Definition:unique sample name derived from combining site_id, horizon, extract, rep, and dilution variablesFour letter SOMMOS site abbreviationHorizon designation as assigned during core processing and description in the lab (NRCS Field Book, Schoeneberger et al. 2012, 2-2)extraction method (hot water or cold water extraction)repicate numberindicates sample was dilutedFluorescence indexmaximum emission at 370absorbance at 254Humification indexfreshness_indexnotes
Storage Type:string  
string  
string  
string  
string  
string  
float  
float  
float  
float  
float  
string  
Measurement Type:nominalnominalnominalnominalnominalnominalnominalnominalratioratiorationominal
Measurement Values Domain:
Definitionunique sample name derived from combining site_id, horizon, extract, rep, and dilution variables
DefinitionFour letter SOMMOS site abbreviation
DefinitionHorizon designation as assigned during core processing and description in the lab (NRCS Field Book, Schoeneberger et al. 2012, 2-2)
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeCWE
Definitioncold water extraction
Source
Code Definition
CodeHWE
Definitionhot water extraction
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
Definitionrep number 1
Source
Code Definition
Code2
Definitionrep number 2
Source
Code Definition
Code3
Definitionrep number 3
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codedil
Definitiondiluted
Source
DefinitionFluorescence index
Definitionmaximum emission at 370
Unitpercent
Typereal
Unitindex
Typereal
Min0.0 
Max
Unitindex
Typereal
Definitionnotes
Missing Value Code:                      
CodeNA
Explno data
Accuracy Report:                        
Accuracy Assessment:                        
Coverage:                        
Methods:                        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/434fc66c6a302cd47cc557f3484ee620
Name:SOMMOS_incubation_respiration_data
Description:Incubation and respiration data from NEON soils
Number of Records:348
Number of Columns:18

Table Structure
Object Name:SOMMOS_incubation_respiration_data.csv
Size:48816 byte
Authentication:ad17587c990b806ae71371809d7163de Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 site_idhorizonincubation_treatmenttemp_treatment_degC_above_MSTmoisture_treatment_kPaMST_degCincubation_temp_degCfractionhorizon_typesample_nameoven_dry_mass_gt13_cumul_resp_ugC_per_gsoilt13_cumul_spec_resp_ugC_per_gCt26_cumul_resp_ugC_per_gsoilt26_cumul_spec_resp_ugC_per_gCt52_cumul_resp_ugC_per_gsoilt52_cumul_spec_resp_ugC_per_gCnotes
Column Name:site_id  
horizon  
incubation_treatment  
temp_treatment_degC_above_MST  
moisture_treatment_kPa  
MST_degC  
incubation_temp_degC  
fraction  
horizon_type  
sample_name  
oven_dry_mass_g  
t13_cumul_resp_ugC_per_gsoil  
t13_cumul_spec_resp_ugC_per_gC  
t26_cumul_resp_ugC_per_gsoil  
t26_cumul_spec_resp_ugC_per_gC  
t52_cumul_resp_ugC_per_gsoil  
t52_cumul_spec_resp_ugC_per_gC  
notes  
Definition:Four letter SOMMOS site abbreviationHorizon designation as assigned during core processing and description in the lab (NRCS Field Book, Schoeneberger et al. 2012, 2-2)Incubation temperature treatment (codes: 0MST or 5MST) and moisture treatment (codes: 33, 150, 400)Change in incubation temperature relative to ambient incubation temperature (approx. MST) Incubation moisture (kPa) Site-level mean summer temperature (used to determine incubation temperature bin). Derived from PRISM. Settings used: PRISM 30-year normals, 1981-2010; Resolution: 800 m; Units: SI (metric); Interpolate grid cell values: Yes; Climate variable: Mean temp.Incubation temperature (ambient temperature treatment, approx. MST) Fraction of soil (see naming sheet); all BULKA-Horizon OR Upper B-HorizonFour letter SOMMOS site abbreviation + horizon + incubation treatment + temperture treatment + moisture treatment + site mean temp + incubation temperture + fraction + horizon typeMass of dry soil used in incubation (rounded to 0.01 g)Cumulative respiration (normalized by oven-dry sample mass) at t = 13 weeks; NOTES: (1) For samples from horizons with "k" horizon suffix, 13CO2 and solid phase 13C data used to partition CO2 between organic and inorganic C sources, which means all reported respiration data are assumed to correspond solely with the decomposition of organic matter (rounded to 1 ug CO2-C/(g soil))Cumulative specific respiration (normalized by sample C mass) at t = 13 weeks; NOTES: (1) For samples from horizons with "k" horizon suffix, 13CO2 and solid phase 13C data used to partition CO2 between organic and inorganic C sources, which means all reported respiration data are assumed to correspond solely with the decomposition of organic matter (rounded to 1 ug CO2-C/(g C))Cumulative respiration (normalized by oven-dry sample mass) at t = 26 weeks; NOTES: (1) For samples from horizons with "k" horizon suffix, 13CO2 and solid phase 13C data used to partition CO2 between organic and inorganic C sources, which means all reported respiration data are assumed to correspond solely with the decomposition of organic matter (rounded to 1 ug CO2-C/(g soil))Cumulative specific respiration (normalized by sample C mass) at t = 26 weeks; NOTES: (1) For samples from horizons with "k" horizon suffix, 13CO2 and solid phase 13C data used to partition CO2 between organic and inorganic C sources, which means all reported respiration data are assumed to correspond solely with the decomposition of organic matter (rounded to 1 ug CO2-C/(g C))Cumulative respiration (normalized by oven-dry sample mass) at t = 52 weeks; NOTES: (1) For samples from horizons with "k" horizon suffix, 13CO2 and solid phase 13C data used to partition CO2 between organic and inorganic C sources, which means all reported respiration data are assumed to correspond solely with the decomposition of organic matter (rounded to 1 ug CO2-C/(g soil))Cumulative specific respiration (normalized by sample C mass) at t = 52 weeks; NOTES: (1) For samples from horizons with "k" horizon suffix, 13CO2 and solid phase 13C data used to partition CO2 between organic and inorganic C sources, which means all reported respiration data are assumed to correspond solely with the decomposition of organic matter (rounded to 1 ug CO2-C/(g C))notes about sample
Storage Type:string  
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string  
string  
float  
float  
string  
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string  
float  
float  
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Measurement Type:nominalnominalnominalnominalnominalratiorationominalnominalnominalratioratioratioratioratioratiorationominal
Measurement Values Domain:
DefinitionFour letter SOMMOS site abbreviation
DefinitionHorizon designation as assigned during core processing and description in the lab (NRCS Field Book, Schoeneberger et al. 2012, 2-2)
DefinitionIncubation temperature treatment (codes: 0MST or 5MST) and moisture treatment (codes: 33, 150, 400)
DefinitionChange in incubation temperature relative to ambient incubation temperature (approx. MST)
DefinitionIncubation moisture (kPa)
Unitcelsius
Typereal
Unitcelsius
Typereal
DefinitionFraction of soil (see naming sheet); all BULK
DefinitionA-Horizon OR Upper B-Horizon
DefinitionFour letter SOMMOS site abbreviation + horizon + incubation treatment + temperture treatment + moisture treatment + site mean temp + incubation temperture + fraction + horizon type
Unitgram
Typereal
UnitmicrogramPerGram
Typereal
UnitmicrogramPerGram
Typereal
UnitmicrogramPerGram
Typereal
UnitmicrogramPerGram
Typereal
UnitmicrogramPerGram
Typereal
UnitmicrogramPerGram
Typereal
Definitionnotes about sample
Missing Value Code:                      
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
Accuracy Report:                                    
Accuracy Assessment:                                    
Coverage:                                    
Methods:                                    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/9508ac3ae9bf1dbea60fecb2461d4b27
Name:SOMMOS_14C_data
Description:Sample 14C analysis
Number of Records:115
Number of Columns:15

Table Structure
Object Name:SOMMOS_14C_data.csv
Size:12791 byte
Authentication:1763824efc02bcdb81b584ab91d0d5d2 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 site_idhorizonincubationfractionsite_id_horizon_incubation_fractionAMS_labAMS_lab_idfraction_modernfraction_modern_errorDelta14CDelta14C_errorage_14Cage_14C_errord13Cdate_measured
Column Name:site_id  
horizon  
incubation  
fraction  
site_id_horizon_incubation_fraction  
AMS_lab  
AMS_lab_id  
fraction_modern  
fraction_modern_error  
Delta14C  
Delta14C_error  
age_14C  
age_14C_error  
d13C  
date_measured  
Definition:Four letter SOMMOS site abbreviationhorizon designation of composite samplefraction of soil (see naming sheet)fraction of soil (see naming sheet)ID of the composite sample, as the concatenation of site ID, horizon, incubation status (pre vs. post), and soil fraction (all bulk soils aka whole soils aka WS)lab locationUnique sample identifier assigned by the AMS lab to each radiocarbon datefraction modern of sampleerror of fmDelta14C of sampleerror of Delta14C14C age of sampleerror of 14C ageThe d13C value used for correction of 14C measurement. Estimated values were used for measurements done at CAMS as their AMS is not capable of measuring the 12C/13C ratio. "Inline" indicates that d13C values used for correction were measured on the AMS at UCI.Date of radiocarbon measurement
Storage Type:string  
string  
string  
string  
string  
string  
float  
string  
float  
float  
float  
string  
float  
string  
dateTime  
Measurement Type:nominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominaldateTime
Measurement Values Domain:
DefinitionFour letter SOMMOS site abbreviation
Definitionhorizon designation of composite sample
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodePRE
DefinitionPRE = Pre-incubation sample, 0 = site-specific mean summer temperature (MST), 5 = MST + 5 ºC, and the numbers 400, 150, 33 correspond to the tension values (in kPa) corresponding to limited microbial growth, limited microbial movement, and optimal microbial growth and movement (field capacity), respectively (Harris, 1981 – see Macrosystems proposal for full reference)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBULK
Definitionbulk soil sample or "Whole Soil"
Source
DefinitionID of the composite sample, as the concatenation of site ID, horizon, incubation status (pre vs. post), and soil fraction (all bulk soils aka whole soils aka WS)
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codenan
Definitionno lab designated
Source
Code Definition
CodeCAMS
DefinitionCenter for Accelerator Mass Spectrometry, Lawrence Livermore National Lab
Source
Code Definition
CodeUCI
DefinitionW.M. Keck Carbon Cycle Accelerator Mass Spectrometry Lab, University of California
Source
DefinitionUnique sample identifier assigned by the AMS lab to each radiocarbon date
Definitionfraction modern of sample
Definitionerror of fm
DefinitionDelta14C of sample
Definitionerror of Delta14C
Definition14C age of sample
Definitionerror of 14C age
DefinitionThe d13C value used for correction of 14C measurement. Estimated values were used for measurements done at CAMS as their AMS is not capable of measuring the 12C/13C ratio. "Inline" indicates that d13C values used for correction were measured on the AMS at UCI.
FormatDD-MM-YYYY
Precision
Missing Value Code:          
CodeNA
Explno data
CodeNA
Explno data
 
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
CodeNA
Explno data
Accuracy Report:                              
Accuracy Assessment:                              
Coverage:                              
Methods:                              

Non-Categorized Data Resource

Name:SOMMOS_naming_sheet
Entity Type:xlsx
Description:describes naming conventions and provides details on categorical variables
Physical Structure Description:
Object Name:SOMMOS_naming_sheet.xlsx
Size:11163 byte
Authentication:64980f050379ebb41162ece773fbd443 Calculated By MD5
Externally Defined Format:
Format Name:xlsx
Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/c3d89a07316aa91e433d4b4a6259e7a9

Non-Categorized Data Resource

Name:SOMMOS_metadata_companion
Entity Type:csv
Description:variable metadata for all files in data package
Physical Structure Description:
Object Name:SOMMOS_metadata_companion.csv
Size:33141 byte
Authentication:a323a7830b16420f604177d98814598f Calculated By MD5
Externally Defined Format:
Format Name:csv
Data:https://pasta-s.lternet.edu/package/data/eml/edi/499/6/5949c66766adb35dab77415c69d0e523

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularysoil carbon, soil chemistry, soil horizons, soil organic matter
(No thesaurus)radiocarbon, density fraction, calcium carbonate,  oxyhydroxides

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Samples were collected for the SOMMOS project from each of the five centrally located Soil Array Plots immediately surrounding the eddy-covariance tower at each NEON site between February 2015 and October 2018. At each site, NEON staff used a hydraulic corer (7.6 cm diameter for permafrost, 4.5 cm diameter for all others) to sample in 1 m increments to a depth of refusal by rock, 2 m (most soils), or 3 m (when possible in permafrost soils). Cores, capped and contained in clear butyrate plastic liners, were shipped on ice to the Oregon State University Core Marine Geological Repository Laboratory, where they were stored up to 8 weeks at 4C until processing and description, typically within 2 weeks of arrival, according to U.S. Department of Agriculture-Natural Resources Conservation Service (USDA-NRCS) protocols (Schoeneberger et al. 2012).

During processing, the five SOM-MOS profiles per NEON site were described individually, and identical genetic horizons were composited across those cores possessing them. Individual composited horizon samples were homogenized, split, and shared among collaborating facilities where characterization was completed according to NRCS methods (Burt et al. 2004) as detailed in Heckman et al. (2020). Incubation experiments were conducted as described in Weiglein et al. (2021).

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Lucas E Nave
Organization:University of Michigan Biological Station
Position:Associate Research Scientist
Email Address:
lukenave@umich.edu
Id:https://orcid.org/0000-0001-8258-8335
Individual: Katherine A Heckman
Organization:USDA - Forest Service Northern Research Station
Position:Research Scientist
Email Address:
katherine.a.heckman@usda.gov
Id:https://orcid.org/0000-0003-2265-4542
Individual: Maggie Bowman
Organization:Pacific Northwest National Laboratory
Position:Post Doctorate RA B
Email Address:
margaret.bowman@colorado.edu
Id:https://orcid.org/0000-0001-8825-1098
Individual: Adrian C Gallo
Organization:Oregon State University
Position:Graduate Student (PhD)
Email Address:
galloa@oregonstate.edu
Id:https://orcid.org/0000-0001-7913-9280
Individual: Jeff Hatten
Organization:Oregon State University
Position:Associate Professor
Email Address:
jeff.hatten@oregonstate.edu
Id:https://orcid.org/0000-0002-1685-6351
Individual: Lauren Matosziuk
Organization:Oregon State University
Position:Research Associate
Id:https://orcid.org/0000-0001-9485-6886
Individual: Angela Possinger
Organization:Virginia Tech
Position:Postdoctorial Associate
Email Address:
arp264@vt.edu
Id:https://orcid.org/0000-0003-2518-0979
Individual: Michael SanClements
Organization:National Ecological Observatory Network (NEON)
Position:Lead Research Scientist
Email Address:
msanclements@battelleecology.org
Id:https://orcid.org/0000-0002-1962-3561
Individual: Brian Strahm
Organization:Virginia Tech
Position:Professor
Email Address:
brian.strahm@vt.edu
Id:https://orcid.org/0000-0002-4025-2304
Individual: Tyler L Weiglein
Organization:Virginia Tech
Position:Graduate Student (PhD)
Email Address:
weiglein@vt.edu
Id:https://orcid.org/0000-0003-0656-7633
Individual: Chris Swanston
Organization:USDA - Forest Service Northern Research Station
Position:Research Ecologist and Program Leader
Email Address:
christopher.swanston@usda.gov
Id:https://orcid.org/0000-0003-2167-0970
Contacts:
Individual: Lucas E Nave
Organization:University of Michigan Biological Station
Position:Associate Research Scientist
Email Address:
lukenave@umich.edu
Id:https://orcid.org/0000-0001-8258-8335
Individual: Katherine A Heckman
Organization:USDA - Forest Service Northern Research Station
Position:Research Scientist
Email Address:
katherine.a.heckman@usda.gov
Id:https://orcid.org/0000-0003-2265-4542
Associated Parties:
Individual: Jason M Tallant
Organization:University of Michigan Biological Station
Position:Data Manager
Email Address:
jtallant@umich.edu
Id:https://orcid.org/0000-0003-4790-8772
Role:Metadata Compiler

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2014
End:
2019
Geographic Region:
Description:40 National Ecological Observatory Network (NEON) Core Sites and Relocatable Sites
Bounding Coordinates:
Northern:  71.28241Southern:  28.12505
Western:  -156.61936Eastern:  -71.28737

Project

Parent Project Information:

Title:Carbon Trends and Management
Personnel:
Individual: Lucas E Nave
Organization:University of Michigan Biological Station
Position:Associate Research Scientist
Email Address:
lukenave@umich.edu
Id:https://orcid.org/0000-0001-8258-8335
Role:PI
Abstract:

Carbon Trends and Management assesses the stocks, sequestration, management, and vulnerability of carbon at ecosystem to global scales and applies this knowledge through outreach to help managers incorporate climate considerations into forest carbon management.

Additional Award Information:
Funder:National Science Foundation
Number:1340681
Title:Determining how Organic Matter is Stabilized using a Unique Set of Soil Samples from across the U.S.
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=1340681&HistoricalAwards=false
Other Metadata

Additional Metadata

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        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'Mg/ha'
        |     |     |     |  \___attribute 'name' = 'Mg/ha'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'megagram/hectare'
        |     |     |     |___text '\n        '
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        |     |     |     |  \___attribute 'id' = 'gramPerGram *100'
        |     |     |     |  \___attribute 'name' = 'gramPerGram *100'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'g mass loss/g dry soil * 100'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
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        |     |     |     |  \___attribute 'id' = 'gramPerKilogram'
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        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'g BPCA (B3-B6) / kg soil'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'ugPerGram'
        |     |     |     |  \___attribute 'name' = 'ugPerGram'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'ug/g dry soil'
        |     |     |     |___text '\n        '
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        |     |     |     |  \___attribute 'id' = 'm2PerGram'
        |     |     |     |  \___attribute 'name' = 'm2PerGram'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'm2/g dry soil'
        |     |     |     |___text '\n        '
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        |     |     |     |     |___text 'pH is a measure of how acidic/basic water is. The range goes from 0 to 14, with 7 being neutral.'
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        |     |     |     |___text '\n          '
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        |     |     |     |  \___attribute 'id' = 'latitude'
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        |     |     |     |___text '\n          '
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        |     |     |     |___text '\n        '
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        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'per mille'
        |     |     |     |  \___attribute 'name' = 'per mille'
        |     |     |     |___text '\n          '
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        |     |     |     |___text '\n        '
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Additional Metadata

additionalMetadata
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        |     |        \___attribute 'app' = 'ezEML'
        |     |        \___attribute 'release' = '2021.12.01'
        |     |___text '\n    '
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EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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