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Respiration, isotope composition, and carbon source partitioning from incubations of soil amended with litter and isotope-labeled lignin

General Information
Data Package:
Local Identifier:edi.519.2
Title:Respiration, isotope composition, and carbon source partitioning from incubations of soil amended with litter and isotope-labeled lignin
Abstract:

We incubated 10 forest soils (collected from sites across North America, including the Luquillo LTER/CZO) in the laboratory for over two years to quantify the decomposition of carbon derived from added litter and lignin, as well as from extant soil organic matter. Each soil was subjected to two substrate addition treatments: a) litter derived from a C4 grass precipitated with 13C-enriched lignin, or the same C4 grass litter was precipitated with natural-abundance lignin. The concentrations and delta13C composition of carbon dioxide produced from each soil were measured periodically over time and partitioned into sources (soil organic matter, litter, and added lignin) using isotope mixing models. The methods and results are described in detail by a manuscript in Ecology (Hall et al., 2020).

Publication Date:2020-05-26

Time Period
Begin:
2017-02-01
End:
2019-02-28

People and Organizations
Contact:Hall, Steven J (Iowa State University) [  email ]
Creator:Hall, Steven J (Iowa State University)
Creator:Huang, Wenjuan (Iowa State University)
Creator:Hammel, Kenneth E (USDA Forest Products Laboratory, and University of Wisconsin-Madison)

Data Entities
Data Table Name:
Hall_etal_Ecology_2020_Soil_Respiration_Isotope_Data.csv
Description:
Respiration, isotope composition, and carbon source partitioning data and incubations treatments
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/519/2/575956d067f73c5363be895c1c652f0e
Name:Hall_etal_Ecology_2020_Soil_Respiration_Isotope_Data.csv
Description:Respiration, isotope composition, and carbon source partitioning data and incubations treatments
Number of Records:1860
Number of Columns:20

Table Structure
Object Name:Hall_etal_Ecology_2020_Soil_Respiration_Isotope_Data.csv
Size:277923 bytes
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Number of Header Lines:1
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Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:Sample  
Soil  
Treatment  
Rep  
Day_of_experiment  
Sampling_interval_days  
Delta13C_CO2_permille  
CO2C_ug_g_d  
Percent_CO2_from_litter  
Percent_CO2_from_lignin  
Percent_CO2_from_soil  
Lignin_CO2C_mg_d  
Litter_CO2C_mg_d  
Soil_CO2C_mg_d  
CumCO2C_litter_mg  
CumCO2C_lignin_mg  
CumCO2C_soil_mg  
LitterC_percent_remaining  
LigninC_percent_remaining  
SoilC_percent_remaining  
Definition:Identification number of each experimental unitProvenance (state of origin) and taxonomy (“great group” in USDA classification) of each soil sample; further described in Supplementary Table 1 of Hall et al. (2020)Litter and lignin treatment that was applied; i.e., litter and natural abundance (12C) or 13C-labeled ligninreplicate numberDay of the incubation when each gas sample was collectedElapsed time between each successive gas sample collectionCarbon isotope ratio of CO2Mean flux of CO2-C produced on a daily basis between the previous and present gas sample collection, expressed on a dry soil mass basisPercent of observed CO2 derived from added litter (mixing model calculation)Percent of observed CO2 derived from added lignin (mixing model calculation)Percent of observed CO2 derived from soil organic carbon (mixing model calculation)Mean flux of CO2 derived from added lignin, produced on a daily basis between the previous and present gas sampleMean flux of CO2 derived from added litter, produced on a daily basis between the previous and present gas sampleMean flux of CO2 derived from soil organic matter, produced on a daily basis between the previous and present gas sampleCumulative flux of CO2 derived from added litterCumulative flux of CO2 derived from added ligninCumulative flux of CO2 derived from soil organic matterMass of added litter carbon remaining in percentMass of added lignin carbon remaining in percentMass of soil carbon remaining in percent
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Measurement Values Domain:
DefinitionIdentification number of each experimental unit
DefinitionProvenance (state of origin) and taxonomy (“great group” in USDA classification) of each soil sample; further described in Supplementary Table 1 of Hall et al. (2020)
DefinitionLitter and lignin treatment that was applied; i.e., litter and natural abundance (12C) or 13C-labeled lignin
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Max0.000189511 
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Max0.252323259 
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Max0.058033107 
Unitmilligram
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Max23.49467187 
Unitmilligram
Typereal
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Max0.040335797 
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Max14.34900044 
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Accuracy Report:                                        
Accuracy Assessment:                                        
Coverage:                                        
Methods:                                        

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
(No thesaurus)LUQ LTER, Luquillo, Macrosystems Biology, Soil Respiration, Litter Decomposition, Stable Isotopes, Nitrogen Mineralization, Soil Carbon, Soil Organic Matter, Soil pH, Lignin, Oxisol, Spodosol, Inceptisol, Alfisol, Mollisol, Entisol, Ultisol

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

We collected surface mineral soils (0–10 cm, surface litter removed) from 10 North American forests spanning a broad range of edaphic characteristics (Appendix 1: Table S1). Samples were stored field-moist in polyethylene bags at 4 degree C for several weeks prior to the incubation. Standing senesced above-ground stem and leaf tissue (litter) from Andropogon gerardii Vitman, a C4 grass, was collected near Ames, IA, USA (42.04 degreeN, -93.60 degreeW), dried at 65 degreeC, and ground to pass a 250 microm mesh. The litter had 41.3% C and 1.1% N by mass (C:N ratio of 37.5) and a delta13C value of -13.1permille.

13C-labeled and unlabeled lignins

We prepared synthetic guaiacyl lignin following Kirk & Brunow (1988) which contained either a 13C label (99 atom%) or natural abundance C at the Cbeta position of each C9 substructure. Lignins were fractionated by gel permeation chromatography to obtain a high-molecular-weight fraction ( greater than 1000 Da). The average labeled phenylpropane subunit has a molecular mass of 197, so the 13C label represented 13/197 of total lignin mass. Lignins were precipitated on the A. gerardii litter in a 1:21 mass ratio by dissolution in a 1:4 solution of acetone and water and evaporation in a fume hood. The lignin-litter mixture had a C:N ratio of 38.3. Further preparation and characterization details are given in Hall et al. (2015). Soil incubation experiments

Each soil was gently homogenized (not sieved) after coarse roots and rocks were removed, and replicate subsamples (1 g dry mass equivalent) were used for incubations. Two treatments were imposed with three replicates for each soil: amendment with 100 mg A. gerardii litter + natural abundance lignin, or with 100 mg A. gerardii litter + 13Cbeta-labeled lignin. This litter:soil ratio is representative of moderate litter inputs to surface soil (1 kg m-2). Samples were incubated in 50 ml centrifuge tubes placed inside 946-ml glass jars. Deionized water was added as needed to achieve field moisture capacity, determined for each soil by saturating and draining a subsample through filter paper. Jars were sealed with Viton gaskets and stainless steel lids with butyl rubber septa for headspace sampling/flushing. Jars were vented to the atmosphere with a needle and purged with humidified CO2-free air. Accumulated CO2 was periodically sampled using a syringe with needle and stopcock and jars were again purged with CO2-free air. Sampling intervals increased from weekly to biweekly to monthly to bimonthly over the two-year incubation (Fig. 2) to ensure sufficient CO2 accumulation for precise analysis. Concentrations of CO2 were always less than 5000 ppm, indicating that oxygen limitation did not occur (assuming an approximately equimolar ratio of headspace oxygen consumed to CO2 produced). We thus measured the entire cumulative production of CO2 from each sample. Mole fractions and delta13C values of CO2 were analyzed with a tunable diode laser (TGA200A, Campbell Scientific, Logan UT, USA; Hall et al., 2017). The long-term mean precision of delta13C was 0.33permille (1 SD) and the relative SD of CO2 mole fractions was 1.1%. Water was added gravimetrically at 2–4-month intervals to replenish vapor lost during headspace flushing.

Data analysis

We calculated CO2 production from bulk litter, lignin Cbeta, and SOC using isotope mixing models (Appendix 1: Table S1). We assessed temporal trends in C losses using generalized additive mixed models (GAMMs) fit to each C source in each soil, including an autoregressive error term to account for temporal autocorrelation, using the mgcv package (Wood 2017) version 1.8.28 in R version 3.6.0. Differences in total decomposition among C pools within a given soil were tested with ANOVA and Tukey’s HSD. We used vector analysis of lignin:litter and lignin:SOC decomposition ratios (Moorhead et al. 2016; Appendix 1: Figure S2) to test the tripartite relationships of lignin, litter, and SOC decomposition with predictor variables (Appendix 1: Table S1).

People and Organizations

Creators:
Individual: Steven J Hall
Organization:Iowa State University
Email Address:
stevenjh@iastate.edu
Id:https://orcid.org/0000-0002-7841-2019
Individual: Wenjuan Huang
Organization:Iowa State University
Email Address:
wjhuang@iastate.edu
Id:https://orcid.org/0000-0003-1038-1591
Individual: Kenneth E Hammel
Organization:USDA Forest Products Laboratory, and University of Wisconsin-Madison
Email Address:
kehammel@wisc.edu
Id:https://orcid.org/0000-0002-2935-5847
Contacts:
Individual: Steven J Hall
Organization:Iowa State University
Email Address:
stevenjh@iastate.edu
Id:https://orcid.org/0000-0002-7841-2019

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2017-02-01
End:
2019-02-28
Geographic Region:
Description:10 forest soils collected across North America
Bounding Coordinates:
Northern:  49.05Southern:  18.28
Western:  -125.68Eastern:  -65.79

Project

Parent Project Information:

Title:Collaborative Research: MSB-ECA: Resolving controls on lignin decomposition at the continental scale to reconcile classical and modern paradigms of soil organic matter.
Personnel:
Individual: Steven J Hall
Organization:0000-0002-7841-2019
Role:Principal Investigator
Funding: NSF DEB, Macrosystems Biology 1802745
Related Project:
Title:Luquillo CZO: The role of hot spots and hot moments in tropical landscape evolution and functioning of the critical zone
Personnel:
Individual: William H McDowell
Role:Principal Investigator
Funding: NSF EAR 1331841

Maintenance

Maintenance:
Description:completed
Frequency:
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EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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