Data Package Metadata   View Summary

LAGOS-US LOCUS Version 1.0

General Information
Data Package:
Local Identifier:edi.630.1
Title:LAGOS-US LOCUS Version 1.0
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package, LAGOS-US LOCUS v1.0, is one of the core data modules of the LAGOS-US platform that provides an extensible research-ready platform to study the 479,950 lakes and reservoirs larger than or equal to 1 ha in the conterminous US (48 states plus the District of Columbia). This data module contains information on the location, identifiers, and physical characteristics of lakes and their watersheds. The characteristics in this module include: variables that can be obtained from GIS data such as location and geometry; variables that can be derived using GIS processing such as lake watersheds and their geometry, lake glaciation history, and lake connectivity; and commonly used identifiers from GIS and other data products useful for linking with LAGOS-US. LOCUS is based on a snapshot of the high -resolution National Hydrography Dataset product available at the initiation of the project that provided the basis for locating, identifying, and characterizing the geometry of all lakes in LAGOS -US. The database design that supports the LAGOS-US research platform was created based on several important design features: lakes are the fundamental unit of consideration, all lakes in the spatial extent must be represented (above the minimum size), and most information is connected to individual lakes. The design is modular, interoperable (the modules can be used with each other), an d extensible (future database modules can be developed and used in the LAGOS - US research platform by others). Users are encouraged to use the other two core data modules that are part of the LAGOS- US platform: GEO (which includes geospatial ecological context at multiple spatial and temporal scales for lakes and their watersheds) and LIMNO (in situ lake surface-waterphysical, chemical, and biological measurements through time) that are each found in their own data packages

Publication Date:2020-11-13

People and Organizations
Contact:Smith, Nicole J (Michigan State University) [  email ]
Creator:Webster, Katherine E (Michigan State University)
Creator:Rodriguez, Lauren K (Michigan State University)
Creator:McCollough, Ian M (Michigan State University)
Creator:Soranno, Patricia A (Michigan State University)

Data Entities
Data Table Name:
lake_information.csv
Description:
A table that contains information on each LAGOS-US lake including lake-specific identifiers, zone identifiers for each spatial division containing the focal lake, and coordinate location.Observation-level flags provide additional information of value to users about focal lakes.
Data Table Name:
lake_characteristics.csv
Description:
Table of variables describing lake basin geometry, freshwater connectivity status, and glaciation history for each LAGOSUS lake.
Data Table Name:
lake_watersheds.csv
Description:
Table of variables describing identifiers for lake watersheds (WS) and network watersheds (NWS), as well as geometry metrics for these watersheds for LAGOS-US lakes. Observation-level flags provide additional information of value to users about these watersheds
Data Table Name:
lake_link.csv
Description:
Table that links LAGOS-US lake identifiers to identifiers from other lake-focuseddatasets in order to facilitate combining lake-related data among multiple data products.
Other Name:
gis_locus_v1.0_gdb.zip
Description:
supplemental file - with the Esri file geodatabase format
Other Name:
LAGOS_GIS_Toolbox-2.0-beta.zip
Description:
code/scripts
Other Name:
data_dictionary_locus.csv
Description:
data dictionary
Other Name:
source_table_locus.csv
Description:
source table
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/630/1/007ca4f5ec02bb5809fc661dcfa7a903
Name:lake_information.csv
Description:A table that contains information on each LAGOS-US lake including lake-specific identifiers, zone identifiers for each spatial division containing the focal lake, and coordinate location.Observation-level flags provide additional information of value to users about focal lakes.
Number of Records:479950
Number of Columns:34

Table Structure
Object Name:lake_information.csv
Size:144284946 bytes
Authentication:051db8ac4ba59716c0d02a0b3ff58a15 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:lagoslakeid  
lake_nhdid  
lake_nhdfcode  
lake_nhdftype  
lake_reachcode  
lake_namegnis  
lake_namelagos  
lake_onlandborder  
lake_ismultipart  
lake_missingws  
lake_shapeflag  
lake_lat_decdeg  
lake_lon_decdeg  
lake_elevation_m  
lake_centroidstate  
lake_states  
lake_county  
lake_countyfips  
lake_huc12  
buff100_zoneid  
buff500_zoneid  
ws_zoneid  
nws_zoneid  
hu12_zoneid  
hu8_zoneid  
hu4_zoneid  
county_zoneid  
state_zoneid  
epanutr_zoneid  
omernik3_zoneid  
wwf_zoneid  
mlra_zoneid  
bailey_zoneid  
neon_zoneid  
Definition:lakeidnhdidnhdfcodenhdftypelake_reachcodenamegnisnamelagosonlandborderismultipartmissingwsshapeflaglake_lat_decdeglake_lon_decdegelevation_mcentroidstatestatescountylake_countyfipslake_huc12buff100_zoneidbuff500_zoneidws_zoneidnws_zoneidhu12_zoneidhu8_zoneidhu4_zoneidcounty_zoneidstate_zoneidepanutr_zoneidomernik3_zoneidwwf_zoneidmlra_zoneidbailey_zoneidneon_zoneid
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Measurement Type:rationominalratioratiorationominalnominalnominalnominalnominalnominalratioratiorationominalnominalnominalratioratioratioratioratiorationominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominal
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Accuracy Assessment:                                                                    
Coverage:                                                                    
Methods:                                                                    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/630/1/fd7fe936d290a12bc6dbf5c41047849e
Name:lake_characteristics.csv
Description:Table of variables describing lake basin geometry, freshwater connectivity status, and glaciation history for each LAGOSUS lake.
Number of Records:479950
Number of Columns:24

Table Structure
Object Name:lake_characteristics.csv
Size:62334622 bytes
Authentication:7d5a8859d9d1ca70b75fbcd347b853d1 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
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Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:lagoslakeid  
lake_waterarea_ha  
lake_totalarea_ha  
lake_islandarea_ha  
lake_perimeter_m  
lake_islandperimeter_m  
lake_shorelinedevfactor  
lake_mbgconhull_length_m  
lake_mbgconhull_width_m  
lake_mbgconhull_orientation_deg  
lake_mbgrect_length_m  
lake_mbgrect_width_m  
lake_mbgrect_arearatio  
lake_meanwidth_m  
lake_connectivity_class  
lake_connectivity_fluctuates  
lake_connectivity_permanent  
lake_lakes1ha_upstream_ha  
lake_lakes4ha_upstream_ha  
lake_lakes10ha_upstream_ha  
lake_lakes1ha_upstream_n  
lake_lakes4ha_upstream_n  
lake_lakes10ha_upstream_n  
lake_glaciatedlatewisc  
Definition:lake idwater areatotal areaislan dareaperimeterisland perimetershore linedevfactormbgconhull_lengthmbgconhull_widthmbgconhull_orientationmbgrect_lengthmbgrect_widthmbgrectmean widthconnectivityconnectivityconnectivitylakes 1ha_upstreamlakes 4ha_upstreamlakes 10ha_upstreamlakes 1ha_upstreamlakes 4ha_upstreamlakes 10ha_upstreamglaciatedlatewisc
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Measurement Type:ratioratioratioratioratioratioratioratioratioratioratioratioratiorationominalnominalnominalratioratioratioratioratiorationominal
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Definitionhydrological connectivity
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Definitionhydrological connectivity
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Code Definition
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Code Definition
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Definitionhydrological connectivity
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Code Definition
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Definitionhydrological connectivity
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Code Definition
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Missing Value Code:                                                
Accuracy Report:                                                
Accuracy Assessment:                                                
Coverage:                                                
Methods:                                                

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/630/1/8bd86b94234a21a74991eca7bd9ab883
Name:lake_watersheds.csv
Description:Table of variables describing identifiers for lake watersheds (WS) and network watersheds (NWS), as well as geometry metrics for these watersheds for LAGOS-US lakes. Observation-level flags provide additional information of value to users about these watersheds
Number of Records:27137
Number of Columns:41

Table Structure
Object Name:lake_watersheds.csv
Size:6882434 bytes
Authentication:942a8cc20b18afdcc04fd5dec7a23e4f Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:nws_zoneid  
ws_zoneid  
lagoslakeid  
ws_subtype  
ws_equalsnws  
ws_onlandborder  
ws_oncoast  
ws_inusa_pct  
ws_includeshu4inlet  
ws_ismultipart  
ws_sliverflag  
nws_onlandborder  
nws_oncoast  
nws_inusa_pct  
nws_includeshu4inlet  
nws_ismultipart  
ws_states  
ws_focallakewaterarea_ha  
ws_area_ha  
ws_perimeter_m  
ws_lake_arearatio  
ws_mbgconhull_length_m  
ws_mbgconhull_width_m  
ws_mbgconhull_orientation_deg  
ws_meanwidth_m  
ws_lat_decdeg  
ws_lon_decdeg  
nws_states  
nws_focallakewaterarea_ha  
nws_area_ha  
nws_perimeter_m  
nws_lake_arearatio  
nws_mbgconhull_length_m  
nws_mbgconhull_width_m  
nws_mbgconhull_orientation_deg  
nws_meanwidth_m  
nws_lat_decdeg  
nws_lon_decdeg  
ws_sinkerror_flag  
ws_divergenceerror_flag  
nws_divergenceerror_flag  
Definition:zoneidzoneidlagoslakeidws_subtypews_equalsnwsws_onlandborderws_oncoastws_inusa_pctws_includeshu4inletws_ismultipartws_sliverflagnws_onlandbordernws_oncoastnws_inusa_pctnws_includeshu4inletnws_ismultipartws_statesws_focallakewaterarea_haws_area_haws_perimeter_mws_lake_arearatiows_mbgconhull_length_mws_mbgconhull_width_mws_mbgconhull_orientation_degws_meanwidth_mws_lat_decdegws_lon_decdegnws_statesnws_focallakewaterarea_hanws_area_hanws_perimeter_mnws_lake_arearationws_mbgconhull_length_mnws_mbgconhull_width_mnws_mbgconhull_orientation_degnws_meanwidth_mnws_lat_decdegnws_lon_decdegws_sinkerror_flagws_divergenceerror_flagnws_divergenceerror_flag
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Measurement Type:ratioratiorationominalnominalnominalnominalrationominalnominalnominalnominalnominalrationominalnominalnominalratioratioratioratioratioratioratioratioratiorationominalratioratioratioratioratioratioratioratioratiorationominalnominalnominal
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Missing Value Code:                                                                                  
Accuracy Report:                                                                                  
Accuracy Assessment:                                                                                  
Coverage:                                                                                  
Methods:                                                                                  

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/630/1/5488e333ce818597fa3dbfc9b4e0c131
Name:lake_link.csv
Description:Table that links LAGOS-US lake identifiers to identifiers from other lake-focuseddatasets in order to facilitate combining lake-related data among multiple data products.
Number of Records:937677
Number of Columns:30

Table Structure
Object Name:lake_link.csv
Size:232795831 bytes
Authentication:8a011faf787336cfbf3fd97a1d95b163 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:lagoslakeid  
lake_nhdid  
lake_reachcode  
lake_namegnis  
lake_namelagos  
lake_county  
lake_countyfips  
lake_lat_decdeg  
lake_lon_decdeg  
lake_centroidstate  
nhdhr_area_sqkm  
nhdhr_fdate  
nhdhr_gnisid  
lagosus_legacysiteid  
lagosus_legacysitelabel  
lagosus_legacyprogram  
wqp_monitoringlocationidentifier  
wqp_monitoringlocationname  
wqp_providername  
nhdplusv2_comid  
nhdplusv2_reachcode  
nhdplusv2_area_sqkm  
lagosne_lagoslakeid  
lagosne_legacysiteid  
nla2007_siteid  
nla2012_siteid  
nhdplusv2_lakes_n  
lagosne_lakes_n  
wqp_sites_n  
lagosus_legacyids_n  
Definition:lakeidnhdidlake_reachcodenamegnisnamelagoscountylake_countyfipslat_decdeglon_decdegcentroidstatearea_sqkmnhdhr_fdatenhdhr_gnisidus_legacysiteidus_legacysitelabelus_legacyprogramwqp_monitoringlocationidentifierwqp_monitoringlocationnamewqp_providernamenhdplusv2_comidnhdplusv2_reachcodenhdplusv2_area_sqkmlagosne_lagoslakeidlagosne_legacysiteidnla2007_siteidnla2012_siteidnhdplusv2_lakes_nlagosne_lakes_nwqp_sites_nlagosus_legacyids_n
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Measurement Type:rationominalrationominalnominalnominalratioratiorationominalratiodateTimerationominalnominalnominalnominalnominalnominalratioratioratiorationominalnominalnominalratioratioratioratio
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Missing Value Code:                                                            
Accuracy Report:                                                            
Accuracy Assessment:                                                            
Coverage:                                                            
Methods:                                                            

Non-Categorized Data Resource

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Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data (\"Data User\" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available \"as is.\" The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularylakes, ponds, watersheds, freshwater, limnology, geographic information systems, hydrography

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

This section provides a conceptual summary of the methods used to define the lake population, delineate the lake watersheds, and calculate all variables in the LAGOS - US LOCUS data tables. For further technical detail or to attempt to reproduce methods described in this section, users can consult the scripts themselves, published on the EDI repository as LAGOS GIS Toolbox (for convenience, a copy is also available at https://github.com/cont-limno/LAGOS_GIS_Toolbox).

The metadata tabledata_dictionary_locus contains a column, methods_tool, that can be used to identify the script (or ArcPy tool name) used to create the variable of interest, if one is available. (Methods implemented manually with no reproducible script are assigned the value “hand” in this table.) For example, if you are int erested in the variable lake_onlandborder, the methods_tool value “lagosGIS.lake_processing” indicates to look for the function named lake_processing within the lagosGIS Python module for more information.

Source datasets used with the methods can also be identified using the two metadata tables provided in the LOCUS module. The source_code of the associated source datasets are provided in data_dictionary_locus using the columns variable_source_code1 and variable_source_code2 (variables may have one or two source datasets). The short code (nhdhr, ned, tigerbound, etc.) provided here can be linked to a description and citation of the associated source dataset listed in source_table_locus by using a table join or by manually cross-referencing values.

Please be specific, include instrument descriptions, or point to a protocol online, if this is a data compilation please specify datasets used, preferably their DOI or URL plus general citation information

Detailed methods for the four data tables lake_information.csv, lake_link.csv, lake_characteristics.csv, and lake_watersheds.csv are found in the LAGOS - US LOCUS documentation guide: Smith, N.J., K.E. Webster, L. Rodriguez, I. M. McCullough, K.S . Cheruvelil, and P.A. Soranno. 2020.

LAGOS-US LOCUS v1.0: Module of location, identifiers, and physical characteristics of lakes and their watersheds in the conterminous U.S. Environmental Data Initiative. https://doi.org/XXXXXX.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Creators:
Individual: Katherine E Webster
Organization:Michigan State University
Email Address:
katherine.e.webster@gmail.com
Id:https://orcid.org/0000-0002-6009-0146
Individual: Lauren K Rodriguez
Organization:Michigan State University
Email Address:
rodi683@msu.edu
Individual: Ian M McCollough
Organization:Michigan State University
Email Address:
immccull@gmail.com
Id:https://orcid.org/0000-0002-6832-674X
Individual: Patricia A Soranno
Organization:Michigan State University
Email Address:
soranno@msu.edu
Id:https://orcid.org/0000-0003-1668-9271
Contacts:
Individual: Nicole J Smith
Organization:Michigan State University
Email Address:
smithn78@msu.edu
Id:https://orcid.org/0000-0003-2598-7115

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:
Geographic Region:
Description:Conterminous USA
Bounding Coordinates:
Northern:  49Southern:  25
Western:  -125Eastern:  -67

Project

Parent Project Information:

Title:Amacrosystems ecologyframeworkforcontinental-scalepredictionandunderstanding of lakes
Personnel:
Individual: Kendra S Cheruvelil
Organization:Michigan State University
Email Address:
ksc@msu.edu
Id:https://orcid.org/0000-0003-1880-2880
Role:Principal Investigator
Funding: USNationalScienceFoundation US NSFMacrosystemsBiologyProgram grants,DEB‐1638679;DEB‐1638550,DEB‐1638539,DEB‐1638554,USDA NationalInstitute ofFood andAgricultureHatch Project,Grant Number:176820

Maintenance

Maintenance:
Description:completed
Frequency:
Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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