Data Package Metadata   View Summary

Geochemical data from sediments and porewaters from ferruginous and meromictic Brownie Lake, Minnesota, U.S.A.

General Information
Data Package:
Local Identifier:edi.887.1
Title:Geochemical data from sediments and porewaters from ferruginous and meromictic Brownie Lake, Minnesota, U.S.A.
Alternate Identifier:DOI PLACE HOLDER
Abstract:

The dataset is comprised of analyses of sediment cores and sediment trap samples from ferruginous and meromictic Brownie Lake, Minnesota, U.S.A from January 2018 through February 2021. The dataset includes bulk sediment characteristics including water content, grain size, major and minor elements. Voltammetric scans were collected on porewaters and lake waters. Sediment porewaters were analyzed for pH, total alkalinity, ferrous iron, and dissolved sulfur species contents. Sediment samples were maintained under the exclusion of oxygen for analysis by synchrotron-based X-ray absorption spectroscopy.

Publication Date:2022-06-07
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2018-01-12
End:
2021-02-02

People and Organizations
Contact:Swanner, Elizabeth D. (Iowa State University) [  email ]
Creator:Swanner, Elizabeth D. (Iowa State University)
Creator:Islam, Raisa (Iowa State University)
Creator:Ledesma, Gabrielle (Iowa State University)
Creator:Wittkop, Chad (Minnesota State University)
Creator:Akam, Sajjad (Iowa State University)
Creator:Eitel, Eryn (California Institute of Technology)
Creator:Katsev, Sergei (University of Minnesota-Duluth)
Creator:Johnson, Ben (Iowa State University)
Creator:Poulton, Simon (University of Leeds)
Creator:Bray, Andy (University of Leeds)

Data Entities
Data Table Name:
BL_sediment_data
Description:
Tabular data produced from chemical and physical analysis of sediments from Brownie Lake.
Other Name:
Voltammogram File Series
Description:
Voltammogram File series within folders: 1. voltammograms [folder] 2.1 epilimnion_porewater [folder] 2.2 monimolimnion_porewater [folder] 2.3 water [folder] Folders contain .xml files of individual scans. File header contains analytical conditions. File names specifies sample type, depth in mm or m, and file and/or file replicate numbers. Voltammograms in .xml format.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/887/1/bd838f33f857d59697ec4e9f1a20eb91
Name:BL_sediment_data
Description:Tabular data produced from chemical and physical analysis of sediments from Brownie Lake.
Number of Records:904
Number of Columns:11

Table Structure
Object Name:BL_sediments_EDI_20220606.csv
Size:74376 bytes
Authentication:f4d9e9a14fbbfa588f7d96a797676a69 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:Sample Type  
Date  
Depth  
Method  
Analyte  
Unit  
Value  
Flag  
QC1  
QC2  
Note  
Definition:Type of sample data was determined fromYear (20XX), month (01-12), and day of month (01-31)Vertical depth from surface of the lake for sediment trap samples; vertical depth from top of core for sediment cores, with depth indicating lowest depth of homogenized samplesInstrument or analytical techniqueParameter being measuredUnit of measureNumerical valueSamples that were below stated detection limits. Detection limits are described in the methods and QC column.Quality Control criteria; number such as detection limit, standard deviation, analytical uncertainty, etc. QC criteria for each analysis are defined in the Methods.Quality Control criteria; number such as detection limit, standard deviation, analytical uncertainty, etc. QC criteria for each analysis are defined in the Methods.Comments
Storage Type:string  
date  
float  
string  
string  
string  
float  
string  
float  
float  
string  
Measurement Type:nominaldateTimerationominalnominalnominalrationominalratiorationominal
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeFC
Definitionfreeze core
Source
Code Definition
CodeGC
Definitiongravity core
Source
Code Definition
CodeST
Definitionsediment trap
Source
FormatYYYY-MM-DD
Precision
Unitmeter
Typereal
Min0.01 
Max10.5 
DefinitionInstrument or analytical technique
DefinitionParameter being measured
DefinitionUnit of measure
Unitdimensionless
Typereal
Min-7.76 
Max428 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBDL
Definitionbelow detection limit
Source
Unitdimensionless
Typereal
Min0.002 
Max32000 
Unitdimensionless
Typereal
Min0.0014 
Max400 
DefinitionComments
Missing Value Code:            
Code-99999
Explmissing value
       
Accuracy Report:                      
Accuracy Assessment:                      
Coverage:                      
Methods:                      

Non-Categorized Data Resource

Name:Voltammogram File Series
Entity Type:unknown
Description:Voltammogram File series within folders: 1. voltammograms [folder] 2.1 epilimnion_porewater [folder] 2.2 monimolimnion_porewater [folder] 2.3 water [folder] Folders contain .xml files of individual scans. File header contains analytical conditions. File names specifies sample type, depth in mm or m, and file and/or file replicate numbers. Voltammograms in .xml format.
Physical Structure Description:
Object Name:voltammograms.zip
Size:8896629 bytes
Authentication:8c250749f278f8864ce6f7351841801e Calculated By MD5
Externally Defined Format:
Format Name:application/zip
Data:https://pasta-s.lternet.edu/package/data/eml/edi/887/1/a08251abe3a2dcbc38d15d4a66ebdbaa

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
(No thesaurus)Geology
LTER Controlled Vocabularybiogeochemistry, limnology, chemical properties

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Sampling Methods

Sediment traps (ST) were constructed by hollowing the caps of 1L HDPE bottles to accommodate rigid 30-cm long tubes of 4.75-cm diameter. The tubes were secured silicone glue and the caps were screwed onto acid-washed 1L HDPE bottles. Traps were immobilized using zip ties on a rope that was attached to an anchor at the bottom and floating buoy at the top. Upon retrieval the sediment traps caps were replaced while underwater and bottles were immediately brought into an anoxic N2-filled portable glove bag on the boat. The trap contents transferred into 1L acid-washed glass serum bottles that were sealed with a butyl rubber stopper. The sediment trap samples were stored in the dark at 4C. Inside a 100% N2 glovebox (Vacuum Atmospheres), the sediment trap material was transferred into acid-washed and stoppered glass serum bottles that were centrifuged at 1700 rpm for 10 minutes to concentrate solids. The solids were then washed three times with anoxic ultrapure water to remove soluble salts and dried under a vacuum in the glovebox.

A 60-cm frozen core was collected from Brownie Lake on January 12, 2018, at a water depth of 13 m using a freeze corer (Shapiro 1958) rented from the National Lacustrine Core Facility at the University of Minnesota. The core was transported on dry ice to the lab, where the surface of the slab was smoothed using a wood planer and cut into 2.5 cm-wide vertical strips on a band saw while cooled by dry ice (Harrison et al. 2015). The strips were shipped to Iowa State University on dry ice and stored at -80C freezer until further processing.

Gravity cores (GC) were collected using a National Lakes Assessment gravity corer (Aquatic Research Instruments). The core was extruded on the same day as collection, either in the field or after transport to the lab after sealing with a rubber stopper for transport. In August 2018, the core was extruded in air. In October 2019 and February 2021, the core was extruded inside a disposable N2-filled glovebag. Sediment samples were placed into acid-washed vessels for porewater extraction inside a disposable N2-filled glovebag using Rhizons of 2.5 mm diameter and pore size of 0.15 µm (Rhizosphere Research Products). Porewaters were collected into 20 mL syringes, with suction created by wedging open the syringe connected to the Rhizon. In August 2018 porewaters were analyzed immediately or preserved for later analysis. In February 2021 the wet sediments were stored at a -80C until extraction inside a 100% N2 glovebox. The remaining sediments were washed three times with ultrapure water to remove soluble salts and dried under a vacuum in the glovebox.

Analytical Methods

Lake water and porewaters of intact gravity cores were analyzed using Hg-plated gold microelectrodes and a DLK-70 potentiostat (AIS; Analytical Instrument Systems). One core was collected from beneath the epilimnion and the other from beneath the monimolimnion. Lake water samples were pumped to a boat from target depths using a groundwater pump (Lambrecht et al. 2018) and into a homemade flow-through cell with no headspace that was constant flushed at a low flow rate during analysis. Porewater profiles were collected using an AIS micromanipulator.

Scans were collected optimized for analytes in the water samples: 1) with oxygen (O2), cathodic scan at 200 mV/S, 2) without hydrogen sulfide, cathodic scan at 200 mV/s, conditioning at -0.1 V for 10 s; 3) with hydrogen sulfide, cathodic scan at 200 mV/s, conditioning at -0.9 V for 10 s conditioning at -0.1 V for 10 s; 4) abundant hydrogen sulfide anodic square wave (ASW) from -1.5 to -0.1 V and a step height of 50 mV with no conditioning.

Porewaters from the August 2018 core were chemically fixed or analyzed immediately after extraction (Xiong et al. 2019). pH was measured with a calibrated Mettler Toledo AG 8603. Precision is 0.01 (QC1). The ferrozine reagent was used bind and quantify dissolved ferrous iron (Fe2+) (Stookey 1970). Dissolved sulfide was determined using the Cline assay after fixing with 10 mM zinc acetate (Cline 1969). Dissolved phosphate was measured with the molybdate blue method (Murphy and Riley 1962). Porewater samples for DIC and δ13C-DIC were injected into evacuated, He-flushed exetainers containing 1 mL of concentrated phosphoric acid. Samples were analyzed at the University of California-Davis Stable Isotope Facility and are reported as δ13C in permil (‰) relative to Vienna PeeDee Belemnite (VPDB) with a long-term standard deviation of 0.1 ‰ (QC1).

Porewater measurements of the February 2021 gravity core were made inside a 100% N2 glovebox. pH was measured within 30 minutes of extraction using a Mettler Toledo SevenCompact pH meter calibrated with standards of pH 4, 7, and 10. Precision is 0.01 (QC1).

Total alkalinity as CaCO3 was determined e using Hach TNT Total Alkalinity test kits and a Hach DR1900 spectrophotometer within 1 hour of extraction. The detection range was 25 to 400 mg/L CaCO3 (QC1 and QC2). If samples were above the detection range they were and measured again, with the result from the diluted sample reported.

Particle size analysis of gravity cored sediments was determined with a Malvern Master Sizer 3000 coupled with a Hydro MV dispersion unit for controlled dispersion of the sediment grains. Samples of ~0.045 g were optimal for the required 3-5% obscuration level on the instrument. Grain sizes were determined using Gradistat version 8.0. Grain size QC1 indicate the minimum size in microns of particles in the size bin. The notes indicate the classification of the sample.

Elemental analysis was performed on sediments fumigated with hydrochloric acid using a Costech Elemental Analyzer at the Large Lakes Observatory, University of Minnesota, Duluth using a BBOT standard.

Elemental abundances were determined by X-ray Fluorescence (XRF) at Minnesota State University, Mankato on a Rigaku Supermini 200 under 100% He with Pd anode X-rays at 50 kV and 4.0 mA. Samples were freeze dried and homogenized and powdered by mortar and pestle. Powdered samples of 0.5-3 g and placed in a polyethylene cup with a transparent Etnom film on the bottom. Elemental abundances produced from XRF were normalized as anhydrous oxides. Precision was calculated by the long-term standard deviation of replicate analyses of the standards and duplicates, and accuracy was determined by comparison of the standard values with United States Geological Survey (USGS) values for the same standards. Accuracy is reported as QC1 and used as the detection limit. Precision is reported as QC2.

Acid volatile sulfur (AVS) and chromium reducible sulfur (CRS) were sequentially extracted from the February 2021 gravity core using a modified method from (Canfield et al. 1986; Fossing and Jørgensen 1989). An average 4 g of homogenized samples at 2 cm resolution from the top 30 cm of the sediment gravity core collected in February 2021 were used for the analysis. The samples were dried in the vacuum chamber of an anoxic glovebox (100% N2) at room temperature. AVS in the samples were converted to H2S gas by reacting the samples with 10 ml ethanol and 25 ml of 6M HCl. The evolved H2S gas was carried via N2 to an AgNO3-NH4OH trap solution, where it was quantitatively converted to silver sulfide (Ag2S). The residual samples were reacted with 25 ml of chromium chloride (1 M CrCl3.6H20 in 0.5 M HCl) solution for CRS extraction and were also converted to Ag2S using the same steps, using a fresh batch of AgNO3-NH4OH trap solution. The Ag2S precipitates were recovered on a 0.45 μm polycarbonate membrane filter using vacuum filtration before being dried at 60°C and weighed to determine the AVS and CRS weight percent using the stoichiometries of FeS and FeS2, respectively.

δ34SAVS and δ34SCRS values were measured on the AVS- and CRS-extracted material from the February 2021 gravity core using a Thermo Delta Plus IRMS connected to an Isolink EA via a Conflo IV interface in the Earth System Evolution Lab, Iowa State University. The δ34S values are reported with reference to Vienna-Canyon Diablo Troilite (VCDT). Precision of δ34S measurements was 0.5‰ and is reported as QC1.

Bulk X-ray absorption near-edge structure (XANES) spectroscopy at the S, Mn, and Fe k-edges was performed at beamline 9-BM at the Advanced Photon Source (APS) in a helium-filled sample chamber. Analyses were performed in July and October 2020 on sediment trap material and gravity core material from October 2019. Samples were analyzed using a Vortex four-element silicon drift detector. For each sample, 15 to 20 spectra were collected on the S k-edge, 3-4 scans on the Fe k-edge, and 5-10 scans on the Mn k-edge.

Samples of the January 2018 freeze core, October 2019 gravity core, and 2019 sediment traps were mapped using XRF at beamline 13-IDE at 2500 eV, 4500 eV and 7200 eV with a frequency of 1-2 MHz and a 50 µm aluminum filter. Analyses were performed in August 2019 and October 2020. Samples were stored, transported, and handled in a nitrogen atmosphere and analyzed in a He-purged bag. Multi-energy maps of <1x1 mm were collected at energies 2469, 2470, 2471 and 2472 eV and used to visualize the distribution of sulfur species. Spots of overlap between Fe and S were chosen for microscale XANES in fluorescence mode at the S, Mn, and Fe K-edges using a Canberra SXD-7 7-element silicon drift detector.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Elizabeth D. Swanner
Organization:Iowa State University
Email Address:
eswanner@iastate.edu
Id:https://orcid.org/0000-0001-9507-0893
Individual: Raisa Islam
Organization:Iowa State University
Email Address:
rislam@iastate.edu
Id:https://orcid.org/0000-0001-9736-0245
Individual: Gabrielle Ledesma
Organization:Iowa State University
Email Address:
gledesma@iastate.edu
Id:https://orcid.org/0000-0002-3328-9344
Individual: Chad Wittkop
Organization:Minnesota State University
Email Address:
Chad.wittkop@mnsu.edu
Id:https://orcid.org/0000-0002-7238-3827
Individual: Sajjad Akam
Organization:Iowa State University
Email Address:
sajjad@iastate.edu
Id:https://orcid.org/0000-0002-6089-0370
Individual: Eryn Eitel
Organization:California Institute of Technology
Email Address:
eeitel@caltech.edu
Individual: Sergei Katsev
Organization:University of Minnesota-Duluth
Email Address:
skatsev@d.umn.edu
Id:https://orcid.org/0000-0001-8577-4299
Individual: Ben Johnson
Organization:Iowa State University
Email Address:
bwj@iastate.edu
Individual: Simon Poulton
Organization:University of Leeds
Email Address:
S.Poulton@leeds.ac.uk
Individual: Andy Bray
Organization:University of Leeds
Email Address:
A.W.Bray@leeds.ad.uk
Contacts:
Individual: Elizabeth D. Swanner
Organization:Iowa State University
Email Address:
eswanner@iastate.edu
Id:https://orcid.org/0000-0001-9507-0893

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2018-01-12
End:
2021-02-02
Geographic Region:
Description:Brownie Lake, Minnesota, USA
Bounding Coordinates:
Northern:  44.969008Southern:  44.965969
Western:  -93.325961Eastern:  -93.322528

Project

Parent Project Information:

Title:Biosignatures of coupled iron and carbon cycling in ferruginous lakes
Personnel:
Individual: Elizabeth D. Swanner
Organization:Iowa State University
Email Address:
eswanner@iastate.edu
Id:https://orcid.org/0000-0001-9507-0893
Role:Principal Investigator
Funding: National Science Foundation EAR - 1660691
Related Project:
Title:Biosignatures of coupled iron and carbon cycling in ferruginous lakes
Personnel:
Individual: Chad Wittkop
Organization:Minnesota State University
Email Address:
Chad.wittkop@mnsu.edu
Id:https://orcid.org/0000-0002-7238-3827
Role:Principal Investigator
Funding: National Science Foundation EAR - 1660761
Related Project:
Title:Biosignatures of coupled iron and carbon cycling in ferruginous lakes
Personnel:
Individual: Sergei Katsev
Organization:University of Minnesota-Duluth
Email Address:
skatsev@d.umn.edu
Id:https://orcid.org/0000-0001-8577-4299
Role:Principal Investigator
Funding: National Science Foundation EAR - 1660873
Related Project:
Title:Determining the mechanism(s) of sedimentary pyrite formation from anoxic (pore)waters
Personnel:
Individual: Elizabeth D. Swanner
Organization:Iowa State University
Email Address:
eswanner@iastate.edu
Id:https://orcid.org/0000-0001-9507-0893
Role:Principal Investigator
Funding: American Chemical Society, Petroleum Research Fund 59933-DNI2
Related Project:
Title:Down-core mapping of sedimentary diagenesis within anoxic lake sediments
Personnel:
Individual: Elizabeth D. Swanner
Organization:Iowa State University
Email Address:
eswanner@iastate.edu
Id:https://orcid.org/0000-0001-9507-0893
Role:Principal Investigator
Funding: Advanced Photon Source GUP-60206
Related Project:
Title:Tracking aquatic redox conditions and biogeochemistry through Fe, Mn and S mineral (trans)formations
Personnel:
Individual: Elizabeth D. Swanner
Organization:Iowa State University
Email Address:
eswanner@iastate.edu
Id:https://orcid.org/0000-0001-9507-0893
Role:Principal Investigator
Funding: Advanced Photon Source GUP-67373
Related Project:
Title:CAREER: Quantifying the extent and biogeochemical impact of modern ferruginous lakes
Personnel:
Individual: Elizabeth D. Swanner
Organization:Iowa State University
Email Address:
eswanner@iastate.edu
Id:https://orcid.org/0000-0001-9507-0893
Role:Principal Investigator
Funding: National Science Foundation 1944946

Maintenance

Maintenance:
Description:ongoing
Frequency:
Other Metadata

Additional Metadata

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