Data Package Metadata   View Summary

Plant community data at water sources, Mpala Research Centre, Kenya (2015-2017)

General Information
Data Package:
Local Identifier:edi.9.0
Title:Plant community data at water sources, Mpala Research Centre, Kenya (2015-2017)
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Data package contains four datasets of plant measurements taken at Mpala Research Centre, Laikipia County, Kenya from November 2015-September 2017. Additional code for data analysis is also provided as part of the publication "Savanna plant communities at water sources vary across abiotic gradients".

Publication Date:2020-04-22

Time Period
Begin:
2015-11-02
End:
2017-11-21

People and Organizations
Contact:Titcomb, Georgia C (University of California, Santa Barbara) [  email ]
Creator:Titcomb, Georgia C (University of California, Santa Barbara)
Associate:Titcomb, Georgia C (University of California, Santa Barbara, Owner)
Associate:Amooni, Godfrey (Mpala Research Centre, Field Assistant)
Associate:Mantas, John N (Mpala Research Centre, Field Assistant)

Data Entities
Data Table Name:
Count data
Description:
Cover data for broad plant groups
Data Table Name:
Diversity data
Description:
Data for diversity analyses
Data Table Name:
Species data
Description:
Data for species-specific analyses
Data Table Name:
Height data
Description:
Vegetation height data for all species
Other Name:
Count analysis
Description:
R code for count analyses
Other Name:
Diversity analysis
Description:
R code for diversity analyses
Other Name:
Height analysis
Description:
R code for height analyses
Other Name:
Species analysis
Description:
R code for species analyses
Other Name:
Phylogenetic tree
Description:
Phylogenetic tree used for diversity analyses
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/9/0/7cecfec580b7fdefb50eb42561671b34
Name:Count data
Description:Cover data for broad plant groups
Number of Records:804
Number of Columns:12

Table Structure
Object Name:COUNT_DATA_2020.csv
Size:70489 bytes
Authentication:b22653a7eb3a0c61c1301b06c4d654cf Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:Date  
Distance  
Season  
Site  
Rain30  
MAP  
Soil  
Plant_group  
Water  
Control  
Delta  
Delta_pct  
Definition:Date of surveyOutward distance from center of survey areaSampling seasonLocationPrior 30-day rainfall aggregateMean annual precipitationSoil typePlant groupCover at waterCover at controlDifference in coverDifference in cover (percent)
Storage Type:date  
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float  
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float  
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Measurement Type:dateTimenominalnominalnominalratiorationominalnominalratioratioratioratio
Measurement Values Domain:
FormatYYYY-MM-DD
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0-45
Definition0-45 meter band from center of sampling area
Source
Code Definition
Code50-95
Definition50-95 meter band from center of sampling area
Source
Code Definition
Code100-145
Definition100-145 meter band from center of sampling area
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
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DefinitionNovember 2015
Source
Code Definition
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DefinitionFebruary 2016
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Code Definition
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DefinitionAugust 2016
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DefinitionSeptember 2017
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UnitmillimetersPerYear
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DefinitionBlack silt/clay soil
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Code Definition
CodeRed
DefinitionRed sand soil
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Codegcover
DefinitionGrass cover
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Code Definition
Codefcover
DefinitionForb cover
Source
Code Definition
Codetcover
DefinitionTree cover
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Code Definition
Codebcover
DefinitionBare ground
Source
Unitdimensionless
Typereal
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Max0.95 
Unitdimensionless
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Max0.994333333 
Unitdimensionless
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Max72.333 
Missing Value Code:
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Accuracy Report:                        
Accuracy Assessment:                        
Coverage:                        
Methods:                        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/9/0/f0090ad3be4cf9fb9d6599c15722b176
Name:Diversity data
Description:Data for diversity analyses
Number of Records:41184
Number of Columns:12

Table Structure
Object Name:DIVERSITY_DATA_2020.csv
Size:3449566 bytes
Authentication:1b8580e50b551b2282a30f74aa07cb4d Calculated By MD5
Text Format:
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Record Delimiter:\r\n
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Field Delimiter:,

Table Column Descriptions
 
Column Name:Date  
commID  
Distance  
Season  
Site  
Perim  
Treatment  
Rain30  
MAP  
Soil  
Species  
Count  
Definition:Date of surveyCommunity ID numberOutward distance from center of survey areaSampling seasonLocationPerimeter of water sourceWater source or control site designationPrior 30-day rainfall aggregateMean annual precipitationSoil typePlant speciesCount of pin hits
Storage Type:date  
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Measurement Type:dateTimenominalnominalnominalnominalrationominalratiorationominalnominalratio
Measurement Values Domain:
FormatYYYY-MM-DD
Precision
DefinitionCommunity ID number
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0-45
Definition0-45 meter band from center of sampling area
Source
Code Definition
Code100-145
Definition100-145 meter band from center of sampling area
Source
Code Definition
Code50-95
Definition50-95 meter band from center of sampling area
Source
Allowed Values and Definitions
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DefinitionAugust 2016
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DefinitionFebruary 2016
Source
Code Definition
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DefinitionNovember 2015
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Code Definition
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DefinitionSeptember 2017
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DefinitionLocation
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Typereal
Min116.8 
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DefinitionControl site
Source
Code Definition
CodeWH
DefinitionWater source
Source
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UnitmillimetersPerYear
Typenatural
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Allowed Values and Definitions
Enumerated Domain 
Code Definition
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DefinitionBlack silt/clay
Source
Code Definition
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DefinitionRed sand
Source
DefinitionPlant species
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Explno data
Accuracy Report:                        
Accuracy Assessment:                        
Coverage:                        
Methods:                        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/9/0/67227c9f56873531b277bd9f291bc826
Name:Species data
Description:Data for species-specific analyses
Number of Records:16080
Number of Columns:8

Table Structure
Object Name:SPECIES_DATA_2020.csv
Size:856060 bytes
Authentication:ac6f3bfcdf6cc4dc3b420378f9d3134a Calculated By MD5
Text Format:
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Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:Date  
Season  
Treatment  
Site  
Soil  
Distance  
Species  
Mean_Count  
Definition:DateSampling seasonWater source or control site designationLocationSoil typeOutward distance from center of sampling areaPlant speciesMean count of species within distance bin
Storage Type:date  
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Measurement Type:dateTimenominalnominalnominalnominalnominalnominalratio
Measurement Values Domain:
FormatYYYY-MM-DD
Precision
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Enumerated Domain 
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Codea16
DefinitionAugust 2016
Source
Code Definition
Codef16
DefinitionFebruary 2016
Source
Code Definition
Coden15
DefinitionNovember 2015
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Code Definition
Codes17
DefinitionSeptember 2017
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeCONT
DefinitionControl site
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Code Definition
CodeWH
DefinitionWater source
Source
DefinitionLocation
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBlack
DefinitionBlack silt/clay
Source
Code Definition
CodeRed
DefinitionRed sand
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0-45
Definition0-45 meter band from center of sampling area
Source
Code Definition
Code100-145
Definition100-145 meter band from center of sampling area
Source
Code Definition
Code50-95
Definition50-95 meter band from center of sampling area
Source
DefinitionPlant species
Unitdimensionless
Typereal
Min
Max83.33 
Missing Value Code:
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Explno data
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Explno data
Accuracy Report:                
Accuracy Assessment:                
Coverage:                
Methods:                

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/9/0/2b407c2fc1015888f8035d8225ec9cca
Name:Height data
Description:Vegetation height data for all species
Number of Records:24924
Number of Columns:122

Table Structure
Object Name:HEIGHT_DATA_2020.csv
Size:6682977 bytes
Authentication:c302543361d68dfd7bf754937a078d15 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:Season  
Date  
Site  
Treatment  
Transect  
Distance  
ACAL  
ACBR  
ACCT  
ACDR  
ACET  
ACGE  
ACH  
ACME  
ACNI  
ACX  
ACTO  
AER  
AM  
ARI  
ASH  
ASP  
ASPA  
BA  
BAL  
BOS  
BOT  
BRA  
CAD  
CAR  
CLL  
CAS  
CC  
CD  
CH  
CHL  
COM  
CON  
COPH  
CP  
CR  
CUC  
CY  
CYM  
CYOR  
DIG  
DIN  
DIS  
ECH  
ED  
EM  
ES  
ET  
ER  
EUPH  
EVO  
GC  
GR  
HAP  
HG  
HSP  
INSP  
IS  
JSP  
KAL  
KL  
LE  
LEU  
LI  
LIL  
LJ  
MEL  
MEX  
MIS  
MK  
MON  
MSA  
OP  
OS  
PAM  
PAV  
PEL  
PHY  
PL  
PM  
POL  
POR  
PP  
PS  
PYR  
SP  
RHAM  
RHI  
RHNA  
RHY  
SCU  
SEY  
SF  
SH  
SI  
SS  
TB  
THT  
TM  
TN  
COC  
EMI  
PST  
TRT  
ZAN  
ACHO  
DAT  
HH  
LC  
LEO  
POG  
QUI  
SA  
SV  
COR  
WATER  
UNK  
Definition:Sampling seasonDateLocationWater source or control site designationTransect IDOutward distance from center of sampling areaAcalypha heightAcacia (Senegalia) brevispica heightAcacia sp heightAcacia (Vachellia) drepanolobium heightAcacia (Vachellia) etbaica heightAcacia (Vachellia) gerrardii heightAchyranthes sp heightAcacia (Senegalia) mellifera heightAcacia (Vachellia) nilotica heightAcacia (Vachellia) xanthophloea heightAcacia (Vachellia) tortilis heightAerva sp heightAmaranthus sp heightAristida sp heightFraxinus sp heightAspilia sp heightAsparagus sp heightBarleria sp heightBalanites sp heightBoscia sp heightBothriochloa sp heightBrachiaria sp heightCadaba sp heightCarrisa spinarum heightCaralluma sp heightCassia sp heightCenchrus ciliarus heightCynodon dactylon heightChenopodium sp heightChloris sp heightCommelina sp heightConyza sp heightCommiphora sp heightCynodon plectostachyus heightCroton sp heightCucumis sp heightCyperus sp heightCymbopogon sp heightCyathula orthacantha heightDigitaria sp heightDinebra sp heightDyschoriste sp heightEchinochloa sp heightEuclea divorum heightEnteropogon macrostachyus heightEragrostris superba heightEragrostris tenuifolia heightEragrostris racemosa heightEuphorbia sp heightEvolvulus sp heightGutenbergia cordifolia heightGrewia tenax heightHarpachne schimperi heightHelichrysum glumaceum heightHibiscus sp heightIndigofera sp heightIpomea sinensis heightJusticia sp heightKalanchoe sp heightKleinia sp heightLycium europeum heightLeucas sp heightLintonia nutans heightLilium sp heightLippia javanica heightMelhania sp heightTagetes lemmonii heightMisopates sp heightMicrochloa kunthii heightMonechma debile heightMonsonia sp heightOpuntia sp. heightOxygonum sp heightPanicum maximum heightPavonia sp heightPelargonium sp heightPhyllanthus sp heightPlectranthus sp heightPennisetum mezianum heightPolygala heightPortulaca sp heightPsidia punctata heightPennisetum stramineum heightPyrostria sp heightSporobolus pyrimidalis heightRhamnus studdo heightRhinacanthus sp heightRhus natalensis heightRhyncosia sp heightScutia myrtina heightAcacia (Vachellia) seyal heightSporobolus festivus heightSchkuhria sp heightSolanum incanum heightSetaria sphacelata heightTragus berteronianus heightThemeda triandra heightTagetes minuta heightTeclea nobilis heightCorchorus sp heightEmilia sp heightPolystachya sp heightTribulus terrestris heightZanthoxylum chalybeum heightAcacia (Vachellia) hockii heightDatura sp heightHyparrhenia Hirta heightLantana sp heightLeonotis sp heightPolygonum sp heightQuibentia heightSporobolus africana heightSetaria verticellata heightCordia africana heightWater on transect?Unknown species
Storage Type:string  
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Measurement Type:nominaldateTimenominalnominalnominalratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
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DefinitionAugust 2016
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Accuracy Report:                                                                                                                                                                                                                                                    
Accuracy Assessment:                                                                                                                                                                                                                                                    
Coverage:                                                                                                                                                                                                                                                    
Methods:                                                                                                                                                                                                                                                    

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Data Package Usage Rights

This data package is released to the "public domain" under Creative Commons CC0 1.0 "No Rights Reserved" (see: https://creativecommons.org/publicdomain/zero/1.0/). It is considered professional etiquette to provide attribution of the original work if this data package is shared in whole or by individual components. A generic citation is provided for this data package on the website https://portal.edirepository.org (herein "website") in the summary metadata page. Communication (and collaboration) with the creators of this data package is recommended to prevent duplicate research or publication. This data package (and its components) is made available "as is" and with no warranty of accuracy or fitness for use. The creators of this data package and the website shall not be liable for any damages resulting from misinterpretation or misuse of the data package or its components. Periodic updates of this data package may be available from the website. Thank you.

Keywords

By Thesaurus:
(No thesaurus)Mpala Research Centre, plant-herbivore interactions, water sources, phylogenetic diversity, abiotic effects
LTER Controlled Vocabularyspecies richness, grazing, vegetation

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

We conducted four seasons of plant surveys at 17 water sources at Mpala Research Centre. Sites spanned a range of abiotic conditions, including variable soil types, mean annual precipitation, and prior rainfall. In the study, we analyse the differing effects of herbivore impacts on vegetation around water as a function of abiotic context. Detailed methods are provided in the parent publication 'Savanna plant communities at water sources vary across abiotic gradients'.

People and Organizations

Creators:
Individual: Georgia C Titcomb
Organization:University of California, Santa Barbara
Email Address:
georgiatitcomb@gmail.com
Id:https://orcid.org/0000-0002-2206-1125
Contacts:
Individual: Georgia C Titcomb
Organization:University of California, Santa Barbara
Email Address:
georgiatitcomb@gmail.com
Id:https://orcid.org/0000-0002-2206-1125
Associated Parties:
Individual: Georgia C Titcomb
Organization:University of California, Santa Barbara
Email Address:
georgiatitcomb@gmail.com
Id:https://orcid.org/0000-0002-2206-1125
Role:Owner
Individual: Godfrey Amooni
Organization:Mpala Research Centre
Role:Field Assistant
Individual: John N Mantas
Organization:Mpala Research Centre
Role:Field Assistant

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2015-11-02
End:
2017-11-21
Geographic Region:
Description:Mpala Research Centre
Bounding Coordinates:
Northern:  0.519960Southern:  0.269218
Western:  36.823750Eastern:  36.922153

Project

Parent Project Information:

Title:Savanna plant communities at water sources vary across abiotic gradients
Personnel:
Individual: Hillary S Young
Organization:University of California, Santa Barbara
Email Address:
hillary.young@lifesci.ucsb.edu
Id:https://orcid.org/0000-0003-0449-8582
Role:Principal Investigator
Funding: National Science Foundation DEB-1556786

Maintenance

Maintenance:
Description:complete
Frequency:
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'millimetersPerYear'
        |     |     |     |  \___attribute 'multiplierToSI' = '0.1'
        |     |     |     |  \___attribute 'name' = 'millimetersPerYear'
        |     |     |     |  \___attribute 'parentSI' = 'centimeterPerYear'
        |     |     |     |  \___attribute 'unitType' = 'rate'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'average millimeters of rainfall per year'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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