Data Package Metadata   View Summary

Surface and SubSurface Soil Organic Matter Processing following Hurricane Harvey, Texas, USA

General Information
Data Package:
Local Identifier:edi.925.4
Title:Surface and SubSurface Soil Organic Matter Processing following Hurricane Harvey, Texas, USA
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Coastal wetland plant identity and cover is changing, as many subtropical salt marshes dominated by low-stature herbaceous species transition to woody mangroves. How changes in dominant plant species affect carbon processing in coastal wetlands during storms is uncertain. We experimentally manipulated patch-scale (3 × 3 m) cover of black mangroves (Avicennia germinans) and saltmarsh plants (e.g., Spartina alterniflora, Batis maritima) in fringe and interior locations of ten plots (24 × 42 m) to create a gradient in mangrove cover in coastal Texas, USA. Hurricane Harvey made direct landfall over our site on 25 August 2017. To test how mangrove cover affected carbon retention after the storm, we measured litter breakdown rates (k) of A. germinans and S. alterniflora in surface soils and fast- and slow-decomposing standard litter substrates (green and red tea, respectively) in subsurface soils (15 cm depth). Soil temperatures were lower in mangrove than marsh patches, and prior microclimate measurements showed non-linear increases in air and soil temperatures with increasing mangrove cover (highest temperatures at intermediate % cover). Litter breakdown rates (k) were 2 higher in surface than in subsurface soils. Avicennia germinans litter k increased linearly in surface soils with plot-level mangrove cover, whereas slow-decomposing red tea had similar k in subsurface soils of all plots. Litter k of S. alterniflora in surface soils and fast-decomposing green tea in subsurface soils increased non-linearly with mangrove cover (highest k at intermediate % cover), explained largely by temperature. Microbial respiration rates (R) were highest in interior marsh patches for S. alterniflora litter and increased with plot-level mangrove cover, whereas R associated with A. germinans litter was similar among fringe and interior patches and highest at higher mangrove cover. Despite widespread declines in soil nutrient concentrations throughout marsh and mangrove patches in all plots, most surface and subsurface rates of carbon processing increased with mangrove cover in coastal wetlands following a hurricane.

Publication Date:2021-12-02
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2017
End:
2019

People and Organizations
Contact:Kominoski, John Stephen (Florida International University, Associate Professor) [  email ]
Creator:Kominoski, John Stephen (Florida International University, Associate Professor)
Creator:Weaver, Carolyn A. 
Creator:Armitage, Anna R. 
Creator:Pennings, Steven C. 
Associate:Weaver, Carolyn A. (Texas A&M Corpus Christi, Assistant Professor, Collaborator)
Associate:Armitage, Anna R. (Texas A&M Galveston, Professor, Collaborator)
Associate:Pennings, Steven C. (University of Houston, Professor, Collaborator)

Data Entities
Data Table Name:
PAAG.2018.2019.Litter.Tea.080521
Description:
Surface and SubSurface Soil Organic Matter Processing following Hurricane Harvey, Texas, USA
Other Name:
PAAG.Litter.Tea.091221
Description:
R code to process and analyze data
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/925/4/60560cec07ac664251e27d54f85d458a
Name:PAAG.2018.2019.Litter.Tea.080521
Description:Surface and SubSurface Soil Organic Matter Processing following Hurricane Harvey, Texas, USA
Number of Records:357
Number of Columns:13

Table Structure
Object Name:PAAG.2018.2019.Litter.Tea.080521.csv
Size:37379 byte
Authentication:0c0d2a41c0cf3ea254a377c7e01f9d70 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 Sample.IDSpeciesMeshk_dk_ddRPlot.IDPatch.IDMangroveLocationPatch.locationLocation.patchSoil.S34
Column Name:Sample.ID  
Species  
Mesh  
k_d  
k_dd  
R  
Plot.ID  
Patch.ID  
Mangrove  
Location  
Patch.location  
Location.patch  
Soil.S34  
Definition:Sample IdentificationLeaf litter species or tea typeCoarse (5 millimeter) or fine (250 micrometer) mesh bagBreakdown rate per dayBreakdown rate per degree-dayMicrobial respiration rate Identification number of a given experimental plotIdentity of dominant patch vegetation typePlot-level percent mangrove coverLocation of patch within a given experimental plotPatch dominant vegetation type and location within a given experimental plotLocation within a given experimental plot and patch dominant vegetation typeSoil Sulfur Isotopic Content
Storage Type:string  
string  
string  
float  
float  
float  
float  
string  
float  
string  
string  
string  
float  
Measurement Type:nominalnominalnominalratioratioratiorationominalrationominalnominalnominalratio
Measurement Values Domain:
DefinitionSample Identification
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAvicennia
DefinitionGenus name of mangrove litter species
Source
Code Definition
Codegreen tea
Definitiongreen tea
Source
Code Definition
CodeMixed
DefinitionA mixture of Avicennia germinans and Spartina alterniflora
Source
Code Definition
Codered tea
Definitionred tea
Source
Code Definition
CodeSpartina
DefinitionGenus name of marsh litter species
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codecoarse
Definitionmesh size of litter bag (5 millimeters)
Source
Code Definition
Codefine
Definitionmesh size of litter bag (250 micrometers)
Source
Unitunitless
Typereal
Unitunitless
Typereal
Unitmilligrams oxygen per gram dry mass of litter per hour
Typereal
Unitunitless
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeMangrove
Definitionmangrove vegetation patch
Source
Code Definition
CodeMarsh
Definitionmangrove vegetation patch
Source
Unitpercent
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeFringe
DefinitionLocation within an experimental plot along the coastal fringe
Source
Code Definition
CodeInterior
DefinitionLocation within an experimental plot in the plot interior
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeMangrove-Fringe
Definitionmangrove vegetation patch located in plot fringe area
Source
Code Definition
CodeMangrove-Interior
Definitionmangrove vegetation patch located in plot interior area
Source
Code Definition
CodeMarsh-Fringe
Definitionmarsh vegetation patch located in plot fringe area
Source
Code Definition
CodeMarsh-Interior
Definitionmarsh vegetation patch located in plot fringe area
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeFringe-Mangrove
DefinitionLocation within an experimental plot along the coastal fringe within a mangrove patch
Source
Code Definition
CodeFringe-Marsh
DefinitionLocation within an experimental plot along the coastal fringe within a marsh patch
Source
Code Definition
CodeInterior-Mangrove
DefinitionLocation within an experimental plot along the plot interior within a mangrove patch
Source
Code Definition
CodeInterior-Marsh
DefinitionLocation within an experimental plot along the plot interior within a marsh patch
Source
Unitpercent per thousand
Typereal
Missing Value Code:                          
Accuracy Report:                          
Accuracy Assessment:                          
Coverage:                          
Methods:                          

Non-Categorized Data Resource

Name:PAAG.Litter.Tea.091221
Entity Type:R
Description:R code to process and analyze data
Physical Structure Description:
Object Name:PAAG.Litter.Tea.091221.R
Size:10948 byte
Authentication:ceb03f5f7906dfa04f5adb34fde0f01b Calculated By MD5
Externally Defined Format:
Format Name:R
Data:https://pasta-s.lternet.edu/package/data/eml/edi/925/4/9c4acfa88e14d37b78f77493b5ff0e8c

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularydisturbance, biogeochemistry, sulfide, nutrients
(No thesaurus)Avicennia germinans, Spartina alterniflora

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Study Site and Experimental Design

Our study was conducted on Harbor Island, near Port Aransas, TX (27.86N, 97.08W), in the Mission-Aransas National Estuarine Research Reserve. The vegetation at the site was initially dominated (90-100% cover) by A. germinans with patches (~10% cover) of salt marsh vegetation (mostly the succulents Batis maritima and Sarcocornia spp. and the grass Spartina alterniflora). In 2012, we established ten experimental plots (42 m  24 m) along the edge of the Lydia Ann Channel. We removed mangroves from the plots by cutting them at the soil surface to create a gradient of mangrove cover (nominally 0, 11, 22, 33, 44, 55, 66, 77, 88 and 100% mangrove cover). The plots were arranged in three blocks, with each block containing at least one low mangrove cover, one intermediate mangrove cover, and one high mangrove cover plot (FIG. S1, Guo et al. 2017). To facilitate maintenance and to simulate the natural patchiness of the vegetation, mangroves were removed or left in place within 3  3 m cells in a stratified random checkerboard pattern. Marsh vegetation naturally recolonized most cleared patches within 2 years (Guo et al. 2017). In each plot, we collected samples from four 3 × 3 m patches along the coastal fringe (fringe patches in the front third of each plot) and four 3 × 3 m patches within the plot interior (interior patches). Replicate cells (n = 8 per plot) were all marsh (in the 0% mangrove plot), all mangrove (in the 100% mangrove plot) or half marsh and half mangrove (in mixed-species plots) for a total of n = 80 replicates.

On 25 August 2017, experimental plots were directly affected by Hurricane Harvey, a Category 4 storm that made landfall nearby (FIG. S1). Plots were exposed to hurricane-force winds exceeding 119 kph for approximately 6 h, with gusts up to 225 kph (NOAA 2019). A tide gauge at Port Aransas, near the experimental plots, recorded a storm surge of 1.6 m above MLLW (NOAA 2019), and estimates of storm surge based on debris deposition and other flood evidence indicated a storm surge of up to 2.4 m (USGS 2019). Storm surge flooding (0.8 m above MLLW) persisted for approximately 6 h.

Soil Temperature

Throughout the experiment, we recorded soil temperature continuously (30-minute intervals) using HOBO temperature sensors (Onset Computer Corporation, Bourne, Massachusetts, USA) placed at 5 cm depth. Temperature sensors were inserted into interior patches of the 0% mangrove (100% marsh) and 100% mangrove plots (n = 2 total).

Subsurface Soil Sulfide Concentrations

In 2017 and 2018, we collected soil cores (5 cm diameter  30 cm depth) in each of the same randomized cells where feldspar marker horizons were established (n = 8 per plot) to measure chemistry in subsurface soils. We removed roots from cores and homogenized soils prior to chemical analysis. Subsamples were dried at 60C to a constant dry mass. We ground and homogenized portions with an 8000-D ball mill (Spex SamplePrep, Metuchen, New Jersey, USA). We measured stable isotopes of sulfur from subsurface soils (0-30 cm). The ratios of heavy to light stable isotopes are expressed as  to indicate relative depletion (-) or the enrichment (+) of the heavy isotope compared to the lighter isotope relative to a standard, according to the formula: δX (‰) = ([R sample / R standard] - 1)  103 where X is 34S and R is 34S:32S. Results were presented as deviations from a standard (Canyon Diablo triolites for S). Repeatability was δ34S ± 0.3‰.

Surface and Subsurface Organic Matter Breakdown Rates

On 23 June 2017, we deployed rooibos (red) and green tea standard substrate litter at 15-cm depth of soil in marsh and mangrove patches at the front (fringe) and back corners (interior) of each of the 10 plots (see Keuskamp et al. 2013). Tea litterbags were retrieved on 15 June 2018 after 357 d of incubation. We calculated green and red tea breakdown rates (k) using the exponential decay equation Mt = M0*e-kt, whereby Mt is the final dry mass, M0 is the initial dry mass, and t is time in days (k, d-1), as well as per degree-day (k, dd-1).

We harvested S. alterniflora and A. germinans green leaves (hereafter litter) from the field on 07 November 2018 and allowed them to air dry for 24 h. Approximately 5 g of individual and mixed-species litter were placed into 1-mm nylon mesh bags (5  15 cm) that were divided in half. Individual species litter was placed in one half, and mixed-species litter was placed in the other half. On 09 November 2018, litterbags were deployed into replicate marsh and mangrove patches in fringe and interior zones in each of the 10 plots. Replicate patches (n = 8 per plot) were all marsh (in the 0% mangrove plot), all mangrove (in the 100% mangrove plot) or half marsh and half mangrove (in mixed plots) for a total of n = 80 replicates. A total of n = 160 litterbags (n = 80 individual species, n = 80 mixed-species) were deployed. Litterbags containing individual S. alterniflora litter and mixtures of S. alterniflora and A. germinans litter were deployed in marsh patches. Litterbags containing individual A. germinans litter and mixtures of A. germinans and S. alterniflora litter were deployed in mangrove patches. On 24 June 2019, litter samples were retrieved after 227 d incubation and returned to the lab on ice. We used the exponential decay equation (above) to quantify breakdown rates per day (k, d-1), as well as per degree-day (k, dd-1).

Microbial Respiration Rates

We measured microbial respiration rates (R) on decomposing S. alterniflora and A. germinans litter retrieved from individual and mixed-species litterbags after field incubation. Subsamples of field incubated litter were placed in glass vials (40 mL) in the laboratory. Vials were completely filled with filtered site seawater to remove any gas head space, sealed with caps, and placed in the dark for 1 h. Dissolved oxygen concentrations were measured at the beginning and end of lab incubations using YSI ProODO Dissolved Oxygen meters (Yellow Springs, Ohio, USA). Additional vials (n = 2) containing only site water served as controls. Oxygen consumption rates were determined as the slope of the regression of dissolved oxygen concentration over time minus the slope of the control, and respiration rates were expressed per gram dry mass of litter per hour.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Id:https://ror.org/0330j0z60
Creators:
Individual: John Stephen Kominoski
Organization:Florida International University
Position:Associate Professor
Address:
11200 SW 8th Street,
Miami, FL 33199 United States
Phone:
3053487117 (voice)
Email Address:
jkominos@fiu.edu
Web Address:
https://kominoskilab.com
Id:https://orcid.org/0000-0002-0978-3326
Individual: Carolyn A. Weaver
Individual: Anna R. Armitage
Individual: Steven C. Pennings
Contacts:
Individual: John Stephen Kominoski
Organization:Florida International University
Position:Associate Professor
Address:
11200 SW 8th Street,
Miami, FL 33199 United States
Phone:
3053487117 (voice)
Email Address:
jkominos@fiu.edu
Web Address:
https://kominoskilab.com
Id:https://orcid.org/0000-0002-0978-3326
Associated Parties:
Individual: Carolyn A. Weaver
Organization:Texas A&M Corpus Christi
Position:Assistant Professor
Email Address:
carolyn.weaver@millersville.edu
Id:https://orcid.org/0000-0002-1447-6371
Role:Collaborator
Individual: Anna R. Armitage
Organization:Texas A&M Galveston
Position:Professor
Email Address:
armitaga@tamug.edu
Id:https://orcid.org/0000-0003-1563-8026
Role:Collaborator
Individual: Steven C. Pennings
Organization:University of Houston
Position:Professor
Email Address:
scpennin@central.uh.edu
Id:https://orcid.org/0000-0003-4757-7125
Role:Collaborator
Metadata Providers:
Individual: John Stephen Kominoski
Organization:Florida International University
Position:Associate Professor
Address:
11200 SW 8th Street,
Miami, FL 33199 United States
Phone:
3053487117 (voice)
Email Address:
jkominos@fiu.edu
Web Address:
https://kominoskilab.com
Id:https://orcid.org/0000-0002-0978-3326

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2017
End:
2019
Geographic Region:
Description:Harbor Island, Coastal Texas, USA
Bounding Coordinates:
Northern:  27.869871Southern:  27.860281
Western:  -97.056961Eastern:  -97.052687

Project

Parent Project Information:

Title:Surface and SubSurface Soil Organic Matter Processing following Hurricane Harvey, Texas, USA
Personnel:
Individual: John S Kominoski
Organization:Florida International University
Position:Associate Professor
Address:
11200 SW 8th Street,
Miami, FL 33199 United States
Phone:
3053487117 (voice)
Email Address:
jkominos@fiu.edu
Id:https://orcid.org/0000-0002-0978-3326
Role:Lead
Individual: Carolyn A. Weaver
Organization:Texas A&M Corpus Christi
Position:Assistant Professor
Email Address:
carolyn.weaver@millersville.edu
Id:https://orcid.org/0000-0002-1447-6371
Role:Collaborator
Individual: Anna R. Armitage
Organization:Texas A&M Galveston
Position:Professor
Email Address:
armitaga@tamug.edu
Id:https://orcid.org/0000-0003-1563-8026
Role:Collaborator
Individual: Steven C. Pennings
Organization:University of Houston
Position:Professor
Email Address:
scpennin@central.uh.edu
Id:https://orcid.org/0000-0003-4757-7125
Role:Collaborator

Maintenance

Maintenance:
Description:

Maintenance of the dataset will be performed by the creator.

Frequency:asNeeded
Other Metadata

Additional Metadata

additionalMetadata
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        |     |     |     |  \___attribute 'id' = 'milligrams oxygen per gram dry mass of litter per hour'
        |     |     |     |  \___attribute 'name' = 'milligrams oxygen per gram dry mass of litter per hour'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Rate of oxygen consumption due to microbial respiration.'
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Additional Metadata

additionalMetadata
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