Data Package Metadata View Summary

Sediment, crab, and vegetation data from Sapelo Island, Georgia: 2017 - 2019

General Information

Data Package:

Local Identifier:

edi.955.1

Title:

Sediment, crab, and vegetation data from Sapelo Island, Georgia: 2017 - 2019

Alternate Identifier:

DOI PLACE HOLDER

Abstract:

Sediment samples, Sesarma reticulatum gut and tissue samples, Spartina alterniflora leaves, and benthic diatoms were analyzed for a suite of biogeochemical parameters, including total carbon, total nitrogen, stable isotopes of carbon and nitrogen, and a subset of samples were analyzed for total hydrolyzable amino acids. Samples were collected between 2017 and 2019 on Sapelo Island, Georgia, USA. Samples were collected from Sesarma-grazed and un-grazed creeks. Analyses were conducted at the University of Florida and are associated with the manuscript by Morrison et al. entitled Influence of the keystone grazer, Sesarma reticulatum, on the hydrology and organic matter cycling of salt marshes in the southeastern United States.

Publication Date:

2022-08-12

For more information:
Visit:	DOI PLACE HOLDER

Time Period

Begin:

2017

End:

2019

People and Organizations
Contact:	Morrison, Elise S. (University of Florida, Assistant Professor) [ email ]
Creator:	Morrison, Elise S. (University of Florida, Assistant Professor)
Creator:	Bianchi, Thomas S. (University of Florida, Professor)
Creator:	Kenney, William F (University of Florida, Faculty Scientist)
Creator:	Brenner, Mark (University of Florida, Professor)
Creator:	Prince, Kimberly (University of Florida, Research Scientist)
Creator:	Williams, Sydney (University of Florida, PhD Student)
Creator:	Ortals, Collin J (University of Florida, Associate Research Scientist)
Creator:	Cordero, Orlando (University of Florida)
Creator:	Crotty, Sinead (Yale University, Project Manager)
Creator:	Angelini, Christine (University of Florida, Associate Professor)

Data Entities
Data Table Name:	Elemental Analysis and Stable Isotopes
Description:	Data set that includes total carbon, organic carbon, total nitrogen, and stable isotope values of carbon and nitrogen for sediment, crab and vegetation samples.
Data Table Name:	Amino acid dataset
Description:	Data set that includes total hydrolyzable amino acids for sediment and crab gut samples.

Detailed Metadata

Data Entities

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/955/1/5092c3143ccf44efc60e10d27e23d0b1
Name:	Elemental Analysis and Stable Isotopes
Description:	Data set that includes total carbon, organic carbon, total nitrogen, and stable isotope values of carbon and nitrogen for sediment, crab and vegetation samples.
Number of Records:	306
Number of Columns:	15

Table Structure

Object Name:

ElementalAnalysis_Isotopes.csv

Size:

30287 byte

Authentication:

a934f9b5973e4b7b0d433855c18d4611 Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

\r\n

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

SampleID

Location

Site

Status

Position

Replicate

SoilType

USS.depth.cm

d15N

d13C_not_acidified

wt %TN

wt %TC

acidified d13C (permil, vs VPDB)

acidified wt %N

acidified wt %C

Column Name:

SampleID

Location

Site

Status

Position

Replicate

SoilType

USS.depth.cm

d15N

d13C_not_acidified

wt %TN

wt %TC

acidified d13C (permil, vs VPDB)

acidified wt %N

acidified wt %C

Definition:

Unique sample identifier

Description of the location and sample type

Site description for sediment samples, or a description of tissue type for endmembers

Description of whether the creek was grazed or un-grazed; for endmembers, a repeat of the sample/tissue type

For sediment samples, the position along the creek where sample was collected; for endmember samples, a repeat of sample type

Field replicate identifier for sediment samples; if endmembers, then a repeat of sample type

For sediment samples, what sediment horizon was collected; for endmembers, a repeat of sample type

Depth of the Unconsolidated surface seciment measured in centimeters

Stable isotope value for nitrogen

Stable isotope value of carbon for samples that were not acidified

Percent total nitrogen

Percent total carbon, values from non-acidified samples

Stable isotope value of carbon from acidified samples

Percent total nitrogen, measured from acidified samples

Percent total carbon for acidified samples; total organic carbon

Storage Type:

string

float

Measurement Type:

nominal

ratio

Measurement Values Domain:

Definition

Unique sample identifier

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	Benthic diatoms
Definition	Benthic diatoms grown from sediment samples
Source

Code Definition

Code	BR
Definition	Beach Road; in the manuscript this is described as creek D
Source

Code Definition

Code	LG
Definition	A size and sex class of Sesarma reticulatum; Large Gravid
Source

Code Definition

Code	LM
Definition	A size and sex class of Sesarma reticulatum; Large Male
Source

Code Definition

Code	LS
Definition	Little Sapelo Island
Source

Code Definition

Code	MF
Definition	A size and sex class of Sesarma reticulatum; Medium Female
Source

Code Definition

Code	MG
Definition	A size and sex class of Sesarma reticulatum; Medium Gravid
Source

Code Definition

Code	MM
Definition	A size and sex class of Sesarma reticulatum; Medium Male
Source

Code Definition

Code	Sesarma
Definition	Crab genus; used as code for whole crab and soft tissue samples
Source

Code Definition

Code	SF
Definition	A size and sex class of Sesarma reticulatum; Small Female
Source

Code Definition

Code	SG
Definition	A size and sex class of Sesarma reticulatum; Small Gravid
Source

Code Definition

Code	SM
Definition	A size and sex class of Sesarma reticulatum; Small Male
Source

Code Definition

Code	Spartina
Definition	Genus of vegetation studied
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	Airport
Definition	Creek identifier; in the manuscript this corresponds with Creek C
Source

Code Definition

Code	Benthic diatoms
Definition	Benthic diatoms grown from sediment sample
Source

Code Definition

Code	BR
Definition	Beach road; Creek identifier; in the manuscript this corresponds with Creek D
Source

Code Definition

Code	East
Definition	Creek identifier; in the manuscript this corresponds with Creek B
Source

Code Definition

Code	Gut
Definition	Description of tissue type; gut samples collected from Sesarma
Source

Code Definition

Code	North
Definition	Creek identifier; in the manuscript this corresponds with Creek A
Source

Code Definition

Code	Soft tissue
Definition	Description of tissue type; soft tissue samples collected from Sesarma
Source

Code Definition

Code	Spartina
Definition	The genus of vegetation studied
Source

Code Definition

Code	Whole crab
Definition	Description of tissue type; whole Sesarma crabs
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	Benthic diatoms
Definition	Benthic diatoms grown from sediment samples
Source

Code Definition

Code	Grazed
Definition	Creek was grazed by Sesarma
Source

Code Definition

Code	Gut
Definition	A description of tissue type; Sesarma gut sample
Source

Code Definition

Code	non-acid rinsed
Definition	A description of tissue treatment; whole Sesarma that was not acid rinsed
Source

Code Definition

Code	Soft tissue
Definition	A description of tissue type; Sesarma soft tissue sample
Source

Code Definition

Code	Spartina
Definition	Genus of vegetation sample studied
Source

Code Definition

Code	Un-grazed
Definition	Creek was not grazed by Sesarma
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	1
Definition	Creek zone 1, this zone is closest to Doboy sound
Source

Code Definition

Code	2
Definition	Creek zone 2; the region of recent grazing that exhibited Spartina alterniflora regrowth
Source

Code Definition

Code	3
Definition	Creek zone 3; the region of the creek head with soft sediment and no vegetation
Source

Code Definition

Code	4
Definition	Creek zone 4; the region with firm sediment and the greatest Sesarma burrow density along the creek head
Source

Code Definition

Code	5
Definition	Creek Zone 5; the region directly adjacent to Zone 4 but had live Spartina present
Source

Code Definition

Code	6
Definition	Creek zone 6, this is a site that is 15m into the marsh platform from the creekhead
Source

Code Definition

Code	7
Definition	Creek zone 7, this is a site that is 30m into the marsh platform from the creekhead
Source

Code Definition

Code	Benthic diatoms
Definition	Benthic diatom samples grown from sediments
Source

Code Definition

Code	Fore-gut
Definition	Samples that were collected from Sesarma fore- gut
Source

Code Definition

Code	Hind-gut
Definition	Samples that were collected from Sesarma hind- gut
Source

Code Definition

Code	Soft tissue
Definition	Sesarma soft tissues
Source

Code Definition

Code	Spartina
Definition	Genus of the vegetation samples studied
Source

Code Definition

Code	Whole crab
Definition	Whole Sesarma crab samples
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	1
Definition	First sediment replicate
Source

Code Definition

Code	2
Definition	Second field replicate
Source

Code Definition

Code	3
Definition	Third field replicate
Source

Code Definition

Code	Benthic diatoms
Definition	Benthic diatoms grown from sediment samples
Source

Code Definition

Code	Gut
Definition	Sesarma gut sample type
Source

Code Definition

Code	Soft tissue
Definition	Sesarma soft tissues
Source

Code Definition

Code	Spartina
Definition	Genus of vegetation sample studied
Source

Code Definition

Code	Whole crab
Definition	Whole Sesarma crab sample
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	Benthic diatoms
Definition	Benthic diatoms grown from sediment samples
Source

Code Definition

Code	Gut
Definition	Sesarma gut sample
Source

Code Definition

Code	Lower Horizon
Definition	Sediment sample collected from lower horizon; determined via visual inspection
Source

Code Definition

Code	No Horizon
Definition	Sediment core did not have a visible horizon; determined via visual inspection
Source

Code Definition

Code	Soft tissue
Definition	Sesarma soft tissue sample
Source

Code Definition

Code	Spartina
Definition	Genus for the vegetation studied
Source

Code Definition

Code	Upper Horizon
Definition	Sediment sample collected from upper horizon; determined via visual inspection
Source

Code Definition

Code	Whole crab
Definition	Whole Sesarma crab sample
Source

Unit	centimeter
Type	real

Unit	permil
Type	real

Unit	permil
Type	real

Unit	percent
Type	real

Unit	percent
Type	real

Unit	permil
Type	real

Unit	percent
Type	real

Unit	percent
Type	real

Missing Value Code:

Code	NA
Expl	Lower horizons did not have data reported; USS is only reported for the upper horizon samples

Code	NA
Expl	Not measured for the sample

Code	NA
Expl	Sample not analyzed

Code	NA
Expl	Sample not analyzed

Code	NA
Expl	Sample not analyzed

Code	NA
Expl	Sample not analyzed

Code	NA
Expl	Sample not analyzed

Code	NA
Expl	Sample not analyzed

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/edi/955/1/00362c0096cc9e21a36a0700b7d0812c
Name:	Amino acid dataset
Description:	Data set that includes total hydrolyzable amino acids for sediment and crab gut samples.
Number of Records:	46
Number of Columns:	63

Table Structure

Object Name:

Sapelo_AA_data.csv

Size:

17489 byte

Authentication:

14812e1a4f3c0435b3fd7d7dedd9498b Calculated By MD5

Text Format:

Number of Header Lines:

Record Delimiter:

\r\n

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

unique_id

carbon

THAA_umgc

THAA_umgs

umgc_Ala

umgc_Arg

umgc_Asp

umgc_DAPA

umgc_GABA

umgc_Glu

umgc_Gly

umgc_His

umgc_Hyp

umgc_Ile

umgc_Leu

umgc_Lys

umgc_MurA

umgc_Phe

umgc_Pro

umgc_Ser

umgc_Thr

umgc_Tyr

umgc_Val

umgs_NA

umgs_Ala

umgs_Arg

umgs_Asp

umgs_DAPA

umgs_GABA

umgs_Glu

umgs_Gly

umgs_His

umgs_Hyp

umgs_Ile

umgs_Leu

umgs_Lys

umgs_MurA

umgs_Phe

umgs_Pro

umgs_Ser

umgs_Thr

umgs_Tyr

umgs_Val

mole.percent_NA

mole.percent_Ala

mole.percent_Arg

mole.percent_Asp

mole.percent_DAPA

mole.percent_GABA

mole.percent_Glu

mole.percent_Gly

mole.percent_His

mole.percent_Hyp

mole.percent_Ile

mole.percent_Leu

mole.percent_Lys

mole.percent_MurA

mole.percent_Phe

mole.percent_Pro

mole.percent_Ser

mole.percent_Thr

mole.percent_Tyr

mole.percent_Val

Column Name:

unique_id

carbon

THAA_umgc

THAA_umgs

umgc_Ala

umgc_Arg

umgc_Asp

umgc_DAPA

umgc_GABA

umgc_Glu

umgc_Gly

umgc_His

umgc_Hyp

umgc_Ile

umgc_Leu

umgc_Lys

umgc_MurA

umgc_Phe

umgc_Pro

umgc_Ser

umgc_Thr

umgc_Tyr

umgc_Val

umgs_NA

umgs_Ala

umgs_Arg

umgs_Asp

umgs_DAPA

umgs_GABA

umgs_Glu

umgs_Gly

umgs_His

umgs_Hyp

umgs_Ile

umgs_Leu

umgs_Lys

umgs_MurA

umgs_Phe

umgs_Pro

umgs_Ser

umgs_Thr

umgs_Tyr

umgs_Val

mole.percent_NA

mole.percent_Ala

mole.percent_Arg

mole.percent_Asp

mole.percent_DAPA

mole.percent_GABA

mole.percent_Glu

mole.percent_Gly

mole.percent_His

mole.percent_Hyp

mole.percent_Ile

mole.percent_Leu

mole.percent_Lys

mole.percent_MurA

mole.percent_Phe

mole.percent_Pro

mole.percent_Ser

mole.percent_Thr

mole.percent_Tyr

mole.percent_Val

Definition:

Unique identifier for each sample

Percent carbon

Concentration (in uM) of total hydrolyzable amino acids per gram of carbon

Concentration (in uM) of total hydrolyzable amino acids per gram of sample

Concentration (in uM) of alanine per gram of carbon

Concentration (in uM) of arginine per gram of carbon

Concentration (in uM) of aspartic acid per gram of carbon

Concentration (in uM) of diaminopimelic acid per gram of carbon

Concentration (in uM) of gamma-aminobutyric acid per gram of carbon

Concentration (in uM) of glutamic acid per gram of carbon

Concentration (in uM) of glycine per gram of carbon

Concentration (in uM) of histidine per gram of carbon

Concentration (in uM) of hydroxyproline per gram of carbon

Concentration (in uM) of isoleucine per gram of carbon

Concentration (in uM) of leucine per gram of carbon

Concentration (in uM) of lysine per gram of carbon

Concentration (in uM) of muramic acid per gram of carbon

Concentration (in uM) of phenylalanine per gram of carbon

Concentration (in uM) of proline per gram of carbon

Concentration (in uM) of serine per gram of carbon

Concentration (in uM) of threonine per gram of carbon

Concentration (in uM) of tyrosine per gram of carbon

Concentration (in uM) of valine per gram of carbon

blank column

Concentration (in uM) of alanine per gram of sample

Concentration (in uM) of arginine per gram of sample

Concentration (in uM) of aspartic acid per gram of sample

Concentration (in uM) of diaminopimelic acid per gram of sample

Concentration (in uM) of gamma-aminobutyric acid per gram of sample

Concentration (in uM) of glutamic acid per gram of sample

Concentration (in uM) of glycine per gram of sample

Concentration (in uM) of histidine per gram of sample

Concentration (in uM) of hydroxyproline per gram of sample

Concentration (in uM) of isoleucine per gram of sample

Concentration (in uM) of leucine per gram of sample

Concentration (in uM) of lysine per gram of sample

Concentration (in uM) of muramic acid per gram of sample

Concentration (in uM) of phenylalanine per gram of sample

Concentration (in uM) of proline per gram of sample

Concentration (in uM) of serine per gram of sample

Concentration (in uM) of threonine per gram of sample

Concentration (in uM) of tyrosine per gram of sample

Concentration (in uM) of valine per gram of sample

blank column

Mole percent of alanine

Mole percent of arginine

Mole percent of aspartic acid

empty column

Mole percent of glutamic acid

Mole percent of glycine

Mole percent of histidine

blank column

Mole percent of isoleucine

Mole percent of leucine

Mole percent of lysine

blank column

Mole percent of phenylalanine

Mole percent of proline

Mole percent of serine

Mole percent of threonine

Mole percent of tyrosine

Mole percent of valine

Storage Type:

string

float

string

float

string

float

string

float

string

float

string

float

Measurement Type:

nominal

ratio

nominal

ratio

nominal

ratio

nominal

ratio

nominal

ratio

nominal

ratio

Measurement Values Domain:

Definition

Unique identifier for each sample

Unit	percent
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	not measured
Source

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Unit	micromolePerGram
Type	real

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	not measured
Source

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	not measured
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	not measured
Source

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	not measured
Source

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	nan
Definition	Not measured
Source

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Unit	mole percent
Type	real

Missing Value Code:

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabulary	carbon, nitrogen, amino acids
(No thesaurus)	salt marsh

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package

Description:

Sample collection. Samples for elemental and stable isotope analyses were collected between 2017 and 2019. Crab gut contents were analyzed to characterize changes in the composition of organic matter as it undergoes Sesarma processing. In 2019, crabs were collected from Sapelo Island and gut samples were collected from the fore- and hind-guts of 175 individuals from three size classes [small (8.0-13.7 mm); medium (11.4-16.8 mm), and large (17.0-22.2 mm)]. Whole Sesarma crabs and their tissues were collected in 2017. To identify Sesarma dietary sources, live Spartina leaves were collected and benthic diatoms were grown at the University of Florida, using methods similar to (Borst et al., 2018). To evaluate differences in sediment OM between grazed and un-grazed creeks, sediment samples were collected in June 2018 from creek pairs (A-D). Triplicate cores were collected in June 2018 from seven zones along each creek (n = 168 cores), using a push corer with a 10-cm-ID polycarbonate core barrel with beveled head and were sectioned in the field. Cores were inspected to determine if unconsolidated surface sediment (USS) was present. The soft and ‘fluffy’ USS (upper horizon) was distinguished from the consolidated, root-bound sediment (hereafter referred to as “sediment”; lower horizon), which was denser and firmer. The USS was comprised of fine sediments, and when mussels were present, could also contain their feces/pseudofeces. The USS samples were collected separately from the rest of the sediment to evaluate differences between recently deposited material (USS) and more consolidated root-bound material (sediment). If USS was present, its depth was measured, the core was partially extruded in a vertical position, and the USS was removed from the top of the core with a knife and transferred to a Whirl-pakTM bag. After USS was collected, the core was extruded further, and the topmost 5 cm of sediment were collected into a Whirl-pakTM bag. If no USS was present, this was noted, and the topmost (0-5 cm) sediment was collected. Samples were stored at 4°C while in transit to the laboratory (< 4 hours) and stored at -20°C until further processing. Frozen samples were freeze-dried, homogenized, and ground with a roller mill prior to analysis.

Description:

Elemental analysis and stable isotopes. A subset of the dried, ground samples described in the sample collection method step (Sesarma gut contents, Sesarma muscle tissue, whole Sesarma crabs, Spartina leaf clippings, diatom filters, USS and sediments) were weighed into tin capsules for total carbon (TC), total nitrogen (TN), and d15N analysis, and another subset of sample was weighed into silver capsules, fumigation acidified according to Harris et al. (2001) and analyzed for total organic carbon (TOC) and d13C. Elemental and stable isotope analysis was conducted at the University of Florida’s Stable Isotope Laboratory, using a Carlo Erba 1500 CN elemental analyzer coupled to a Thermo Electron DeltaV Advantage isotope ratio mass spectrometer (Carlo Erba/ThermoFisher Scientific™, Waltham, MA, USA). Stable isotope ratios for carbon and nitrogen are reported in standard delta notation (d13C and d15N) relative to Vienna Pee Dee Belemnite (VPDB) and atmospheric N2, respectively. References: Borst, A. C. W., Verberk, W. C. E. P., Angelini, C., Schotanus, J., Wolters, J.-W., Christianen, M. J. A., van der Zee, E. M., Derksen-Hooijberg, M., & van der Heide, T. (2018). Foundation species enhance food web complexity through non-trophic facilitation. PLoS One, 13(8), e0199152. https://doi.org/10.1371/journal.pone.0199152 Harris, D., Horwath, W. R., & van Kessel, C. (2001). Acid fumigation of soils to remove carbonates prior to total organic carbon or carbon-13 isotopic analysis. Soil Science Society of America Journal, 65(6), 1853-1856. https://doi.org/10.2136/sssaj2001.1853

Instrument(s):

Carlo Erba 1500 CN elemental analyzer coupled to a Thermo Electron DeltaV Advantage isotope ratio mass spectrometer

Description:

Total hydrolyzable amino acids. Details about sample collection are included in the sample collection method step. Sediment samples from one grazed and one un-grazed creek (Creek Pair A) and Sesarma crab gut contents (fore- and hind-gut) were analyzed for 19 amino acids, according to Hutchings et al. (2018), and analyzed with a Thermo-Scientific Dionex 3000™ ultra-high-performance liquid chromatography system, coupled to a Thermo-Scientific TSQ Endura H-ESI triple quadrupole mass spectrometer (ThermoFisher Scientific™, Waltham, MA, USA) at the University of Florida. Those samples that contained amino acids in concentrations below detectable levels are reported as null values in the dataset. Reference: Hutchings, J. A., Shields, M. R., Bianchi, T. S., & Schuur, E. A. G. (2018). A rapid and precise method for the analysis of underivatized amino acids in natural samples using volatile-ion-pairing reverse-phase liquid chromatography-electrospray ionization tandem mass spectrometry. Organic Geochemistry, 115, 46-56. https://doi.org/10.1016/j.orggeochem.2017.10.007

Instrument(s):

Thermo-Scientific Dionex 3000™ ultra-high-performance liquid chromatography system coupled to a Thermo-Scientific TSQ Endura H-ESI triple quadrupole mass spectrometer (ThermoFisher Scientific™, Waltham, MA, USA)

People and Organizations

Publishers:

Organization:

Environmental Data Initiative

Email Address:

info@edirepository.org

Web Address:

https://edirepository.org

Id:

https://ror.org/0330j0z60

Creators:

Individual:

Elise S. Morrison

Organization:

University of Florida

Position:

Assistant Professor

Email Address:

elise.morrison@essie.ufl.edu

Id:

https://orcid.org/0000000325694259

Individual:	Thomas S. Bianchi
Organization:	University of Florida
Position:	Professor

Individual:	William F Kenney
Organization:	University of Florida
Position:	Faculty Scientist

Individual:	Mark Brenner
Organization:	University of Florida
Position:	Professor

Individual:	Kimberly Prince
Organization:	University of Florida
Position:	Research Scientist

Individual:	Sydney Williams
Organization:	University of Florida
Position:	PhD Student

Individual:	Collin J Ortals
Organization:	University of Florida
Position:	Associate Research Scientist

Individual:	Orlando Cordero
Organization:	University of Florida

Individual:	Sinead Crotty
Organization:	Yale University
Position:	Project Manager

Individual:	Christine Angelini
Organization:	University of Florida
Position:	Associate Professor

Contacts:

Individual:

Elise S. Morrison

Organization:

University of Florida

Position:

Assistant Professor

Email Address:

elise.morrison@essie.ufl.edu

Id:

https://orcid.org/0000000325694259

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period

Begin:

2017

End:

2019

Taxonomic Range:

Classification:

Rank Name:

Kingdom

Rank Value:

Animalia

Common Name:

animals

Identifer:

https://www.itis.gov
ID: 202423

Classification:

Rank Name:

Subkingdom

Rank Value:

Bilateria

Identifer:

https://www.itis.gov
ID: 914154

Classification:

Rank Name:

Infrakingdom

Rank Value:

Protostomia

Identifer:

https://www.itis.gov
ID: 914155

Classification:

Rank Name:

Superphylum

Rank Value:

Ecdysozoa

Identifer:

https://www.itis.gov
ID: 914158

Classification:

Rank Name:

Phylum

Rank Value:

Arthropoda

Common Name:

arthropods

Identifer:

https://www.itis.gov
ID: 82696

Classification:

Rank Name:

Subphylum

Rank Value:

Crustacea

Common Name:

crustaceans

Identifer:

https://www.itis.gov
ID: 83677

Classification:

Rank Name:

Class

Rank Value:

Malacostraca

Identifer:

https://www.itis.gov
ID: 89787

Classification:

Rank Name:

Subclass

Rank Value:

Eumalacostraca

Identifer:

https://www.itis.gov
ID: 89801

Classification:

Rank Name:

Superorder

Rank Value:

Eucarida

Identifer:

https://www.itis.gov
ID: 95495

Classification:

Rank Name:

Order

Rank Value:

Decapoda

Common Name:

crabs

Identifer:

https://www.itis.gov
ID: 95599

Classification:

Rank Name:

Suborder

Rank Value:

Pleocyemata

Identifer:

https://www.itis.gov
ID: 96105

Classification:

Rank Name:

Infraorder

Rank Value:

Brachyura

Common Name:

short-tailed crabs

Identifer:

https://www.itis.gov
ID: 98276

Classification:

Rank Name:

Superfamily

Rank Value:

Grapsoidea

Identifer:

https://www.itis.gov
ID: 206961

Classification:

Rank Name:

Family

Rank Value:

Sesarmidae

Identifer:

https://www.itis.gov
ID: 621520

Classification:

Rank Name:

Genus

Rank Value:

Sesarma

Identifer:

https://www.itis.gov
ID: 99037

Classification:

Rank Name:	Species
Rank Value:	Sesarma reticulatum
Common Name:	heavy marsh crab
Identifer:	https://www.itis.gov ID: 99039

Taxonomic Range:

Classification:

Rank Name:

Kingdom

Rank Value:

Plantae

Common Name:

plants

Identifer:

https://www.itis.gov
ID: 202422

Classification:

Rank Name:

Subkingdom

Rank Value:

Viridiplantae

Common Name:

green plants

Identifer:

https://www.itis.gov
ID: 954898

Classification:

Rank Name:

Infrakingdom

Rank Value:

Streptophyta

Common Name:

land plants

Identifer:

https://www.itis.gov
ID: 846494

Classification:

Rank Name:

Division

Rank Value:

Tracheophyta

Common Name:

vascular plants

Identifer:

https://www.itis.gov
ID: 846496

Classification:

Rank Name:

Subdivision

Rank Value:

Spermatophytina

Common Name:

spermatophytes

Identifer:

https://www.itis.gov
ID: 846504

Classification:

Rank Name:

Class

Rank Value:

Magnoliopsida

Identifer:

https://www.itis.gov
ID: 18063

Classification:

Rank Name:

Superorder

Rank Value:

Lilianae

Common Name:

monocots

Identifer:

https://www.itis.gov
ID: 846542

Classification:

Rank Name:

Order

Rank Value:

Poales

Identifer:

https://www.itis.gov
ID: 846620

Classification:

Rank Name:

Family

Rank Value:

Poaceae

Identifer:

https://www.itis.gov
ID: 40351

Classification:

Rank Name:

Genus

Rank Value:

Spartina

Identifer:

https://www.itis.gov
ID: 41266

Classification:

Rank Name:	Species
Rank Value:	Spartina alterniflora
Identifer:	https://www.itis.gov ID: 41267

Project

Parent Project Information:

Title:

Influence of the keystone grazer, Sesarma reticulatum, on the hydrology and organic matter cycling of salt marshes in the southeastern United States

Personnel:

Individual:

Elise S. Morrison

Organization:

University of Florida

Position:

Assistant Professor

Email Address:

elise.morrison@essie.ufl.edu

Id:

https://orcid.org/0000000325694259

Role:

Lead Author

Maintenance

Maintenance:

Description:	This data resource was generated with data collected from a set period of time. No new data will be added, but the data will be maintained and updated as needed.
Frequency:

Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'mole percent'
        |     |     |     |  \___attribute 'name' = 'mole percent'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'emlEditor'
        |     |        \___attribute 'app' = 'ezEML'
        |     |        \___attribute 'release' = '2022.08.10'
        |     |___text '\n    '
        |___text '\n  '

Copyright 2024 Environmental Data Initiative. This material is based upon work supported by the National Science Foundation under grants #2223103 and #2223104. Any opinions, findings, conclusions, or recommendations expressed in the material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. Please contact us with questions, comments, or for technical assistance regarding this web site or the Environmental Data Initiative. Please read our privacy policy to know what information we collect about you and to understand your privacy rights.

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

Data Package Metadata View Summary

Sediment, crab, and vegetation data from Sapelo Island, Georgia: 2017 - 2019

Data Entities

Data Table

Data Table

Data Package Usage Rights

Keywords

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

People and Organizations

Temporal, Geographic and Taxonomic Coverage

Project

Parent Project Information:

Maintenance

Additional Metadata

Additional Metadata

Recently Added

Recently Updated

Data Package Metadata View Summary

Sediment, crab, and vegetation data from Sapelo Island, Georgia: 2017 - 2019

+/- Data Entities

Data Table

Data Table

+/- Data Package Usage Rights

+/- Keywords

+/- Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

+/- People and Organizations

+/- Temporal, Geographic and Taxonomic Coverage

+/- Project

Parent Project Information:

+/- Maintenance

+/- Additional Metadata

+/- Additional Metadata

Data Entities

Data Package Usage Rights

Keywords

Methods and Protocols

People and Organizations

Temporal, Geographic and Taxonomic Coverage

Project

Maintenance

Additional Metadata

Additional Metadata