Data Package Metadata   View Summary

Deciphering the Origin of Riverine Phytoplankton Using In-Situ Chlorophyll Sensors

General Information
Data Package:
Local Identifier:edi.973.1
Title:Deciphering the Origin of Riverine Phytoplankton Using In-Situ Chlorophyll Sensors
Alternate Identifier:DOI PLACE HOLDER
Abstract:

We monitored suspended chlorophyll concentration and turbidity during 48 storm events at two locations with contrasting hydraulic storage caused by milldams between the sites. Our study provides 15-min interval data on river flow, temperature, turbidity and chlorophyll-a concentration for each one of these events. These data have undergone a QA/QC process in which fouling drift was corrected by applying an offset linear interpolation before and after cleaning, and a discrete analytical correction was also applied based on extracted-chlorophyll analysis from grab samples. The dataset is provided in a wide csv format with one parameter per column.

Publication Date:2021-08-30

Time Period
Begin:
2019-04-01
End:
2020-12-25

People and Organizations
Contact:Peipoch, Marc (Stroud Water Research Center, Assistant Research Scientist) [  email ]
Creator:Peipoch, Marc (Stroud Water Research Center, Assistant Research Scientist)
Creator:Ensign, Scott H (Stroud Water Research Center, Research Scientist)

Data Entities
Data Table Name:
dissoxy
Description:
This dataset includes dissolved oxygen concentration and water temperature data at 15-min interval at each one of the two locations during both baseflow and stormflow conditions.
Data Table Name:
stormdata
Description:
This dataset includes chlorophyll-a concentration, turbidity, discharge, and water temperature data at 15-min interval for each monitored storm event at each one of the two locations.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/973/1/1c6f97dadc6bf7aeff6421496f502c04
Name:dissoxy
Description:This dataset includes dissolved oxygen concentration and water temperature data at 15-min interval at each one of the two locations during both baseflow and stormflow conditions.
Number of Records:136402
Number of Columns:9

Table Structure
Object Name:dissoxy.csv
Size:6409288 byte
Authentication:ea55daff29c4771e495f44289577dcc6 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 sitedatetimeDOTempQ_USGSDO_USGSTemp_USGSpar
Column Name:site  
date  
time  
DO  
Temp  
Q_USGS  
DO_USGS  
Temp_USGS  
par  
Definition:Categorical variable describing the site of data collectionDateTime of the dayDissolved oxygen concentrationWater temperatureStream flowDissolved oxygen concentrationWater temperaturePhotosynthetic Active Radiation
Storage Type:string  
dateTime  
dateTime  
float  
float  
float  
float  
float  
float  
Measurement Type:nominaldateTimedateTimeratioratioratioratioratioratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBAM
Definitionupstream
Source
Code Definition
CodeWILMA
Definitiondownstream
Source
Formatm/d/yyyy
Precision
Formath:mm:ss
Precision
UnitmilligramPerLiter
Typereal
Unitcelsius
Typereal
UnitfootCubedPerSecond
Typereal
UnitmilligramPerLiter
Typereal
Unitcelsius
Typereal
UnitmicromolePerMeterSquaredPerSecond
Typereal
Missing Value Code:  
CodeNA
ExplValue is missing
 
CodeNA
ExplValue is missing
CodeNA
ExplValue is missing
CodeNA
ExplValue is missing
CodeNA
ExplValue is missing
CodeNA
ExplValue is missing
CodeNA
ExplValue is missing
Accuracy Report:                  
Accuracy Assessment:                  
Coverage:                  
Methods:                  

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/973/1/0c542d0a134e1c94946fcdbe215dfeff
Name:stormdata
Description:This dataset includes chlorophyll-a concentration, turbidity, discharge, and water temperature data at 15-min interval for each monitored storm event at each one of the two locations.
Number of Records:13404
Number of Columns:7

Table Structure
Object Name:stormdata.csv
Size:665187 byte
Authentication:e27e12423bfc8f29ca2cc4b840cce27e Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 sitedatetimeQ_USGSTurb_USGSChlTemp
Column Name:site  
date  
time  
Q_USGS  
Turb_USGS  
Chl  
Temp  
Definition:Categorical variable describing the site of data collectionDate of the eventTime of the dayStream flowTurbidityChlorophyll-a concentrationWater temperature
Storage Type:string  
dateTime  
dateTime  
float  
float  
float  
float  
Measurement Type:nominaldateTimedateTimeratioratioratioratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBAM
Definitionupstream
Source
Code Definition
CodeWILMA
Definitiondownstream
Source
Formatm/d/yyyy
Precision
Formath:mm:ss
Precision
UnitfootCubedPerSecond
Typeinteger
UnitformazinNephelometricUnits
Typereal
UnitmicrogramPerLiter
Typereal
Unitcelsius
Typereal
Missing Value Code:              
Accuracy Report:              
Accuracy Assessment:              
Coverage:              
Methods:              

Data Package Usage Rights

This data package is released to the "public domain" under Creative Commons CC0 1.0 "No Rights Reserved" (see: https://creativecommons.org/publicdomain/zero/1.0/). It is considered professional etiquette to provide attribution of the original work if this data package is shared in whole or by individual components. A generic citation is provided for this data package on the website https://portal.edirepository.org (herein "website") in the summary metadata page. Communication (and collaboration) with the creators of this data package is recommended to prevent duplicate research or publication. This data package (and its components) is made available "as is" and with no warranty of accuracy or fitness for use. The creators of this data package and the website shall not be liable for any damages resulting from misinterpretation or misuse of the data package or its components. Periodic updates of this data package may be available from the website. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularyrivers, phytoplankton, chlorophyll
(No thesaurus)storm, hysteresis

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

At each site we installed an autonomous logger (miniDOT; PME) for dissolved oxygen and temperature measurements and a submersible fluorescence sensor (Cyclops 7-F; Turner Designs) calibrated for the detection of suspended Chlorophyll-a concentration [Chl-a]. We installed both sensors at UPSite and DWSite on March-2019 and June-2019, respectively, and set them up to record at a 5-min interval. Fluorometers were periodically cleaned and recalibrated in-situ (usually every 2 weeks). We occasionally collected a 1 L water sample to analyze acetone-extractable [Chl-a] in the laboratory following standard methods (and using an AU-10 fluorometer (Turner Designs) in the laboratory.

For each event, Chl-a and DO data were paired with discharge and turbidity data from corresponding USGS sites at 15-min intervals. We estimated hysteresis and flushing indices for both Chl-a and turbidity data. First, concentration (as Chl-a or turbidity) values, i, for each stormflow event were normalized (xi - xmin/(xmax -xmin) to allow comparisons among sites and dates, interpolated by linear regression at 1% intervals, j, of normalized discharge using two adjacent measurements. The hysteresis index (HI) at each discharge interval is determined by simple subtraction of corresponding interpolated values in the falling (Ci,fall) and rising (Ci,rise) limb. Stormflow HI represents the average of HIj values and varies from -1 to 1. Then, we calculated the flushing index (FI) as the slope between concentration (as Chl-a or turbidity) prior the storm and at the peak flow.

Description:

Discharge, turbidity, and dissolved oxygen (when data from our sensors was missing or compromised) was obtained from USGS gaging stations indicated above and did not receive any further QA/QC processing by the authors.

For chlorophyll-a, we in-situ fluorometers at both locations and set them up to record at a 5-min interval. Fluorometers were periodically cleaned and recalibrated in-situ (usually every 2 weeks) using standard solutions from the manufacturer. In additional, we occasionally collected a 1 L water sample to analyze acetone-extractable [Chl-a] in the laboratory following standard methods and used the acetone-extractable [Chl-a] value obtained to correct the sensor output. However, [Chl-a] values from pre-corrected sensor output and acetone-extractable [Chla-a] were highly correlated with an RMSE of 0.39 and 0.45 µg/L at the upstream and downstream sites, respectively.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Creators:
Individual: Marc Peipoch
Organization:Stroud Water Research Center
Position:Assistant Research Scientist
Address:
970 Spencer Rd,
Avondale, PA 19311 USA
Email Address:
mpeipoch@stroudcenter.org
Id:https://orcid.org/0000-0002-5943-831X
Individual: Scott H Ensign
Organization:Stroud Water Research Center
Position:Research Scientist
Address:
970 Spencer Rd,
Avondale, PA 19311 United States
Email Address:
ensign@stroudcenter.org
Id:https://orcid.org/0000-0002-1490-4751
Contacts:
Individual: Marc Peipoch
Organization:Stroud Water Research Center
Position:Assistant Research Scientist
Address:
970 Spencer Rd,
Avondale, PA 19311 United States
Email Address:
mpeipoch@stroudcenter.org
Id:https://orcid.org/0000-0002-5943-831X
Metadata Providers:
Individual: Charles Dow
Organization:Stroud Water Research Center
Address:
970 Spencer Rd,
Avondale, PA 19311 United States
Email Address:
cdow@stroudcenter.org

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2019-04-01
End:
2020-12-25
Sampling Site: 
Description:We monitored high flow events at two locations in the lower part of the Brandywine Creek (southeastern PA). Our upstream site was located at the border of the Piedmont plateau (39.869750, -75. 593357) and is adjacent to the USGS gage number 01481000. Our downstream site (39.760074, -75.556530) was located only 2.5-km downstream of the USGS gage number 01481500
Site Coordinates:
Longitude (degree): -75.55653Latitude (degree): 39.760074
Sampling Site: 
Description:We monitored high flow events at two locations in the lower part of the Brandywine Creek (southeastern PA). Our upstream site was located at the border of the Piedmont plateau (39.869750, -75. 593357) and is adjacent to the USGS gage number 01481000. Our downstream site (39.760074, -75.556530) was located only 2.5-km downstream of the USGS gage number 01481500
Site Coordinates:
Longitude (degree): -75.55653Latitude (degree): 39.760074
Taxonomic Range:
Classification:
Rank Name:Species
Rank Value:Algae

Project

Parent Project Information:

Title:Deciphering the origin of riverine phytoplankton using in-situ chlorophyll sensors
Personnel:
Individual: Marc Peipoch
Organization:Stroud Water Research Center
Position:Assistant Research Scientist
Address:
970 Spencer Rd,
Avondale, PA 19311 United States
Email Address:
mpeipoch@stroudcenter.org
Id:https://orcid.org/0000-0002-5943-831X
Role:Principal Investigator
Individual: Scott H Ensign
Organization:Stroud Water Research Center
Position:Research Scientist
Address:
970 Spencer Rd,
Avondale, PA 19311 United States
Email Address:
ensign@stroudcenter.org
Id:https://orcid.org/0000-0002-1490-4751
Role:Principal Investigator
Abstract:

We monitored chlorophyll concentration and turbidity during high flow events at two locations in the lower part of the Brandywine Creek (southeastern PA). Our upstream site was located at the border of the Piedmont plateau and is adjacent to the USGS gage number 01481000. Our downstream site was located only 2.5-km downstream of the USGS gage number 01481500. We examined phytoplankton C-Q relationships in these two locations with similar discharge but contrasting hydraulic geometry due to the presence of several low-head dams (~1 dam per river km) in between these two locations. In addition, we also estimated rates of primary production and respiration prior to storm events at the upstream location using dissolved oxygen and temperature data collected at each one of these two sites and water depth data measured at the USGS 01481000 station.

Additional Award Information:
Funder:Stroud Water Research Center
Title:Marc Peipoch, research endowment
Additional Award Information:
Funder:National Science Foundation
Number:HS-1929750
Title:Low-head milldams as hotspots for denitrification and nitrogen consumption: Hydrologic and biogeochemical controls
Additional Award Information:
Funder:US Department of Agriculture
Number:202-67019-31024
Title:Biological nitrogen removal in sediment plumes - a critical but missing component of watershed models

Maintenance

Maintenance:
Description:

We manually delineated stormflow events by assuming that an event starts when discharge first rises and ends when discharge returns to pre-storm baseflow values or when another stormflow event begins. We processed all sensor data (Chl-a and Dissolved Oxygen [DO]) using the same quality assurance and control protocol consisting of outlier removal, fouling drift correction (as offset with linear interpolation between cleanings), calibration adjustments (as a discrete analytical correction using the value obtained from extracted-chlorophyll analysis in the laboratory on grab samples collected next to each chlorophyll sensor), and data gap filling (not more than two consecutive missing 15-min interval).

Frequency:
Other Metadata

Additional Metadata

additionalMetadata
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        |     |     |     |  \___attribute 'name' = 'formazinNephelometricUnits'
        |     |     |     |___text '\n          '
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        |     |     |     |     |___text 'FNU'
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Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'emlEditor'
        |     |        \___attribute 'app' = 'ezEML'
        |     |        \___attribute 'release' = '2021.08.25'
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