Data Package Metadata   View Summary

Radiocarbon and stable carbon isotopes of CO2 produced from photomineralization of DOC leached from permafrost soils collected from the North Slope of Alaska in the summer of 2018

General Information
Data Package:
Local Identifier:knb-lter-arc.20099.1
Title:Radiocarbon and stable carbon isotopes of CO2 produced from photomineralization of DOC leached from permafrost soils collected from the North Slope of Alaska in the summer of 2018
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Dissolved organic carbon (DOC) was leached from permafrost soils near the Toolik Field Station in the Alaskan Arctic and then characterized for its photochemical properties.  The radiocarbon (14C) and stable carbon (13C) isotopic compositions of carbon dioxide (CO2) photochemically produced from permafrost DOC were quantified. 

Short Name:Permafrost_DIC_carbon_isotopes
Publication Date:2020
Language:English

Time Period
Begin:
2018-06-05
End:
2019-04-30

People and Organizations
Contact:Cory, Rose (University of Michigan) [  email ]
Creator:Cory, Rose (University of Michigan)
Creator:Bowen, Jennifer (University of Michigan)
Creator:Ward, Collin (Woods Hole Oceanographic Institute)
Creator:Kling, George (University of Michigan)

Data Entities
Data Table Name:
Permafrost_DIC_carbon_isotopes_csv
Description:
Radiocarbon and stable carbon isotopes of CO2 produced from photomineralization of DOC leached from permafrost soils collected from the North Slope of Alaska in the summer of 2018
Other Name:
Permafrost_DIC_carbon_isotopes_excel
Description:
Excel file with metadata and dataRadiocarbon and stable carbon isotopes of CO2 produced from photomineralization of DOC leached from permafrost soils collected from the North Slope of Alaska in the summer of 2018
Detailed Metadata

Data Entities


Data Table

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Name:Permafrost_DIC_carbon_isotopes_csv
Description:Radiocarbon and stable carbon isotopes of CO2 produced from photomineralization of DOC leached from permafrost soils collected from the North Slope of Alaska in the summer of 2018
Number of Records:8
Number of Columns:25

Table Structure
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Table Column Descriptions
 SortChemSiteDateTime_hr_dstDepth_mDistance_kmElevation_mTemp_CCond_uSpHLight_sourcewavelengthlight_timeDIC_dark_averageDIC_dark_std_errorΔ14C_DIC_dark_averageΔ14C_DIC_dark_std_errorδ13C_DIC_dark_averageδ13C_DIC_dark_std_errorDIC_light_averageDIC_light_std_errorΔ14C_DIC_light_averageΔ14C_DIC_light_std_errorδ13C_DIC_light_averageδ13C_DIC_light_std_error
Column Name:SortChem  
Site  
Date  
Time_hr_dst  
Depth_m  
Distance_km  
Elevation_m  
Temp_C  
Cond_uS  
pH  
Light_source  
wavelength  
light_time  
DIC_dark_average  
DIC_dark_std_error  
Δ14C_DIC_dark_average  
Δ14C_DIC_dark_std_error  
δ13C_DIC_dark_average  
δ13C_DIC_dark_std_error  
DIC_light_average  
DIC_light_std_error  
Δ14C_DIC_light_average  
Δ14C_DIC_light_std_error  
δ13C_DIC_light_average  
δ13C_DIC_light_std_error  
Definition:A unique number assigned to each sample collected at a specific site at a specific date and time. The year that the sample was collected is followed by a dash and then a sequential number. For example, if 600 samples were collected in 2002, then the first sample collected is 2002-0001 and the last sample is 2002-0600.Site Name. If a soil site, the site is described in the name by general location then specific feature (e.g., watertrack) then specific sampling point (1,2,3,...). Lake and stream sites use common names (e.g., Toolik) or LTER number codes. Exceptions in naming procedure are provided in the Code Information and in the AK-LTER_Site_Info.xls file.Sampling DateSampling Time in Alaska Daylight Savings Time (1 hour ahead of Alaska Standard Time: if 13:00 DST than 12:00 AST)Depth from surface of lake, stream, or soil, or a description of location such as "meta" for metalimnion.Distance along a stream where negative values are upstream of a designated starting point and positive values are downstream of the designated starting point. For soil sites, the distance is the perpendicular distance from the river or lake shore. Can include a text description.Elevation above sea levelSample water temperature, deg CElectrical conductivity of the water samplepH (opposite of the log of the molar hydrogen ion concentration)Source of light used to measure carbon isotopes of DICWavelength of light used to measure carbon isotopes of DICTime samples exposed to light to measure carbon isotopes of DICAverage DIC concentration in the dark control water in micromolePerLiterStandard error DIC concentration in the dark control water in micromolePerLiterAverage Δ14C of DIC in the dark control water in permil (‰)Standard error Δ14C of DIC in the dark control water in permil (‰)Average δ13C of DIC in the dark control water in permil (‰)Standard error δ13C of DIC in the dark control water in permil (‰)Average DIC concentration in the light-exposed water in micromolePerLiterStandard error DIC concentration in the light-exposed water in micromolePerLiterAverage Δ14C of DIC in the light-exposed water in permil (‰)Standard error Δ14C of DIC in the light-exposed water in permil (‰)Average δ13C of DIC in the light-exposed water in permil (‰)Standard error δ13C of DIC in the light-exposed water in permil (‰)
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Measurement Values Domain:
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DefinitionSite Name. If a soil site, the site is described in the name by general location then specific feature (e.g., watertrack) then specific sampling point (1,2,3,...). Lake and stream sites use common names (e.g., Toolik) or LTER number codes. Exceptions in naming procedure are provided in the Code Information and in the AK-LTER_Site_Info.xls file.
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Precision
Formathh:mm
Precision
DefinitionDepth from surface of lake, stream, or soil, or a description of location such as "meta" for metalimnion.
DefinitionDistance along a stream where negative values are upstream of a designated starting point and positive values are downstream of the designated starting point. For soil sites, the distance is the perpendicular distance from the river or lake shore. Can include a text description.
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Unitcelsius
Typereal
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UnitmicrosiemenPerCentimeter
Typereal
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Max29.0 
Unitnumber
Typereal
Min5.84 
Max5.99 
DefinitionSource of light used to measure carbon isotopes of DIC
Unitnanometer
Typereal
Min309.00 
Max406.00 
Unithour
Typereal
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Max14.00 
UnitmicromolePerLiter
Typereal
Min40.93 
Max61.21 
UnitmicromolePerLiter
Typereal
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Max1.62 
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Accuracy Assessment:                                                  
Coverage:                                                  
Methods:                                                  

Non-Categorized Data Resource

Name:Permafrost_DIC_carbon_isotopes_excel
Entity Type:document
Description:Excel file with metadata and dataRadiocarbon and stable carbon isotopes of CO2 produced from photomineralization of DOC leached from permafrost soils collected from the North Slope of Alaska in the summer of 2018
Physical Structure Description:
Object Name:Permafrost_DIC_carbon_isotopes.xlsx
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Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-arc/20099/1/7be7150495842b487c5c14d1e91defec

Data Package Usage Rights

Data Policies

This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

The re-use of scientific data has the potential to greatly increase communication, collaboration and synthesis within and among disciplines, and thus is fostered, supported and encouraged. Permission to use this dataset is granted to the Data User free of charge subject to the following terms:

  • Citation. It is considered a matter of professional ethics to acknowledge the work of other scientists. Thus, the Data User should properly cite the Data Set in any publications or in the metadata of any derived data products that were produced using the Data Set.
  • Acknowledgement. The Data User should acknowledge any institutional support or specific funding awards referenced in the metadata accompanying this dataset in any publications where the Data Set contributed significantly to its content. Acknowledgements should identify the supporting party, the party that received the support, and any identifying information such as grant numbers. For example: Data sets were provided by the Arctic LTER. This material is based upon work supported by the National Science Foundation under Grants #ARC-1107593, 1107707, 0632139 and #DEB-1026843.
  • Notification. The Data User will notify the Data Set Contact when any derivative work or publication based on or derived from the Data Set is distributed. The Data User will provide the data contact with two reprints of any publications resulting from use of the Data Set and will provide copies, or online access to, any derived digital products. Notification will include an explanation of how the Data Set was used to produce the derived work.
  • Collaboration. The Data Set has been released in the spirit of open scientific collaboration. Data Users are thus strongly encouraged to consider consultation, collaboration and/or co-authorship with the Data Set Creator.
  • Disclaimer. While substantial efforts are made to ensure the accuracy of data and documentation contained in this Data Set, complete accuracy of data and metadata cannot be guaranteed. All data and metadata are made available "as is". The Data User holds all parties involved in the production or distribution of the Data Set harmless for damages resulting from its use or interpretation.

Keywords

By Thesaurus:
Core Areasorganic matter, inorganic nutrients
LTER Controlled Vocabularycarbon, dissolved organic carbon, permafrost, ph, temperature, conductivity, inorganic nutrients, isotopes, organic matter
Arctic LTER Vocabularyarctic soils, radiocarbon age, photomineralization

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Soils were collected from the frozen permafrost layer (> 60 cm below the surface) at four sites underlying moist acidic tussock or wet sedge vegetation, and on three glacial surfaces on the North Slope of Alaska during summer 2018.  Soil cores were collected at Imnavait wet sedge tundra using a SIPRE corer, and the permafrost layer (1.0 – 1.3 m below the surface) was separated from the soil core using a knife.  At the other three sites, 1 m x 1 m x 1 m soil pits were excavated using a jack hammer, shovels, and pickaxe.  Soil sampling at each site took place over the course of one day.  From each site, an equal mass of soil (~2.5 kg) was placed in four Ziploc bags (1 gallon) and then each soil sample was quintuple-bagged.  Following collection, soil samples were immediately transferred to coolers in the field and then stored in freezers at the Toolik Field Station for ≤ 4 weeks until overnight shipment on dry ice to the Woods Hole Oceanographic Institution (WHOI).  All soil samples were frozen upon arrival at WHOI and immediately placed into freezers until leachate preparation.
Dissolved organic carbon (DOC) was leached from each permafrost soil at WHOI as described in the following five steps.  First, frozen soil in one or two Ziploc bags was broken into smaller pieces inside the bag using a clean chisel.  Second, 0.8 to 3.3 kg of frozen soil was transferred to a new Ziploc bag (1 gallon) and then thawed in a chest cooler at 4 °C for up to 20 hours.  Third, the thawed permafrost soil was added to five liters of MilliQ water (Millipore Simplicity ultraviolet, UV, system) in a MilliQ-rinsed high density polyethylene (HDPE) bucket (5 gallon).  Each bucket was covered with a HDPE lid and allowed to leach at 4 °C for 24 hours.  Fourth, the permafrost leachate was filtered through a sieve with 60 mm nylon mesh screening (Component Supply) into a new, MilliQ-rinsed 5 gallon HDPE bucket and then placed in the chest cooler at 4 °C for ≤ 1 day to allow suspended particles to settle before additional filtration.  Fifth, the 60-mm filtered leachate was filtered through 10 mm (Geotech Environmental Equipment, Inc.) and then finally through 0.2 mm (Whatman), MilliQ-rinsed high-capacity cartridge filters.  Four liters of the final 0.2-mm filtered permafrost leachate (now referred to as permafrost leachate) were then transferred to a precombusted (450 °C; 4 h) 4 L glass amber bottle and kept at 4 °C prior to light exposure experiments. 
The radiocarbon (14C) and stable carbon (13C) isotopic compositions of dissolved inorganic carbon (DIC) produced following exposure of DOC to UV and visible light were quantified for each permafrost leachate at WHOI.  Each permafrost leachate was equilibrated to room temperature and then placed in up to four precombusted (450 °C; 4 hrs) 600 mL quartz flasks with ground glass stoppers and no headspace.  The flasks were exposed to custom-built light-emitting diode (LED) arrays consisting of ten high-powered (≥ 100 mW), narrow-banded (± 10 nm) 309 or 406 nm chips alongside one or two foil-wrapped dark control flasks.  Exposure times ranged from 8 to 25 hours to achieve similar concentrations of DIC produced from each permafrost DOC sample and at each wavelength.  After LED exposure, foil-wrapped light-exposed and dark control flasks were immediately transferred to foil-wrapped, precombusted 500 mL borosilicate glass bottles (450 °C; 4 hrs) in a N2-filled glove bag, preserved with saturated mercuric chloride, and plugged with gas-tight ground glass stoppers (McNichol et al., 1994).  Those bottles were stored in the dark at room temperature for ≤ 1 week until preparation for carbon isotope analyses at the National Ocean Sciences Accelerator Mass Spectrometry (NOSAMS) facility at WHOI (McNichol et al., 1994).  Bottles were kept foil-wrapped while each water sample was acidified with trace-metal grade phosphoric acid (85%) to pH < 2 and stripped of DIC with high-purity N2 gas.  The resultant carbon dioxide (CO2) was trapped and purified cryogenically, and then its concentration was quantified manometrically.  A subsample of the CO2 was analyzed for 13C using a VG Prism-II or Optima stable isotope ratio mass spectrometer (instrumental precision of 0.1‰; Coplen et al., 2006), and the δ13C (‰) was calculated as follows:
δ13C = (13Rsample/13Rstandard – 1)
where 13R is the isotope ratio of a sample or standard (VPDB), as defined by:
13R = (13C/12C)
The remaining CO2 was reduced to graphite with H2 and an iron catalyst, and then analyzed for 14C isotopic composition using an accelerator mass spectrometer at the NOSAMS facility (Longworth et al., 2015).  The Δ14C (‰) of DIC was calculated from the fraction modern as previously described (Stuiver & Polach, 1977; McNichol et al., 2001) using the oxalic acid I standard (NIST-SRM 4990).  Δ14C analyses of DIC had an instrumental precision of 1-2‰ (Longworth et al., 2015; McNichol et al., 2001). 
The Δ14C and δ13C of CO2 produced from the photomineralization of DOC were calculated as follows:
Δ14C-CO2 λ = [(Δ14C-DICLight,λ * [DIC]Light,λ) – (Δ14C-DICDark * [DIC]Dark)] / ([DIC]Light,λ – [DIC]Dark)
δ13C-CO2 λ = [(δ13C-DICLight,λ * [DIC]Light,λ) – (δ13C-DICDark * [DIC]Dark)] / ([DIC]Light,λ – [DIC]Dark)
The Δ14C and δ13C of CO2 produced in each light-exposed flask were calculated relative to one or two dark controls and are reported as the average ± 1 standard error (SE) of replicate values for the experiments conducted alongside two dark controls.  The concentration, Δ14C, and δ13C of DIC in the dark controls are reported as the average ± 1 SE of replicate flasks (n = 2).  This approach to quantify the Δ14C and δ13C of CO2 produced from photomineralization of organic carbon was previously described in detail for polystyrene (Ward et al., 2019).  In this previous study, experimental reproducibility of Δ14C and δ13C of CO2 produced from photomineralization was 5‰ and 0.1‰, respectively (± 1 SE; n = 3).
References: 
Bowen, J. C.,  C. P. Ward, G. W. Kling, R. M. Cory..  Arctic amplification of global warming strengthened by sunlight oxidation of permafrost carbon to CO2.    In review.
Coplen, T. B., W. A. Brand, M. Gehre, M. Gröning, H. A. J. Meijer, B. Toman, R. M. Verkouteren.  2006.  New guidelines for δ13C measurements.  Anal. Chem., 10.1021/ac052027c
Longworth, B. E., K. F. von Reden, P. Long, M. L. Roberts.  2015.  A high output, large acceptance injector for the NOSAMS Tandetron AMS system.  Nucl. Instr. Meth. Phys. Res. B, 10.1016/j.nimb.2015.04.005
McNichol, A. P., G. A. Jones, D. L. Hutton, A. R. Gagon.  1994.  The rapid preparation of seawater ΣCO2 for radiocarbon analysis at the National Ocean Sciences AMS facility. Radiocarbon, 10.1017/S0033822200040522
McNichol, A. P., A. J. T. Jull, G. S. Burr.  2001.  Converting AMS data to radiocarbon values: Considerations and conventions.  Radiocarbon, 10.1017/S0033822200038169
Stuiver, M., H. A. Polach.  1977.  Discussion: Reporting of 14C data.  Radiocarbon, 10.1017/S0033822200003672
Ward, C. P., C. J. Armstrong, A. N. Walsh, J. J. Jackson, C. M. Reddy.  2019.  Sunlight converts polystyrene into carbon dioxide and dissolved organic carbon. Environ. Sci. Technol. Lett., 10.1021/acs.estlett.9b00532

People and Organizations

Publishers:
Individual: Arctic LTER publisher
Address:
7 M B L St.,
Woods Hole, MA 02536 US
Email Address:
arc_im@mbl.edu
Creators:
Individual: Rose Cory
Organization:University of Michigan
Address:
University of Michigan,Department of Earth and Environmental Sciences,1100 North University Ave,
Ann Arbor, MI 48109 US
Email Address:
rmcory@umich.edu
Id:https://orcid.org/0000-0001-9867-7084
Individual: Jennifer Bowen
Organization:University of Michigan
Address:
Department of Earth and Environmental Sciences, 1100 North University Ave.,
Ann Arbor, MI 48109 US
Email Address:
bowenjc@umich.edu
Id:https://orcid.org/0000-0002-3085-3229
Individual: Collin Ward
Organization:Woods Hole Oceanographic Institute
Address:
Department of Marine Chemistry and Geochemistry, 266 Woods Hole Rd.,
Woods Hole, MA 02543 US
Email Address:
cward@whoi.edu
Id:https://orcid.org/0000-0003-2979-0280
Individual: George Kling
Organization:University of Michigan
Address:
University of Michigan,Department of Ecology and Evolutionary Biology,830 North University,
Ann Arbor, MI 48109-1048 US
Email Address:
gwk@umich.edu
Id:https://orcid.org/0000-0002-6349-8227
Contacts:
Individual: Rose Cory
Organization:University of Michigan
Address:
University of Michigan,Department of Earth and Environmental Sciences,1100 North University Ave,
Ann Arbor, MI 48109 US
Email Address:
rmcory@umich.edu
Id:https://orcid.org/0000-0001-9867-7084
Metadata Providers:
Organization:Arctic Long Term Ecological Research
Web Address:
http://arc.lternet.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2018-06-05
End:
2019-04-30
Sampling Site: 
Description:Toolik moist acidic tundra soil pit 2018: Soil pits south of Toolik Lake, North Slope of Alaska
Site Coordinates:
Longitude (degree): -149.615Latitude (degree): 68.6212
Sampling Site: 
Description:Imnavait moist acidic tundra soil pit 2018: Soil pits in Imnavait Creek basin, North Slope of Alaska
Site Coordinates:
Longitude (degree): -149.308Latitude (degree): 68.6098
Sampling Site: 
Description:Imnavait wet sedge tundra soil pit 2018: Soil pits in wet sedge, Imnavait Creek basin, North Slope of Alaska
Site Coordinates:
Longitude (degree): -149.313Latitude (degree): 68.6089
Sampling Site: 
Description:Sagwon wet sedge tundra soil pit 2018: Soil pits in wet sedge near Sagwon Bluffs, North Slope of Alaska
Site Coordinates:
Longitude (degree): -148.756Latitude (degree): 69.3441

Project

Parent Project Information:

Title:Arctic Photo-Bio Photochemistry
Personnel:
Individual: Rose Cory
Organization:University of Michigan
Address:
University of Michigan,Department of Earth and Environmental Sciences,1100 North University Ave,
Ann Arbor, MI 48109 US
Email Address:
rmcory@umich.edu
Id:https://orcid.org/0000-0001-9867-7084
Role:principalInvestigator
Individual: George Kling
Organization:University of Michigan
Address:
University of Michigan,Department of Ecology and Evolutionary Biology,830 North University,
Ann Arbor, MI 48109-1048 US
Email Address:
gwk@umich.edu
Id:https://orcid.org/0000-0002-6349-8227
Role:principalInvestigator
Individual: Byron Crump
Organization:Oregon State University
Address:
College of Earth, Ocean, and Atmospheric Science, 104 CEOAS Admin Bldg,
Corvallis, OR 97331-5503 US
Email Address:
bcrump@coas.oregonstate.edu
Web Address:
http://people.oregonstate.edu/~crumpb/index.html
Id:http://orcid.org/0000-0001-7062-1273
Role:principalInvestigator
Abstract:

Collaborative proposal: Coupled biological and photochemical degradation of dissolved organic carbon in the Arctic

Funding:

1754835

1637459

1351745

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EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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