Data Package Metadata   View Summary

Radiocarbon and stable carbon isotope dataset for DOC leached from permafrost soils collected from the North Slope of Alaska summer 2018, 2019

General Information
Data Package:
Local Identifier:knb-lter-arc.20100.1
Title:Radiocarbon and stable carbon isotope dataset for DOC leached from permafrost soils collected from the North Slope of Alaska summer 2018, 2019
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Dissolved organic carbon (DOC) was leached from permafrost soils near the Toolik Field Station in the Alaskan Arctic.  The radiocarbon (14C) and stable carbon (13C) isotopic compositions of permafrost DOC were quantified. 

Short Name:Permafrost_DOC_carbon_isotopes
Publication Date:2020
Language:English

Time Period
Begin:
2018-06-05
End:
2019-04-30

People and Organizations
Contact:Cory, Rose (University of Michigan) [  email ]
Creator:Cory, Rose (University of Michigan)
Creator:Bowen, Jennifer (University of Michigan)
Creator:Ward, Collin (Woods Hole Oceanographic Institute)
Creator:Kling, George (University of Michigan)

Data Entities
Data Table Name:
Permafrost_DOC_carbon_isotopes_csv
Description:
Radiocarbon and stable carbon isotope dataset for DOC leached from permafrost soils collected from the North Slope of Alaska summer 2018, 2019   
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-arc/20100/1/2a3ae7ffcee6d9fa4f7e6dde1d026da0
Name:Permafrost_DOC_carbon_isotopes_csv
Description:Radiocarbon and stable carbon isotope dataset for DOC leached from permafrost soils collected from the North Slope of Alaska summer 2018, 2019   
Number of Records:4
Number of Columns:14

Table Structure
Object Name:Permafrost_DOC_carbon_isotopes.csv
Size:2735
Authentication:08214d51205f0a1920752596b8b41d14 Calculated By MD5
Authentication:1f4633e19cff19d923f5526e20a26f94b988607e Calculated By SHA-1
Text Format:
Number of Header Lines:4
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 SortChemSiteDateTime_hr_dstDepth_mDistance_kmElevation_mTemp_CCond_uSpHΔ14C_DOC_averageΔ14C_DOC_std_errorδ13C_DOC_averageδ13C_DOC_std_error
Column Name:SortChem  
Site  
Date  
Time_hr_dst  
Depth_m  
Distance_km  
Elevation_m  
Temp_C  
Cond_uS  
pH  
Δ14C_DOC_average  
Δ14C_DOC_std_error  
δ13C_DOC_average  
δ13C_DOC_std_error  
Definition:A unique number assigned to each sample collected at a specific site at a specific date and time. The year that the sample was collected is followed by a dash and then a sequential number. For example, if 600 samples were collected in 2002, then the first sample collected is 2002-0001 and the last sample is 2002-0600.Site Name. If a soil site, the site is described in the name by general location then specific feature (e.g., watertrack) then specific sampling point (1,2,3,...). Lake and stream sites use common names (e.g., Toolik) or LTER number codes. Exceptions in naming procedure are provided in the Code Information and in the AK-LTER_Site_Info.xls file.Sampling DateSampling Time in Alaska Daylight Savings Time (1 hour ahead of Alaska Standard Time: if 13:00 DST than 12:00 AST)Depth from surface of lake, stream, or soil, or a description of location such as "meta" for metalimnion.Distance along a stream where negative values are upstream of a designated starting point and positive values are downstream of the designated starting point. For soil sites, the distance is the perpendicular distance from the river or lake shore. Can include a text description.Elevation above sea levelSample water temperature, deg CElectrical conductivity of the water samplepH (opposite of the log of the molar hydrogen ion concentration)Average Δ14C of DOC in permil (‰)Standard error Δ14C of DOC in permil (‰)Average δ13C of DOC in permil (‰)Standard error δ13C of DOC in permil (‰)
Storage Type:string  
string  
date  
date  
string  
string  
               
Measurement Type:nominalnominaldateTimedateTimenominalnominalratioratioratioratioratioratioratioratio
Measurement Values Domain:
DefinitionA unique number assigned to each sample collected at a specific site at a specific date and time. The year that the sample was collected is followed by a dash and then a sequential number. For example, if 600 samples were collected in 2002, then the first sample collected is 2002-0001 and the last sample is 2002-0600.
DefinitionSite Name. If a soil site, the site is described in the name by general location then specific feature (e.g., watertrack) then specific sampling point (1,2,3,...). Lake and stream sites use common names (e.g., Toolik) or LTER number codes. Exceptions in naming procedure are provided in the Code Information and in the AK-LTER_Site_Info.xls file.
FormatYYYY-MM-DD
Precision
Formathh:mm
Precision
DefinitionDepth from surface of lake, stream, or soil, or a description of location such as "meta" for metalimnion.
DefinitionDistance along a stream where negative values are upstream of a designated starting point and positive values are downstream of the designated starting point. For soil sites, the distance is the perpendicular distance from the river or lake shore. Can include a text description.
Unitmeter
Typereal
Min
Max
Unitcelsius
Typereal
Min
Max
UnitmicrosiemenPerCentimeter
Typereal
Min12 
Max51 
Unitnumber
Typereal
Min5.99 
Max7.22 
UnitpartPerThousand
Typereal
Min-585 
Max-411 
UnitpartPerThousand
Typereal
Min
Max
UnitpartPerThousand
Typereal
Min-27.8 
Max-25.4 
UnitpartPerThousand
Typereal
Min0.0 
Max0.0 
Missing Value Code:    
Code.
ExplMissing values
Code.
ExplMissing values
   
Code.
ExplMissing values
Code.
ExplMissing values
Code.
ExplMissing values
Code.
ExplMissing values
Code.
ExplMissing values
Code.
ExplMissing values
Code.
ExplMissing values
Code.
ExplMissing values
Accuracy Report:                            
Accuracy Assessment:                            
Coverage:                            
Methods:                            

Data Package Usage Rights

Data Policies

This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

The re-use of scientific data has the potential to greatly increase communication, collaboration and synthesis within and among disciplines, and thus is fostered, supported and encouraged. Permission to use this dataset is granted to the Data User free of charge subject to the following terms:

  • Citation. It is considered a matter of professional ethics to acknowledge the work of other scientists. Thus, the Data User should properly cite the Data Set in any publications or in the metadata of any derived data products that were produced using the Data Set.
  • Acknowledgement. The Data User should acknowledge any institutional support or specific funding awards referenced in the metadata accompanying this dataset in any publications where the Data Set contributed significantly to its content. Acknowledgements should identify the supporting party, the party that received the support, and any identifying information such as grant numbers. For example: Data sets were provided by the Arctic LTER. This material is based upon work supported by the National Science Foundation under Grants #ARC-1107593, 1107707, 0632139 and #DEB-1026843.
  • Notification. The Data User will notify the Data Set Contact when any derivative work or publication based on or derived from the Data Set is distributed. The Data User will provide the data contact with two reprints of any publications resulting from use of the Data Set and will provide copies, or online access to, any derived digital products. Notification will include an explanation of how the Data Set was used to produce the derived work.
  • Collaboration. The Data Set has been released in the spirit of open scientific collaboration. Data Users are thus strongly encouraged to consider consultation, collaboration and/or co-authorship with the Data Set Creator.
  • Disclaimer. While substantial efforts are made to ensure the accuracy of data and documentation contained in this Data Set, complete accuracy of data and metadata cannot be guaranteed. All data and metadata are made available "as is". The Data User holds all parties involved in the production or distribution of the Data Set harmless for damages resulting from its use or interpretation.

Keywords

By Thesaurus:
Core Areasorganic matter
LTER Controlled Vocabularycarbon, dissolved organic carbon, permafrost, ph, temperature, conductivity, isotopes
Arctic LTER Vocabularyarctic soils, radiocarbon age, organic nutrients

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Soils were collected from the frozen permafrost layer (> 60 cm below the surface) at five sites underlying moist acidic tussock or wet sedge vegetation, and on three glacial surfaces on the North Slope of Alaska during summer 2018.  Soil cores were collected at Imnavait wet sedge tundra using a SIPRE corer, and the permafrost layer (1.0 – 1.3 m below the surface) was separated from the soil core using a knife.  At the other four sites, 1 m x 1 m x 1 m soil pits were excavated using a jack hammer, shovels, and pickaxe.  Soil sampling at each site took place over the course of one day.  From each site, an equal mass of soil (~2.5 kg) was placed in four Ziploc bags (1 gallon) and then each soil sample was quintuple-bagged.  Following collection, soil samples were immediately transferred to coolers in the field and then stored in freezers at the Toolik Field Station for ≤ 4 weeks until overnight shipment on dry ice to the Woods Hole Oceanographic Institution (WHOI).  All soil samples were frozen upon arrival at WHOI and immediately placed into freezers until leachate preparation.

Dissolved organic carbon (DOC) was leached from each permafrost soil at WHOI as described in the following five steps.  First, frozen soil in one or two Ziploc bags was broken into smaller pieces inside the bag using a clean chisel.  Second, 0.8 to 3.3 kg of frozen soil was transferred to a new Ziploc bag (1 gallon) and then thawed in a chest cooler at 4 °C for up to 20 hours.  Third, the thawed permafrost soil was added to five liters of MilliQ water (Millipore Simplicity ultraviolet, UV, system) in a MilliQ-rinsed high density polyethylene (HDPE) bucket (5 gallon).  Each bucket was covered with a HDPE lid and allowed to leach at 4 °C for 24 hours.  Fourth, the permafrost leachate was filtered through a sieve with 60 mm nylon mesh screening (Component Supply) into a new, MilliQ-rinsed 5 gallon HDPE bucket and then placed in the chest cooler at 4 °C for ≤ 1 day to allow suspended particles to settle before additional filtration.  Fifth, the 60-mm filtered leachate was filtered through 10 mm (Geotech Environmental Equipment, Inc.) and then finally through 0.2 mm (Whatman), MilliQ-rinsed high-capacity cartridge filters.  Four liters of the final 0.2-mm filtered permafrost leachate (now referred to as permafrost leachate) were then transferred to a precombusted (450 °C; 4 h) 4 L glass amber bottle and kept at 4 °C prior to carbon isotope analyses.  

The radiocarbon (14C) and stable carbon (13C) isotopic compositions of DOC were analyzed from each permafrost leachate at the National Ocean Sciences Accelerator Mass Spectrometry (NOSAMS) facility at WHOI following Beaupré et al. (2007).  Each permafrost leachate was diluted with UVC-oxidized MilliQ water (1.5 hrs; 1200 W medium pressure mercury arc lamp) to achieve a total carbon (C) mass greater than 800 μg and less than 2000 μg.  The diluted permafrost leachate was acidified with UVC-oxidized trace-metal grade phosphoric acid (85%) to pH < 2 in a precombusted quartz reactor (450 °C; 4 hrs) and the dissolved inorganic carbon (DIC) was purged with high-purity helium gas in the dark.  The DOC was then oxidized with UVC light to DIC for 4 hours (1200 W medium pressure mercury arc lamp), and the resultant carbon dioxide (CO2) was extracted cryogenically (Beaupré et al., 2007).  On average, 1370 ± 240 μg of C were extracted cryogenically from each permafrost leachate (± 1 standard error, SE; n = 6).  A subsample of the CO2 was analyzed for 13C using a VG Prism-II or Optima stable isotope ratio mass spectrometer (instrumental precision of 0.1‰; Coplen et al., 2006), and the δ13C (‰) was calculated as follows:
δ13C = (13Rsample/13Rstandard – 1)
where 13R is the isotope ratio of a sample or standard (VPDB), as defined by:
13R = (13C/12C) 

The remaining CO2 was reduced to graphite with H2 and an iron catalyst, and then analyzed for 14C isotopic composition using an accelerator mass spectrometer at the NOSAMS facility (Longworth et al., 2015).  The Δ14C (‰) of DOC was calculated from the fraction modern as previously described (Stuiver & Polach, 1977; McNichol et al., 2001) using the oxalic acid I standard (NIST-SRM 4990).  Δ14C analyses of DOC had an instrumental precision of 2-6‰ (Longworth et al., 2015; McNichol et al., 2001).  

DOC leached from one permafrost soil (Toolik moist acidic tundra) was prepared and analyzed for 14C and 13C twice to quantify the standard error of duplicate analyses.  Δ14C and δ13C analyses of DOC had standard errors of 1‰ and 0.1‰, respectively (1 SE; n = 2).  A procedural blank was quantified by oxidizing MilliQ water with UVC light in a precombusted quartz reactor (450 °C; 4 hrs) for 1.5 hours, acidifying to pH < 2, and purging the DIC as described above.  Residual CO2 was extracted cryogenically and its concentration was quantified manometrically.  The procedural blank was 4 μg of C, which was < 0.5% of the total carbon masses extracted from the permafrost leachates.  When available, Δ14C and δ13C are reported as the average ± 1 SE of experimental replicates (n = 2).

References:  
Beaupré, S. R., E. R. M. Druffel, S. Griffin.  2007.  A low-blank photochemical extraction system for concentration and isotopic analyses of marine dissolved organic carbon.  Limnol. Oceanogr.: Methods, 10.4319/lom.2007.5.174
Bowen, J.C.,  C. P. Ward, G. W. Kling, R. M. Cory..  Arctic amplification of global warming strengthened by sunlight oxidation of permafrost carbon to CO2.    In review.
Coplen, T. B., W. A. Brand, M. Gehre, M. Gröning, H. A. J. Meijer, B. Toman, R. M. Verkouteren.  2006.  New guidelines for δ13C measurements.  Anal. Chem., 10.1021/ac052027c
Longworth, B. E., K. F. von Reden, P. Long, M. L. Roberts.  2015.  A high output, large acceptance injector for the NOSAMS Tandetron AMS system.  Nucl. Instr. Meth. Phys. Res. B, 10.1016/j.nimb.2015.04.005
McNichol, A. P., A. J. T. Jull, G. S. Burr.  2001.  Converting AMS data to radiocarbon values: Considerations and conventions.  Radiocarbon, 10.1017/S0033822200038169
Stuiver, M., H. A. Polach.  1977.  Discussion: Reporting of 14C data.  Radiocarbon, 10.1017/S0033822200003672

People and Organizations

Publishers:
Individual: Arctic LTER publisher
Address:
7 M B L St.,
Woods Hole, MA 02536 US
Email Address:
arc_im@mbl.edu
Creators:
Individual: Rose Cory
Organization:University of Michigan
Address:
University of Michigan,Department of Earth and Environmental Sciences,1100 North University Ave,
Ann Arbor, MI 48109 US
Email Address:
rmcory@umich.edu
Id:https://orcid.org/0000-0001-9867-7084
Individual: Jennifer Bowen
Organization:University of Michigan
Address:
Department of Earth and Environmental Sciences, 1100 North University Ave.,
Ann Arbor, MI 48109 US
Email Address:
bowenjc@umich.edu
Id:https://orcid.org/0000-0002-3085-3229
Individual: Collin Ward
Organization:Woods Hole Oceanographic Institute
Address:
Department of Marine Chemistry and Geochemistry, 266 Woods Hole Rd.,
Woods Hole, MA 02543 US
Email Address:
cward@whoi.edu
Id:https://orcid.org/0000-0003-2979-0280
Individual: George Kling
Organization:University of Michigan
Address:
University of Michigan,Department of Ecology and Evolutionary Biology,830 North University,
Ann Arbor, MI 48109-1048 US
Email Address:
gwk@umich.edu
Id:https://orcid.org/0000-0002-6349-8227
Contacts:
Individual: Rose Cory
Organization:University of Michigan
Address:
University of Michigan,Department of Earth and Environmental Sciences,1100 North University Ave,
Ann Arbor, MI 48109 US
Email Address:
rmcory@umich.edu
Id:https://orcid.org/0000-0001-9867-7084
Metadata Providers:
Organization:Arctic Long Term Ecological Research
Web Address:
http://arc.lternet.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2018-06-05
End:
2019-04-30
Sampling Site: 
Description:Toolik moist acidic tundra soil pits: Soil pits south of Toolik Lake, North Slope of Alaska
Site Coordinates:
Longitude (degree): -149.615Latitude (degree): 68.6212
Sampling Site: 
Description:Imnavait moist acidic tundra soil pits: Soil pits in Imnavait Creek basin, North Slope of Alaska
Site Coordinates:
Longitude (degree): -149.308Latitude (degree): 68.6098
Sampling Site: 
Description:Imnavait wet sedge tundra soil pits: Soil pits in wet sedge, Imnavait Creek basin, North Slope of Alaska
Site Coordinates:
Longitude (degree): -149.313Latitude (degree): 68.6089
Sampling Site: 
Description:Sagwon moist acidic tundra soil pits: Soil pits in moist acidic tundra near Sagwon Bluffs, North Slope of Alaska
Site Coordinates:
Longitude (degree): -148.759Latitude (degree): 69.3436
Sampling Site: 
Description:Sagwon wet sedge tundra soil pits: Soil pits in wet sedge near Sagwon Bluffs, North Slope of Alaska
Site Coordinates:
Longitude (degree): -148.756Latitude (degree): 69.3441

Project

Other Metadata

Additional Metadata

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