Data Package Metadata   View Summary

Daily water-column rates of sunlight absorption by chromophoric dissolved organic matter (CDOM) leached from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022

General Information
Data Package:
Local Identifier:knb-lter-arc.20152.5
Title:Daily water-column rates of sunlight absorption by chromophoric dissolved organic matter (CDOM) leached from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Dissolved organic carbon (DOC) was leached from permafrost soils near the Toolik Field Station in the Alaskan Arctic. Daily rates of sunlight absorption by chromophoric dissolved organic matter (CDOM) from the permafrost soil leachates over the water column depth of an arctic headwater stream were quantified.

Publication Date:2023-12-05
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2022-02-13
End:
2022-12-16

People and Organizations
Contact:Cory, Rose (University of Michigan) [  email ]
Contact:Rieb, Emma (University of Michigan) [  email ]
Contact:Polik, Catherine (University of Minnesota) [  email ]
Contact:Ward, Collin (Woods Hole Oceanographic Institution) [  email ]
Contact:Kling, George (University of Michigan) [  email ]
Contact:Information Manger (ARCTIC LTER) [  email ]
Creator:Cory, Rose (University of Michigan)
Creator:Rieb, Emma (University of Michigan)
Creator:Polik, Catherine (University of Minnesota)
Creator:Ward, Collin (Woods Hole Oceanographic Institution)
Creator:Kling, George (University of Michigan)

Data Entities
Data Table Name:
Permafrost_leachate_light_absorbed_csv
Description:
Daily water-column rates of sunlight absorption by chromophoric dissolved organic matter (CDOM) leached from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022
Other Name:
Permafrost_leachate_light_absorbed_xlsx
Description:
Excel file with metadata and data sheets: Daily water-column rates of sunlight absorption by chromophoric dissolved organic matter (CDOM) leached from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-arc/20152/5/e4e5f2c739e96d0d70af922c2748ce4f
Name:Permafrost_leachate_light_absorbed_csv
Description:Daily water-column rates of sunlight absorption by chromophoric dissolved organic matter (CDOM) leached from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022
Number of Records:4
Number of Columns:6

Table Structure
Object Name:Permafrost_leachate_light_absorbed.csv
Size:294 bytes
Authentication:936afcf9cb8e6794ac2212f679c50444 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:Sortchem  
Site  
Date  
UV_photons  
Vis_photons  
Max_wave  
Definition:A unique number assigned to each sample collected at a specific site at a specific date and time. The year that the sample was collected is followed by a dash and then a sequential number. For example, if 600 samples were collected in 2002, then the first sample collected is 2002-0001 and the last sample is 2002-0600.Site Name. If a soil site, the site is described in the name by general location then specific feature (e.g., watertrack) then specific sampling point (1,2,3,...). If multiple subsamples of an initial soil sample taken from the same specific sampling point are used, they are designated as by letter (A, B, C,...). Lake and stream sites use common names (e.g., Toolik) or LTER number codes. Exceptions in naming procedure are provided in the Code Information and in the AK-LTER_Site_Info.xls file.Soil sampling dateDaily water-column rate of UV sunlight (280 - 399 nm) absorbed by CDOM (molePhotonPerMeterSquaredPerDay)Daily water-column rate of visible sunlight (400 - 700 nm) absorbed by CDOM (molePhotonPerMeterSquaredPerDay)Wavelength of sunlight at which the maximum water-column rate of light absorption by CDOM occurs (nanometers)
Storage Type:string  
string  
date  
float  
float  
float  
Measurement Type:nominalnominaldateTimeratioratioratio
Measurement Values Domain:
DefinitionA unique number assigned to each sample collected at a specific site at a specific date and time. The year that the sample was collected is followed by a dash and then a sequential number. For example, if 600 samples were collected in 2002, then the first sample collected is 2002-0001 and the last sample is 2002-0600.
DefinitionSite Name. If a soil site, the site is described in the name by general location then specific feature (e.g., watertrack) then specific sampling point (1,2,3,...). If multiple subsamples of an initial soil sample taken from the same specific sampling point are used, they are designated as by letter (A, B, C,...). Lake and stream sites use common names (e.g., Toolik) or LTER number codes. Exceptions in naming procedure are provided in the Code Information and in the AK-LTER_Site_Info.xls file.
FormatYYYY-MM-DD
Precision
UnitmolePhotonPerMeterSquaredPerDay
Typenatural
Min
Max
UnitmolePhotonPerMeterSquaredPerDay
Typereal
Min20.2 
Max30.6 
Unitnanometer
Typenatural
Min451 
Max482 
Missing Value Code:
Code.
Explmissing
Code.
Explmissing
Code.
Explmissing
Code.
Explmissing
Code.
Explmissing
Code.
Explmissing
Accuracy Report:            
Accuracy Assessment:            
Coverage:            
Methods:            

Non-Categorized Data Resource

Name:Permafrost_leachate_light_absorbed_xlsx
Entity Type:unknown
Description:Excel file with metadata and data sheets: Daily water-column rates of sunlight absorption by chromophoric dissolved organic matter (CDOM) leached from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022
Physical Structure Description:
Object Name:Permafrost_leachate_light_absorbed.xlsx
Size:128851 bytes
Authentication:0f0c06618c3988738fff5f3935476b6f Calculated By MD5
Externally Defined Format:
Format Name:application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-arc/20152/5/72cdaee7aca200af8f3de8d4365e2316

Data Package Usage Rights

This work is licensed under the Creative Commons Attribution 4.0 International License (CC By - Attribution)  [*http://creativecommons.org/licenses/by/4.0/(link is external)*](https://creativecommons.org/licenses/by/4.0/).

The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically, and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data.

Keywords

By Thesaurus:
https://vocab.lternet.edu/carbon, dissolved organic carbon, permafrost, organic matter, soil
Arctic LTERarctic, photochemistry, organic nutrients

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:
Permafrost soil cores were collected on the North Slope of Alaska during the ice-free summer months of June-August 2018 near the Toolik Field Station. Soil cores were collected from within the permafrost layer (at 85 cm below the surface) of Imnavait Creek wet sedge tundra and Toolik Lake tussock tundra soils. In June 2022, soil was sampled from a thermokarst failure on the shore of Lake LTER 395 on the North Slope of Alaska, where an abrupt collapse of thawing soil exposed deeper permafrost soil. Soil was sampled from the permafrost layer exposed in the headwall of the thermokarst failure (\> 80 cm below the surface) using MilliQ-rinsed pickaxes. The permafrost and thermokarst soil samples were collected as previously described in detail (Bowen et al., 2020). All soils were stored in freezers at the Toolik Field Station until overnight shipment to Woods Hole Oceanographic Institution (WHOI). DOC was leached from the permafrost and thermokarst soils as previously described (Bowen et al., 2020). Briefly, frozen soil and MilliQ water were mixed in 5-gallon, MilliQ-rinsed HDPE buckets and allowed to leach in the dark for up to 48 hours at 4 °C. Both the soil-to-water ratio of soil leachates and the leaching time were adjusted to achieve a final concentration of ~1500 μM DOC in the leachates, as estimated from the absorbance of chromophoric dissolved organic matter at 305 nm (*a*<sub>305</sub>). All leachates were passed through MilliQ-rinsed 60 μm mesh screens to remove the largest particulates and then through MilliQ-rinsed 5 μm high-capacity Whatman cartridge filters. Subsamples of each leachate for light exposure experiments were then filtered through 0.2 μm high-capacity cartridge filters. Soil leachates were stored at 4 °C until further use, and chromophoric dissolved organic matter (CDOM) was measured for each permafrost leachate as previously described (Cory et al., 2014) Wavelength-dependent, daily water column rates of absorption of ultraviolet (UV) and visible sunlight (*Q<sub>aλ</sub>*; mol photon m<sup>-2</sup> d<sup>-1</sup>) by chromophoric dissolved organic matter (CDOM) in each soil leachate were quantified as: *Q*<sub>*aλ*</sub> (*mol* *photons* *m*<sup>−2</sup>*d*<sup>−1</sup>) = *Q*<sub>*dso* − *λ*</sub>(1−*e*<sup>−*K*<sub>*dλ*</sub>*z*</sup>) where *Q<sub>dso-λ</sub>* is the photon flux directly below the water surface, derived from direct measurements of UVB, UVA, and PAR fluxes of sunlight at the Toolik Field Station that are apportioned to a clear-sky solar spectrum and corrected for atmospheric scattering; *K*<sub>*d*λ</sub> is the attenuation coefficient of the water column; and *z* is the water column depth (Cory et al. 2014). *Q<sub>aλ</sub>* was calculated for each permafrost soil leachate using an attenuation coefficient derived from the absorption spectrum for CDOM in the soil leachate, the daily incoming photon flux spectrum (mol photon m<sup>-2</sup> d<sup>-1</sup> nm<sup>-1</sup>) measured on 21 June 2018 at the Toolik Field Station on the North Slope of Alaska, and the average water column depth (0.5 m) of Imnavait Creek, a small headwater creek draining tundra soils near the Toolik Lake Field Station. References: Bowen, J. C., Ward, C. P., Kling, G. W., & Cory, R. M. (2020). Arctic amplification of global warming strengthened by sunlight oxidation of permafrost carbon to CO<sub>2</sub>. *Geophysical Research Letters, 47*(12), 0–3. https://doi.org/10.1029/2020GL087085 Cory, R. M., Ward, C. P., Crump, B. C., & Kling, G. W. (2014). Sunlight controls water column processing of carbon in arctic fresh waters. *Science, 345*(6199), 925–928. https://doi.org/10.1126/science.1253119 Rieb, E. C., Polik, C. A., Ward, C. P., Kling, G. W., & Cory, R. M. Controls on the respiration of ancient permafrost carbon in sunlit arctic surface waters. *In review.*

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Rose Cory
Organization:University of Michigan
Email Address:
rmcory@umich.edu
Id:https://orcid.org/0000-0001-9867-7084
Individual: Emma Rieb
Organization:University of Michigan
Email Address:
erieb@umich.edu
Id:https://orcid.org/0000-0002-0276-8238
Individual: Catherine Polik
Organization:University of Minnesota
Email Address:
polik020@umn.edu
Id:https://orcid.org/0000-0003-0440-1162
Individual: Collin Ward
Organization:Woods Hole Oceanographic Institution
Email Address:
cward@whoi.edu
Id:https://orcid.org/0000-0003-2979-0280
Individual: George Kling
Organization:University of Michigan
Email Address:
gwk@umich.edu
Id:https://orcid.org/0000-0002-6349-8227
Contacts:
Individual: Rose Cory
Organization:University of Michigan
Email Address:
rmcory@umich.edu
Id:https://orcid.org/0000-0001-9867-7084
Individual: Emma Rieb
Organization:University of Michigan
Email Address:
erieb@umich.edu
Id:https://orcid.org/0000-0002-0276-8238
Individual: Catherine Polik
Organization:University of Minnesota
Email Address:
polik020@umn.edu
Id:https://orcid.org/0000-0003-0440-1162
Individual: Collin Ward
Organization:Woods Hole Oceanographic Institution
Email Address:
cward@whoi.edu
Id:https://orcid.org/0000-0003-2979-0280
Individual: George Kling
Organization:University of Michigan
Email Address:
gwk@umich.edu
Id:https://orcid.org/0000-0002-6349-8227
Organization:ARCTIC LTER
Position:Information Manger
Email Address:
arc_im@mbl.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2022-02-13
End:
2022-12-16
Sampling Site: 
Description:Toolik tussock tundra soil pit 2018 Soil pits south of Toolik Lake, North Slope of Alaska. Handheld Garmin GPS
Site Coordinates:
Longitude (degree): -149.615047Latitude (degree): 68.621161000000001
Sampling Site: 
Description:Imnavait wet sedge tundra soil pit 2018 Soil pits in Imnavait Creek basin, North Slope of Alaska. Handheld Garmin GPS
Site Coordinates:
Longitude (degree): -149.313306Latitude (degree): 68.608861000000005
Sampling Site: 
Description:LTER 395 thermokarst failure headwall soil 2022 Headwall of thermokarst failure on the shore of Lake LTER 395, North Slope of Alaska. Handheld Garmin GPS
Site Coordinates:
Longitude (degree): -149.548811Latitude (degree): 68.527000000000001

Project

Parent Project Information:

Title:Collaborative proposal: Coupled biological and photochemical degradation of dissolved organic carbon in the Arctic
Personnel:
Individual: Byron Crump
Role:Principal Investigator
Funding: National Science Foundation 1754835
Related Project:
Title:Doctoral Dissertation Research: Sunlight stimulates a spectrum of microbial CO2 production from permafrost carbon
Personnel:
Individual: Rose Cory
Role:Principal Investigator
Funding: National Science Foundation 2228992
Related Project:
Title:LTER: The Role of Climate Variability in Controlling Arctic Ecosystem Function
Personnel:
Individual: Kevin Griffin
Role:Principal Investigator
Funding: National Science Foundation 2224743
Related Project:
Title:LTER: The Role of Biogeochemical and Community Openness in Governing Ecological Change in Arctic Ecosystems
Personnel:
Individual: Edward Rastetter
Role:Principal Investigator
Funding: National Science Foundation 1637459
Related Project:
Title:Collaborative Research: Tracking Carbon, Water, and Energy Balance of the Arctic Landscape at Flagship Observatories in Alaska and Siberia
Personnel:
Individual: George Kling
Role:Principal Investigator
Funding: National Science Foundation 1936769
Related Project:
Title:Development of a High-throughput, Temperature-controlled LED-based Instrument to Characterize the Wavelength Dependence of Photochemical Reactions in Aquatic Ecosystems
Personnel:
Individual: Collin Ward
Role:Principal Investigator
Funding: National Science Foundation 2219660
Related Project:
Title:LTER: The Role of Biogeochemical and Community Openness in Governing Ecological Change in Arctic Ecosystems
Personnel:
Individual: Edward Rastetter
Role:Principal Investigator
Funding: NSF 1637459
Related Project:
Title:Arctic LTER: Climate Change and Changing Disturbance Regimes in Arctic Landscapes
Personnel:
Individual: Gaius Shaver
Role:Principal Investigator
Funding: NSF 1026843
Related Project:
Title:LTER: The Arctic LTER Project: The Future Characteristics of Arctic Communities, Ecosystems, and Landscapes
Personnel:
Individual: John Hobbie
Role:Principal Investigator
Funding: NSF 9810222
Related Project:
Title:The Arctic LTER Project: Terrestrial and Freshwater Researchon Ecological Controls
Personnel:
Individual: John Hobbie
Role:Principal Investigator
Funding: NSF 9211775
Related Project:
Title:An LTER Program for the Alaskan Arctic
Personnel:
Individual: Gaius Shaver
Role:Principal Investigator
Funding: NSF 8702328

Maintenance

Maintenance:
Description:
Frequency:
Other Metadata

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