Data Package Metadata   View Summary

Baltimore Ecosystem Study: Soil moisture and temperature along an urban to rural gradient, 2011 - present

General Information
Data Package:
Local Identifier:knb-lter-bes.3400.200
Title:Baltimore Ecosystem Study: Soil moisture and temperature along an urban to rural gradient, 2011 - present
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Soil temperature and soil moisture have been measured at multiple locations in and around Baltimore Maryland to provide data on these variables in forests and lawns across an urban to rural gradient. In July 2011, we installed one Decagon Em50 Datalogger with five 5TM VWC/Temperature probes at four established forested, upslope, 20 x 20-m plots, two rural (ORU1, ORU2) and two urban (LEA1, LEA2), at 2 forested riparian sites at two transects along a stream (ORUR, ORLR), and two lawn plots on the campus of the University of Maryland Baltimore County campus (UMBC1, UMBC 2). Probes were buried horizontally at 10cm depth (except UMBC1 and UMBC2 where the five probes are mounted horizontally at a single location at depths of 50, 40, 30, 20 and 10 cm depth). At the upslope forested plots, the five probes are replicates. At the two riparian sites, probes are deployed in either "hummocks (drier, higher)" or in "hollows (lower, wetter)". Soil temperature and soil moisture were measured at hourly intervals on these plots beginning in July 2011.

In March 2017, an additional data logger was installed at Hillsdale Park (HD1) in a forested urban area. The five probes at HD1 were buried horizontally at 10cm depth and are replicates.

Earlier soil moisture data were collected monthly (1999-2011), and can be found in https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-bes&identifier=417

Publication Date:2024-03-28
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2011-06-06
End:
2017-08-08

People and Organizations
Contact:Cary Institute of Ecosystem Studies [  email ]
Creator:Groffman, Peter M (Cary Institute of Ecosystem Studies)
Creator:Martel, Lisa D (Cary Institute of Ecosystem Studies)

Data Entities
Data Table Name:
BES_Cumulative_Temp_and_VWC_All_Sites
Description:
BES Cumulative Temp and VWC_All_Sites.csv
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-bes/3400/200/bb3c8236790cb1e209c33f2d5d327dd7
Name:BES_Cumulative_Temp_and_VWC_All_Sites
Description:BES Cumulative Temp and VWC_All_Sites.csv
Number of Records:691965
Number of Columns:22

Table Structure
Object Name:BESTempVWC_UpdatedMay2021.csv
Size:63088608 byte
Authentication:e55d869ffc26ec11b8c2dccb709e5608 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:Site  
depth_reading_ID_10cm  
Port_1_VWC  
Port_1_VWC_Flag  
Port_1_Temperature  
Port_1_Temperature_Flag  
Port_2_VWC  
Port_2_VWC_Flag  
Port_2_Temperature  
Port_2_Temperature_Flag  
Port_3_VWC  
Port_3_VWC_Flag  
Port_3_Temperature  
Port_3_Temperature_Flag  
Port_4_VWC  
Port_4_VWC_Flag  
Port_4_Temperature  
Port_4_Temperature_Flag  
Port_5_VWC  
Port_5_VWC_Flag  
Port_5_Temperature  
Port_5_Temperature_Flag  
Definition:Sampling SiteDate and time string for this sampleVolumetric water contentFlag field for VWC measurmentPort 1 TemperatureFlag field for temperatureVolumetric water contentFlag field for VWC measurmentPort 2 TemperatureFlag field for temperatureVolumetric water contentFlag field for VWC measurmentPort 3 TemperatureFlag field for temperatureVolumetric water contentFlag field for VWC measurmentPort 4 TemperatureFlag field for temperatureVolumetric water contentFlag field for VWC measurmentPort 5 TemperatureFlag field for temperature
External Measurement Definition, Link: has unit Cubic Meter Per Cubic Meter has unit Degree Celsius has unit Cubic Meter Per Cubic Meter has unit Degree Celsius has unit Cubic Meter Per Cubic Meter has unit Degree Celsius has unit Cubic Meter Per Cubic Meter has unit Degree Celsius has unit Cubic Meter Per Cubic Meter has unit Degree Celsius
Storage Type:string  
string  
float  
string  
float  
string  
float  
string  
float  
string  
float  
string  
float  
string  
float  
string  
float  
string  
float  
string  
float  
string  
Measurement Type:nominalnominalrationominalrationominalrationominalrationominalrationominalrationominalrationominalrationominalrationominalrationominal
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeHD1
DefinitionHD1
Source
Code Definition
CodeLEA1
DefinitionLeakin 1
Source
Code Definition
CodeLEA2
DefinitionLeakin 2
Source
Code Definition
CodeORLR
DefinitionOregon Ridge Lower Riparian
Source
Code Definition
CodeORU1
DefinitionOregon top-slope 1
Source
Code Definition
CodeORU2
DefinitionOregon top-slope 2
Source
Code Definition
CodeORUR
DefinitionOregon ridge Upper Riparian
Source
Code Definition
CodeUMBC1
DefinitionUMBC Campus 1
Source
Code Definition
CodeUMBC2
DefinitionUMBS Campus 2
Source
Definitiontext
UnitmeterCubedPerMeterCubed
Typereal
Definitiontext
Unitcelsius
Typereal
Definitiontext
UnitmeterCubedPerMeterCubed
Typereal
Definitiontext
Unitcelsius
Typereal
Definitiontext
UnitmeterCubedPerMeterCubed
Typereal
Definitiontext
Unitcelsius
Typereal
Definitiontext
UnitmeterCubedPerMeterCubed
Typereal
Definitiontext
Unitcelsius
Typereal
Definitiontext
UnitmeterCubedPerMeterCubed
Typereal
Definitiontext
Unitcelsius
Typereal
Definitiontext
Missing Value Code:    
CodeNA
Expldata not available
 
CodeNA
Expldata not available
 
CodeNA
Expldata not available
 
CodeNA
Expldata not available
 
CodeNA
Expldata not available
 
CodeNA
Expldata not available
 
CodeNA
Expldata not available
 
CodeNA
Expldata not available
 
CodeNA
Expldata not available
 
CodeNA
Expldata not available
 
Accuracy Report:                                            
Accuracy Assessment:                                            
Coverage:                                            
Methods:                                            

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data (\"Data User\" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available \"as is.\" The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
BES VocabularyBaltimore, MD, Chesapeake Bay, Maryland, LTER, BES, Baltimore Ecosystem Study, volumetric water content
ISO 19115 Topic Categoryenvironment
LTER Controlled Vocabularysoils, watersheds, temperature, soil temperature, soil water content, dataloggers

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Hourly VWC and temperature Data from five Decagon 5TM probes (Decagon Devices, Inc.) are logged in the field by Decagon Em50 logger. Each sensor uses a 5-meter long cable with a 3.5mm stereo connector to the Em50 logger. Probes and cables are buried horizontally at 10cm of depth, except on the UMBC plots where they are buried in 10 cm increments to 50 cm. The Em50 logger is mounted above-ground on a stake. Data are collected at 30-60 day intervals using a laptop and the ECH20 Utility program. Battery levels are checked and replaced upon reaching 1/2- 1/3 capacity.

Volumetric Water Content:

The 5TM sensor uses an electromagnetic field to measure the dielectric permittivity of the soil surrounding the probe. This permittivity is proportional to the volumetric water content. Factory calibrations were used. These calibrations use the Topp equation (Topp et al., 1980) and have an accuracy of +/- 0.03 m3/m3 for a mineral soil.

Temperature:

The 5TM uses a surface-mounted thermistor to take temperature readings. It is located underneath the sensor overmold, next to one of the prongs, and will read temperature in degrees C. The equation used offers 0.5 degrees C accuracy in the range of -40C-+60C.

Data notes:

• Not all of the data are collected at 60-minute intervals. There are segments of the dataset that were collected at 30-, 20-, or 10-minute intervals instead of 60-minute intervals.

• Throughout the years of data collection, some sensors needed to be removed and replaced. It should not be assumed that each data stream (data from a given port at a specific site) was collected from the same sensor buried in exactly the same location throughout the length of data collection.

• There are a handful of rows with identical dates and timestamps. See explanation of 777 flag that can be used to filter these rows out when analyzing the data.

Data file formatting notes:

Each sensor is plugged into a port on the data logger and identified by the port number, resulting in data columns with names like “Port_1_Temperature”, “Port_1_VWC”, “Port2_Temperature”, and on through “Port_5_VWC”. Each of those temperature and VWC columns has a corresponding flag column that contains a value reflecting how a given data value was flagged. Flag values include:

• 0: Data value was not flagged.

• 1: Data value was missing (NA).

• 2: Data value was outside of an acceptable range.

◦ For temperature: outside of -10 to 38 degrees Celsius.

◦ For VWC: outside of 0 to 1.

• 3: For temperature data. Data value is more than 3 degrees Celsius away from the data value immediately before or immediately after it.

• 4: Data point has no neighbors within one hour before or after it (there is a time gap on both sides of the data point, so was unable to check if the value should be flagged 3).

• 5: For VWC data. VWC value corresponds to a temperature value that was flagged for any reason. If a temperature data value was flagged for any reason, the corresponding VWC value was flagged with a 5.

• 999: Data value was manually flagged.

Additional flags:

• 777: There are some parts of the dataset that had two rows with the same date and timestamp. If the two rows with the same date and time were not identical, all flag values in those rows were set to 777. (If the two rows held identical values for all measurements, one row had all flags set to 999 while the other was left unchanged.)

• 888: There are some parts of the dataset that appeared to have reasonable VWC data while the temperature value is marked as missing. To recover these data, VWC data that were previously flagged as 5 because their corresponding temperature value was flagged as 1 were re-flagged as 888.

After flags 0 through 5 were initially set, the data were viewed and manual flags were set, including changing some 4 flags to 999 flags if a data value looked out of line with its surroundings or was so isolated that it was not possible to tell if it was in line. For analysis, data to include have been those flagged as 0, 4, and 888, with data flagged as 1, 2, 3, 5, 777, and 999 being excluded. For more recent data, data values were left in the dataset for data flagged with a 1. For older data, out of range values were changed to NA.

Site-specific metadata:

For some sites, site-specific metadata were recorded in the earlier years of data collection. Below are notes that may help to explain some of the gaps in the data and/or explain some jumps in the data at specific sites.

• ORLR:

◦ 2/9/2012: Logger stopped logging

◦ 7/3/2012: Probes 1 and 3 are in fully saturated soil

◦ 7/27/2012: All probes (except probe 2) were knocked out/disabled by trees that fell on the plot during a large storm

◦ 9/21/2012: One cord was severed and all probes were dug up

◦ 10/15/2013: Logger removed from field to install waterproof casing

◦ 5/6/2014: Reinstalled logger in field with waterproof casing

• ORU1:

◦ 9/21/2012: Probe 4 was replaced

• ORUR:

◦ 2/9/2012: Logger stopped recording and interior of case was visibly wet with some corrosion on the copper plates of the logger

◦ 9/21/2012: Probe 3 was not working and was removed

◦ Overall: Probe 3 produces strange temperature readings while producing normal-looking VWC readings

◦ Overall: Probe 4 is supposedly on a hummock but gives consistently high VWC values

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Peter M Groffman
Organization:Cary Institute of Ecosystem Studies
Email Address:
groffmanp@caryinstitute.org
Id:https://orcid.org/0000-0001-8371-6255
Individual: Lisa D Martel
Organization:Cary Institute of Ecosystem Studies
Email Address:
martell@caryinstitute.org
Id:https://orcid.org/0000-0002-0156-4954
Contacts:
Organization:Cary Institute of Ecosystem Studies
Email Address:
besim@caryinstitute.org

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2011-06-06
End:
2017-08-08
Geographic Region:
Description:Baltimore County
Bounding Coordinates:
Northern:  39.722Southern:  39.19
Western:  -76.93Eastern:  -76.33
Sampling Site: 
Description:Leakin 1
Site Coordinates:
Longitude (degree): -76.693633Latitude (degree): 39.300367
Sampling Site: 
Description:Leakin 2
Site Coordinates:
Longitude (degree): -76.692819Latitude (degree): 39.301506
Sampling Site: 
Description:UMBC 1
Site Coordinates:
Longitude (degree): -76.702897Latitude (degree): 39.25245
Sampling Site: 
Description:UMBC 2
Site Coordinates:
Longitude (degree): -76.713531Latitude (degree): 39.235139
Sampling Site: 
Description:Oregon upper riparian
Site Coordinates:
Longitude (degree): -76.687739Latitude (degree): 39.485842
Sampling Site: 
Description:Oregon lower riparian
Site Coordinates:
Longitude (degree): -76.68765Latitude (degree): 39.481128
Sampling Site: 
Description:Oregon top-slope-1
Site Coordinates:
Longitude (degree): -76.689583Latitude (degree): 39.480864
Sampling Site: 
Description:Oregon top-slope-2
Site Coordinates:
Longitude (degree): -76.689689Latitude (degree): 39.486872

Project

Parent Project Information:

Title:LTER: Human Settlements as Ecosystems: Metropolitan Baltimore from 1797-2100: Phase II
Personnel:
Individual: Steward Pickett
Organization:Baltimore Ecosystem Study
Email Address:
picketts@caryinstitute.org
Id:https://orcid.org/0000-0002-1899-976x
Role:Principal Investigator
Funding: NSF 423476
Related Project:
Title:LTER: Baltimore Ecosystem Study Phase III: Adaptive Processes in the Baltimore Socio-Ecological System from the Sanitary to the Sustainable City
Personnel:
Individual: Steward Pickett
Organization:Baltimore Ecosystem Study
Email Address:
picketts@caryinstitute.org
Id:https://orcid.org/0000-0002-1899-976x
Role:Principal Investigator
Funding: NSF 1027188
Related Project:
Title:LTER: Dynamic heterogeneity: Investigating causes and consequences of ecological change in the Baltimore urban ecosystem
Personnel:
Individual: Steward Pickett
Organization:Baltimore Ecosystem Study
Email Address:
picketts@caryinstitute.org
Id:https://orcid.org/0000-0002-1899-976x
Role:Principal Investigator
Funding: NSF 1637661

Maintenance

Maintenance:
Description:ongoing
Frequency:
Other Metadata

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