Data Package Metadata   View Summary

Baltimore Ecosystem Study: Increased diversity of the regional species pool via seeding augments establishment of native species in experimental vacant lot restorations

General Information
Data Package:
Local Identifier:knb-lter-bes.5021.1
Title:Baltimore Ecosystem Study: Increased diversity of the regional species pool via seeding augments establishment of native species in experimental vacant lot restorations
Alternate Identifier:DOI PLACE HOLDER
Abstract:

The harsh geophysical template characterized by the urban environment combined with people’s choices has led ecologists to invoke environmental filtering as the main ecological phenomena explaining urban biodiversity patterns. Yet, dispersal is often overlooked as a driving factor, especially on expanding vacant land. Does overcoming dispersal limitation by seeding native species in urban environments and increasing the functional or phylogenetic diversity of the seeding pool increase native plant species diversity and abundance in urban vacant land? We took an experimental approach to learn how different dimensions of plant biodiversity within an augmented regional species pool, via seed additions, can explain variation in community structure over a 3-year period. Vacant lots were cleared and manipulated with seeding treatments of high or low phylogenetic and functional diversities from a pool of 28 native species. Establishment success, total native cover and native species richness were followed and compared to cleared, unseeded control lots as well as un-manipulated lots. Seeding increased native plant abundance and richness over uncleared plots, as well as cleared and unseeded control plots. Phylogenetically diverse seed mixtures had greater establishment success than mixtures composed of closely related species. Diversifying seed mixtures increased the likelihood of including species that are better able to establish on vacant land. However, there were no differences in varying levels of either functional or phylogenetic diversity. Augmenting the regional species pool via diverse seed mixtures can enhance native plant cover and richness under the harsh environmental conditions conferred by land abandonment.

Publication Date:2022-10-03
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2014-01-01
End:
2016-12-31

People and Organizations
Contact:Cary Institute of Ecosystem Studies [  email ]
Creator:Swan, Christopher M (University of Maryland Baltimore County)

Data Entities
Data Table Name:
species codes.csv
Description:
Species Codes matched with Genus species
Data Table Name:
traits
Description:
Species x Trait file
Data Table Name:
Treatment_by_Species
Description:
Proportion Cover of Each Species in Relation to Experimental Treatment
Other Name:
phylogenetic_tree
Description:
Plant Phylogenetic Tree file
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-bes/5021/1/f9f24c470784ee3eb6c3bf1c0c151376
Name:species codes.csv
Description:Species Codes matched with Genus species
Number of Records:129
Number of Columns:2

Table Structure
Object Name:Species_Codes.csv
Size:3216 bytes
Authentication:efed41ec74a6c33e59fe9e68e185ec93 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:Species Code  
Species Name  
Definition:Code used in traits.csv and Treatment by Species.csvGenus, species
Storage Type:string  
string  
Measurement Type:nominalnominal
Measurement Values Domain:
DefinitionCode used in traits.csv and Treatment by Species.csv
DefinitionGenus, species
Missing Value Code:    
Accuracy Report:    
Accuracy Assessment:    
Coverage:    
Methods:    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-bes/5021/1/b4a7cb107b59ab9d38b92d8f65efc29a
Name:traits
Description:Species x Trait file
Number of Records:131
Number of Columns:16

Table Structure
Object Name:Traits.csv
Size:14269 bytes
Authentication:e14b0c3608cbc3ced2b12ae3920db87e Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:SPECIES CODE  
SPECIES NAME  
FAMILY  
GENUS  
SPECIES  
Phylocom Code  
MissingID  
Introduced  
Native  
Forb  
Grass  
Nfixer  
Woody  
SpringBloom  
SummerBloom  
FallBloom  
Definition:Species code as indicated in species codes.csvSpecies name as indicated in species codes.csSpecies familySpecies genusSpeciesString in phylogenetic treeMissingID 1 if missingIntroduced 1 if introducedNative 1 if a native speciesForb 1 if a forbGrass 1 if a grassNFixer 1 if a nitrogen fixerWoody 1 if a woody speciesSpringBloom 1 if blooms in the springSummerBloom 1 if blooms in the summerFallBloom 1 if blooms in the fall
Storage Type:string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
Measurement Type:nominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominal
Measurement Values Domain:
DefinitionSpecies code as indicated in species codes.csv
DefinitionSpecies name as indicated in species codes.cs
DefinitionSpecies family
DefinitionSpecies genus
DefinitionSpecies
DefinitionString in phylogenetic tree
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionMissingID 1 if missing
Source
Code Definition
Code0
DefinitionMissingID 0 if not missing
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionIntroduced 1 if introduced
Source
Code Definition
Code0
DefinitionIntroduced 0 if not introduced
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionNative 1 if a native species
Source
Code Definition
Code0
DefinitionNative 0 if not native species
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionForb 1 if a forb
Source
Code Definition
Code0
DefinitionForb 0 if not a forb
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionGrass 1 if a grass
Source
Code Definition
Code0
DefinitionGrass 0 if not a grass
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionNFixer 1 if a nitrogen fixer
Source
Code Definition
Code0
DefinitionNFixer 0 if not a nitrogen fixer
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionWoody 1 if a woody species
Source
Code Definition
Code0
DefinitionWoody 0 if not a woody species
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionSpringBloom 1 if blooms in the spring
Source
Code Definition
Code0
DefinitionSpringBloom 0 if it does not bloom in the spring
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionSummerBloom 1 if blooms in the summer
Source
Code Definition
Code0
DefinitionSummerBloom 0 if it does not bloom in the summer
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionFallBloom 1 if blooms in the fall
Source
Code Definition
Code0
DefinitionFallBloom 0 if it does not bloom in the fall
Source
Missing Value Code:                                
Accuracy Report:                                
Accuracy Assessment:                                
Coverage:                                
Methods:                                

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-bes/5021/1/d044088ba49952b21d1b8320c4eee636
Name:Treatment_by_Species
Description:Proportion Cover of Each Species in Relation to Experimental Treatment
Number of Records:81
Number of Columns:138

Table Structure
Object Name:Treatment_by_Species.csv
Size:31761 bytes
Authentication:0010a7a94edf857984d5bba44ace1aa6 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:FunctionalDiversity  
PhylogeneticDiversity  
SITE.ID  
TREATMENT  
YEAR  
Proportion.Unknown  
Proportion.Bareground  
ACVI  
AIAL  
ALPE  
AMRE  
ARMI  
ARVU  
ASSY  
BRTE  
CASE  
CHAL  
CIIN  
CLTE  
CYDA  
DACA  
DAGL  
DISA  
DUIN  
ERAN  
FAJA  
FEAR  
LEVI  
LOCO  
LOPE  
MEAL  
MELU  
MEOF  
MOAL  
OXST  
PAQU  
PLLA  
PLMA  
POA  
RUCR  
SEPU  
SEVA  
SIOF  
SYLA2  
SYPI  
TAOF  
TRPR  
TRRE  
ULSP  
VISO  
ACNE  
ACSP  
AGAL  
AGFO  
AMAR  
ANVI  
APCA  
ASTU  
BIBI  
BIPI  
BOCU  
BRIN  
BRJA  
BRYO  
CARA  
CASP  
CEOR  
CITE  
CLAN  
COCA  
COLA  
COTI  
CYOB  
DEPA  
DIIS  
ECCR  
ECPU  
ELRE  
ELVI  
EUAL  
EUMA  
FUJA  
GAPU  
GLHE  
GYEL  
HEHE  
HISY  
JUNI  
LASE  
LEST  
LIGR  
LIPE  
LIPI  
MANE  
MESA  
MIVI  
MOPU  
MUSC  
OEBI  
PADI  
PAPI  
PHPR  
PHSU  
PLRU  
POAV  
POOL  
POPE  
POSI  
PYCA  
RAPI  
SCSC  
SEFA  
SEVI  
SEVU  
SILA  
SOAS  
SOOL  
SOSP  
SYLA  
SYPA  
SYSP  
TOJA  
TORA  
TRFL  
ULPA  
ULRU  
VEPE  
VETH  
VEUR  
VIRI  
UNK.AGG  
BIFR  
BRAR  
BRSP  
CABU  
CYES  
GAQU  
VESE  
Definition:Functional diversityPhylogenetic diversityNumerical value assigned to each plotPlanted, Cleared, UnmanagedSample yearProportion of ground taken as unknown coverProportion of ground that is bareAcalypha virginicaAilanthus altissimaAlliaria petiolataAmaranthus retroflexusArctum minusArtemisia vulgarisAsclepias syriacaBromus tectorumCalystegia sepiumChenopodium albumCichorium intybusClematus ternifloraCynodon dactylonDaucus carotaDactylis glomerataDigitaria sanguinalisDuchesnea indicaErigeron anuusFallopia japonicaFestuca arundinaceaLepidium virginicumLotus corniculatusLolium perenneMelilous albaMedicago lupulinaMelilotus officinalusMorus albaOxalis strictaParthenocissus quinquefoliaPlantago lanceolataPlantago majorPoaRumex crispusSetaria pumilaSecurigera variaSisymbrium officinaleSymphyotrichum lanceolatumSymphyotrichum pilosumTaraxacum officinaleTrifolium pratenseTrifolium repensUlmusViola sorroriaAcer negundoAcerAgeratina altissimaAgastache foeniculumAmbrosia artemisiifoliaAndropogon virginicusApocynum cannabinumAsclepias tuberosaBidens bipinnata2016 unknown spp codeBouteloua curtipendulaBromus inermisBromus japonicusBryophytaCampsis radicansCarexCelastrus orbiculatus2016 unknown spp code2016 unknown spp codeConyza canadensisCoreopsis lanceolataCoreopsis tinctoria2016 unknown spp codeDesmodium paniculatumDigitaria ischaemumEchinocloa crus-galliEchinacea purpureaElymus repensElymus virginicusEupatorium altissimumEuphorbia maculatum2016 unknown spp codeGaillardia pulchellaGlechoma hederaceaGypsophila elegansHeliopsis helianthoidesHibiscus syriacusJuglans nigraLactuca serriolaLespedeza striataLinum grandiflorum rubrumLinum perenne2016 unknown spp codeMalva neglectaMedicago sativaMicrostegium vimineumMonarda punctataMuhlenbergia schreberiOenothera biennisPanicum dichotomiflorum2016 unknown spp codeUnknown codePhysalis subglabrataPlantago rugeliiPolygonum avicularePortulaca oleraceaPolygonum pensylvanicumPotentilla simplexPyrus calleryanaRatibida pinnataSchizochyrium scopariumSetaria faberiSetaria viridisSenecio vulgarisSilene latifoliaSonchus asperSonchus oleraceusSolanumSymphyotrichum laeveSymphyotrichum paniculatumSymphyotrichumTorilla japonicusToxicodendron radicansTridens flavusUlmus parvifloraUlmus rubraVeronica persicaVerbascum thapsisVerbena urticifoliaVitis ripariaUnknown aggregated sampleBidens frondosaBromus arvensisBromus sp.Capsella bursa-pastorusCyperus esculentusGalinsoga quadriradiataVeronica serpyllifolia
Storage Type:string  
string  
string  
string  
date  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
Measurement Type:nominalnominalnominalnominaldateTimeratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeH
DefinitionHigh functional diversity
Source
Code Definition
CodeL
DefinitionLow functional diversity
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeH
DefinitionHigh phylogenetic diversity
Source
Code Definition
CodeL
DefinitionLow phylogenetic diversity
Source
DefinitionNumerical value assigned to each plot
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodePlanted
DefinitionPlanted
Source
Code Definition
CodeCleared
DefinitionCleared
Source
Code Definition
CodeUnmanaged
DefinitionUnmanaged
Source
FormatYYYY
Precision
Unitdimensionless
Typereal
Min
Max0.128361858 
Unitdimensionless
Typereal
Min
Max0.5625 
Unitdimensionless
Typereal
Min
Max0.075 
Unitdimensionless
Typereal
Min
Max0.02 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.035 
Unitdimensionless
Typereal
Min
Max0.19 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.28 
Unitdimensionless
Typereal
Min
Max0.525 
Unitdimensionless
Typereal
Min
Max0.3275 
Unitdimensionless
Typereal
Min
Max0.875 
Unitdimensionless
Typereal
Min
Max0.5 
Unitdimensionless
Typereal
Min
Max0.875 
Unitdimensionless
Typereal
Min
Max0.196666667 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.875 
Unitdimensionless
Typereal
Min
Max0.19 
Unitdimensionless
Typereal
Min
Max0.093333333 
Unitdimensionless
Typereal
Min
Max0.196666667 
Unitdimensionless
Typereal
Min
Max0.541666667 
Unitdimensionless
Typereal
Min
Max0.105 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.205 
Unitdimensionless
Typereal
Min
Max0.09375 
Unitdimensionless
Typereal
Min
Max0.0875 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.081666667 
Unitdimensionless
Typereal
Min
Max0.4 
Unitdimensionless
Typereal
Min
Max0.19 
Unitdimensionless
Typereal
Min
Max0.48 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.346666667 
Unitdimensionless
Typereal
Min
Max0.875 
Unitdimensionless
Typereal
Min
Max0.00875 
Unitdimensionless
Typereal
Min
Max0.04 
Unitdimensionless
Typereal
Min
Max0.708333333 
Unitdimensionless
Typereal
Min
Max0.15 
Unitdimensionless
Typereal
Min
Max0.4 
Unitdimensionless
Typereal
Min
Max0.5125 
Unitdimensionless
Typereal
Min
Max0.0075 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.005 
Unitdimensionless
Typereal
Min
Max0.005 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.09 
Unitdimensionless
Typereal
Min
Max0.266666667 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.625 
Unitdimensionless
Typereal
Min
Max0.07 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.0525 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.625 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.075 
Unitdimensionless
Typereal
Min
Max0.225 
Unitdimensionless
Typereal
Min
Max0.3875 
Unitdimensionless
Typereal
Min
Max0.005 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.075 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.625 
Unitdimensionless
Typereal
Min
Max0.05375 
Unitdimensionless
Typereal
Min
Max0.075 
Unitdimensionless
Typereal
Min
Max0.01625 
Unitdimensionless
Typereal
Min
Max0.315 
Unitdimensionless
Typereal
Min
Max0.04125 
Unitdimensionless
Typereal
Min
Max0.475 
Unitdimensionless
Typereal
Min
Max0.075 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.19625 
Unitdimensionless
Typereal
Min
Max0.075 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.05125 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.541666667 
Unitdimensionless
Typereal
Min
Max0.1025 
Unitdimensionless
Typereal
Min
Max0.708333333 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.391666667 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.005 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.075 
Unitdimensionless
Typereal
Min
Max0.00125 
Unitdimensionless
Typereal
Min
Max0.00125 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.375 
Unitdimensionless
Typereal
Min
Max0.03375 
Unitdimensionless
Typereal
Min
Max0.03375 
Unitdimensionless
Typereal
Min
Max0.005 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.01625 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.3275 
Unitdimensionless
Typereal
Min
Max0.005 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.075 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.005 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.075 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.03 
Unitdimensionless
Typereal
Min
Max0.175 
Unitdimensionless
Typereal
Min
Max0.015 
Unitdimensionless
Typereal
Min
Max0.015 
Unitdimensionless
Typereal
Min
Max0.081666667 
Unitdimensionless
Typereal
Min
Max0.04 
Unitdimensionless
Typereal
Min
Max0.015 
Unitdimensionless
Typereal
Min
Max0.015 
Unitdimensionless
Typereal
Min
Max0.015 
Missing Value Code:
CodeNA
Explnot applicable
CodeNA
Explnot applicable
                                                                                                                                                                                                                                                                               
Accuracy Report:                                                                                                                                                                                                                                                                                    
Accuracy Assessment:                                                                                                                                                                                                                                                                                    
Coverage:                                                                                                                                                                                                                                                                                    
Methods:                                                                                                                                                                                                                                                                                    

Non-Categorized Data Resource

Name:phylogenetic_tree
Entity Type:unknown
Description:Plant Phylogenetic Tree file
Physical Structure Description:
Object Name:phylogenetic_tree.txt
Size:4857 bytes
Authentication:bb716a219e5dff5ef3cc15d039f1b842 Calculated By MD5
Externally Defined Format:
Format Name:text/plain
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-bes/5021/1/b83e4891306103448c9f19b013cccc04

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Core Research Areapopulations, disturbance patterns
BES VocabularyBaltimore, MD, Maryland, Baltimore Ecosystem Study, BES, LTER
LTER Controlled Vocabularywatersheds, urban
National Research & Development TaxonomyEcology, Ecosystems, & Environment, Environment and People , Urban natural resources management
ISO 19115 Topic Categorybiota, environment

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Study System and Experimental Design. Designed urban experiments can simultaneously address key questions in community ecology as well as complex environmental issues. Vacant and abandoned land is a major concern in many US cities since (1) it is rapidly expanding in many cities, (2) it suffers from a variety of management/mis-management regimes, and (3) while “green”, it harbors a plethora of non-native and/or invasive plant species that can serve as sources of invasion into more “natural” habitats. For this study, we took advantage of a local policy program and adopted 24 vacant lots located in an area of west Baltimore City, Maryland, USA. A vacant “lot” defines a land parcel where a residential rowhouse once stood. All adopted lots were 5 m wide and between 20-25 m long, and all were located within 1 km radius of each other. These lots served as our experimental study units -- a plot -- and each was seeded with different experimentally designed mixtures of native plants. The assembly of these communities was then documented for 3 years post-seeding. Due to logistical constraints, plot position was not uniformly distributed throughout the neighborhood (i.e., building demolition is not a random process) but treatments were allocated randomly to plots. Plots were delineated and separated from each other by a 1m buffer if located adjacent to one another. Unfortunately, lot age since abandonment was unknown, but all were previously occupied by a rowhome of similar construction type.

A species pool consisting of 28 plant species was developed for the experimental seeding of vacant lots (Fig 1). Most of the species were native to the Northeastern USA (all to the USA) and all were expected to be tolerant of the environmental conditions in vacant lots; i.e. neutral-basic soil that is dry and compacted with little organic matter. Seeds were sourced from Ernst Conservation Seeds (https://www.ernstseed.com), and local genotypes used when available. Of the 24 vacant lots, 4 were randomly selected to serve as unseeded controls, and the remaining 20 were seeded with compositionally unique mixes of 12 species each.

The seeded lots were assigned randomly to a fully crossed design of high and low functional and phylogenetic diversity, while maintaining constant species richness across treatments, and ensuring functional and phylogenetic diversity remained uncorrelated. We designed the diversity treatments by first simulating 5000 random communities, consisting of 12 species from our species pool. We then selected mixes that represented the upper and lower quartiles of functional and phylogenetic diversity, while ensuring that the presence of a particular species was not statistically confounded with any diversity treatments. We selected three categorical functional traits to measure functional diversity of the seed mixes: start of bloom time (spring, summer, fall), functional group (forb, legume, grass), and life history strategy (annual or perennial). We estimated functional diversity of each community using the functional dispersion (FDis) index (Laliberte and Legendre 2010) with FD package in R ( R Core Team 2014). We also created a phylogenetic tree to determine phylogenetic diversity of each seeded mix. Using the open-source programs Phylomatic and Phylocom to assemble the phylogenetic tree, we estimated branch lengths and calculated phylogenetic metrics (Webb et al. 2008). We derived our tree from the most recent informal supertree available from the Angiosperm Phylogeny Website (mobot.org/MOBOT/research/apweb/), which is resolved to the family level, and then assigned ages, based on fossil records, to nodes (Wikström et al. 2001), and evenly distributed variance throughout the rest of the tree using the ‘bladj’ function in the phylocomr package in R (R Core Team 2014). We measured phylogenetic diversity of each seeded community using the metric Mean Nearest Taxonomic Distance (MNTD, Webb et al. 2002).

Soil Sampling. To understand the underlying soil conditions which are known to be quite variable in urban ecosystems, we collected approximately equal-sized soil samples from the top 5 cm of soil at each sampling plot using a hand trowel. A single sample was taken at a haphazardly chosen location near the center of the lot. We pooled samples and sent the air-dried soil samples to acquire nutrient availability analyses performed by the Cornell Nutrient Analysis Laboratories (Ithaca, NY) using the Mehlich-I extraction method. We report the following characteristics known to be highly variable in urban environments: soil moisture, pH, organic matter content, P, Al, Ca, Fe, K, Mg, Mn, Zn and NO3.

Site preparation and Planting Methods. Sites were prepared and seeded between March and April 2014. Each plot was mowed to approximately 5 cm, prior to application of a foliar herbicide (glyphosate) to remove all existing vegetation. Once the vegetation was dry (approximately 14 days), the soil surface was lightly raked to remove debris and expose the soil surface for seeding. Total seed mass was weighed to the higher end of recommended seeding rates for each plot area. Seeds were mixed on site with approximately 2 l of coarse sand, then broadcast seeded by hand in a cross pattern until the area was evenly covered. Following seeding, no additional management was conducted, apart from mowing to a height of approximately 15 cm, twice a summer in the first season, and once a summer the following seasons. Split-rail fences were installed around the edge of each block of experimental lots (Fig 2), and signs were installed to clarify the intent of the project to neighbors and city officials.

Experimental Design

We designated our treatment groups as:

Data Collection. Plant communities were sampled during peak growing season (July) of each sample year (2014, 2015, 2016), when the vegetation was at a minimum height of 10-cm, which allowed for accurate identification of species. We visually estimated percentage cover of each species in stratified, randomly placed 1-m2 quadrats distributed along two transects running perpendicular to the street and placed randomly along the front of the lot but at least 1 m away from the edge of the lot or any heavily-trafficked walkway. This resulted in a total of eight sampling quadrats per lot.

We identified 130 different species. Seventeen species could not be identified beyond family level, and several cool season grasses could only be identified to genus because they were not in flower at the time of the survey. Because the majority of unknown species were seedlings covering less than 1% of the sampling plot, we excluded them from analyses to avoid complications with interpreting the data. Species identifications were based primarily Del Tredici (2010).

Data analysis. We took several approaches to address the question, “does overcoming dispersal limitation by seeding native species in urban environments and increasing the functional or phylogenetic diversity of potential colonists increase native plant species diversity and abundance in urban vacant land?” First, we ran a one-way analysis of variance on proportional cover of native species and native species richness in the resulting plant community in each of the vacant lot treatments. We ran this analysis both in aggregate across all years, as well as separately by each study year. The groupings we compared were plots that were (i) planted, (ii) cleared but left unplanted, and (iii) unmanaged “control” lots, for which management was identical to ambient vacant lot management conditions. We separated the analysis of phylogenetic diversity of the seed pool (High, Low) from functional diversity (High, Low). As such, we present the results individually for each year (2014, 2015, 2016) as unmanaged plots were not able to be measured in 2014. We do not statistically compare unmanaged plots to the other categories; instead, we visually represented the unmanaged native diversity as a horizontal line for the average level of native diversity (for 2014 and 2015), and with dashed lines around it depicting the standard error. Given that there was no interaction between year × treatment for any of the models, we only present results averaged across years in the following sections, but do follow with analysis of differences following a Tukey’s HSD comparison procedure.

We relied on database trait measures (USDA PLANTS Database, plants.usda.gov; LEDA Traitbase, (Kleyer et al. 2008), the Royal Botanic Gardens Kew Seed Information Database, data.kew.org/sid/) to further address which traits confer native plant species establishment success. These included functional group, bloom time, life history strategy, seed weight, specific leaf area, expected height at maturity, rate of vegetative spread, and root morphology. This effort focused on establishment traits only, which differed from the broader set of traits used to organize the functional diversity seed mixture treatments. We then calculated the percent establishment of each species by determining the number of sites each species was seeded in divided by the number of sites where each species was scored as present at any point in study (which could be larger due to spread to unseeded sites). We also ran a redundancy analysis (RDA) model to determine which components of the matrix of traits predicted establishment success of the seeded species. RDA is a method of constrained ordination which is capable of partitioning variation across multiple explanatory factors. Because the functional trait model was not significant, we estimated establishment success of each species by calculated phylogenetic signal (Blomburg’s K), based on the phylogenetic tree created in Phylocom. This allowed us to determine whether closely related species were more likely to show similar rates in establishment success. This analysis was carried out in the phylocomr package in R. All statistical analyses were carried out in R version 4.0.2 (R Core Team 2020)

Del Tredici, P. 2010. Wild urban plants of the northeast: a field guide. Comstock Publishing, Ithaca, NY.

Laliberte, E., and Legendre, P. 2010. A distance-based framework for measuring functional diversity from multiple traits. Ecology 91: 299-305.

R Core Team. 2020. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.

Webb, C.O., Ackerly, D.D., McPeek, M.A., and Donoghue, M.J. 2002. Phylogenies and community ecology. Annual Review of Ecology and Systematics 33:475-505.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Christopher M Swan
Organization:University of Maryland Baltimore County
Email Address:
chris.swan@umbc.edu
Id:https://orcid.org/0000-0002-9763-9630
Contacts:
Organization:Cary Institute of Ecosystem Studies
Email Address:
besim@caryinstitute.org

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2014-01-01
End:
2016-12-31
Geographic Region:
Description:Baltimore County
Bounding Coordinates:
Northern:  39.722Southern:  39.19
Western:  -76.93Eastern:  -76.33
Geographic Region:
Description:Baltimore City
Bounding Coordinates:
Northern:  39.373Southern:  39.196
Western:  -76.712Eastern:  -76.528

Project

Parent Project Information:

Title:LTER: Baltimore Ecosystem Study Phase III: Adaptive Processes in the Baltimore Socio-Ecological System from the Sanitary to the Sustainable City (BES-III 2011-2018)
Personnel:
Individual: Steward TA Pickett
Organization:Cary Institute of Ecosystem Studies
Email Address:
picketts@caryinstitute.org
Id:https://orcid.org/0000-0002-1899-976x
Role:Principal Investigator
Funding: NSF 1027188

Maintenance

Maintenance:
Description:complete
Frequency:
Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

UNM logo UW-M logo