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Fungal colonization of fine roots and foliar %N, %C, d15N, d13C, and gas exchange of seedlings outplanted at Finger Mountain and the Anaktuvuk River Fire.

General Information
Data Package:
Local Identifier:knb-lter-bnz.740.2
Title:Fungal colonization of fine roots and foliar %N, %C, d15N, d13C, and gas exchange of seedlings outplanted at Finger Mountain and the Anaktuvuk River Fire.
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This dataset contains proportion of fine root length colonized by root-associated fungi, foliar %N, %C, d15N, d13C, and maximum photosynthesis, respiration, LAI, and CUE for Picea mariana, Picea glauca, Alnus viridis, and Betula neo-alaskana seedlings inoculated with root-associated fungal communities and outplanted at Finger Mountain and the Anaktuvuk River Fire burn scars.

Short Name:knb-lter-bnz.740.2
Publication Date:2020-05-20
For more information:
Visit: http://www.lter.uaf.edu/data/data-detail/id/740

Time Period
Begin:
2009-07-01
End:
2011-08-30

People and Organizations
Contact:Data Manager (Bonanza Creek LTER) [  email ]
Creator:Hewitt, Rebecca Eliza 
Creator:Chapin, F. Stuart (Primary Investigator (retired))
Creator:Hollingsworth, Teresa Nettleton (LTER Co-Principal Investigator)
Creator:Mack, Michelle Cailin (Co-Principal Investigator)
Creator:Rocha, Adrian V 
Creator:Taylor, D. Lee (Co-Investigator)
Organization:Bonanza Creek LTER

Data Entities
Data Table Name:
740_FM_ARF_foliar_root.csv
Description:
This dataset contains outplanted seedling survival, growth, and biomass data.
Detailed Metadata

Data Entities

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-bnz/740/2/9022fd617f925ba9a21e9f906471dc0f
Name:740_FM_ARF_foliar_root.csv
Description:This dataset contains outplanted seedling survival, growth, and biomass data.
Number of Columns:14

Table Structure
Object Name:740_FM_ARF_foliar_root.csv
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Line Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 %N%Cd15Nd13Cblockspeciestrtsiteprop.colRPsELAICUE
Column Name:%N  
%C  
d15N  
d13C  
block  
species  
trt  
site  
prop.col  
R  
Ps  
E  
LAI  
CUE  
Definition:foliar % N by massfoliar % C by massfoliar d13Cfoliar d15Ntransectseedling speciesmycorrhizal inoculation treatmentoutplantingproportion of fine root length colonized by root-associated fungirespirationmaximum photosynthesisevapotranspirationleaf area indexcarbon use efficiency
Storage Type:float  
float  
float  
float  
integer  
string  
string  
string  
float  
float  
float  
float  
float  
float  
Measurement Type:ratioratioratiorationominalnominalnominalnominalratioratioratioratioratioratio
Measurement Values Domain:
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Definitiontransect
Definitionseedling species
Definitionmycorrhizal inoculation treatment
Definitionoutplanting
Unitdimensionless
Typereal
UnitumolCO2m-2s-1
Typereal
UnitumolCO2m-2s-1
Typereal
UnitumolCO2m-2s-1
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Missing Value Code:                
CodeNaN
ExplMissing Value
CodeNaN
ExplMissing Value
CodeNaN
ExplMissing Value
CodeNaN
ExplMissing Value
CodeNaN
ExplMissing Value
CodeNaN
ExplMissing Value
Accuracy Report:                            
Accuracy Assessment:                            
Coverage:                            
Methods:                            

Data Package Usage Rights

Data Use

This work has been produced as part of the Long Term Ecological Research Program and data users should adhere to the Data Use Agreement of the Long Term Ecological Research Network.

Citation

It is considered a matter of professional ethics to acknowledge the work of other scientists. Thus, the Data User should properly cite the Data Set in any publications or in the metadata of any derived data products that were produced using the Data Set. Citation should take the following general form: Creator(s), Year of Data Publication, Title of Dataset, Publisher, Dataset identifier, Dataset URL, Dataset DOI. For Example: Van Cleve, Keith; Chapin, F. Stuart; Ruess, Roger W. 2016. Bonanza Creek Experimental Forest: Hourly Temperature (sample, min, max) at 50 cm and 150 cm from 1988 to Present, Bonanza Creek LTER - University of Alaska Fairbanks. BNZ:1, http://www.lter.uaf.edu/data/data-detail/id/1. doi:10.6073/pasta/725db90d86686be13e6d6b2da5d61217.

Acknowledgement

The Data User should acknowledge any institutional support or specific funding awards referenced in the metadata accompanying this dataset in any publications where the Data Set contributed significantly to its content. Acknowledgements should identify the supporting party, the party that received the support, and any identifying information such as grant numbers. For example: Data are provided by the Bonanza Creek LTER, a partnership between the University of Alaska Fairbanks, and the U.S. Forest Service. Significant funding for collection of these data was provided by the National Science Foundation Long-Term Ecological Research program (NSF Grant numbers DEB-1636476, DEB-1026415, DEB-0620579, DEB-0423442, DEB-0080609, DEB-9810217, DEB-9211769, DEB-8702629) and by the USDA Forest Service, Pacific Northwest Research Station (Agreement # RJVA-PNW-01-JV-11261952-231).

Notification

The Data User will notify the Data Set Contact when any derivative work or publication based on or derived from the Data Set is distributed.

Collaboration

The Data Set has been released in the spirit of open scientific collaboration. Data Users are thus strongly encouraged to consider consultation, collaboration and/or co-authorship with the Data Set Creator.

Disclaimer

While substantial efforts are made to ensure the accuracy of data and documentation contained in this Data Set, complete accuracy of data and metadata cannot be guaranteed. All data and metadata are made available in its present condition. The Data User holds all parties involved in the production or distribution of the Data Set harmless for damages resulting from its use or interpretation.

Additional Acknowledgements

Rebecca Hewitt

Keywords

By Thesaurus:
SuccessionAlnus crispa, arctic, Betula neoalaskana, biomass, ectomycorrhizae, Picea glauca, Picea mariana, postfire recruitment, tree seedlings, treeline

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Methods

FIELD: To determine the role of root-associated fungi in post-fire seedling recruitment and future biome shifts, we outplanted four dominant boreal tree and shrub species inoculated with one of three treatments at treeline and in tundra: burned boreal forest, unburned boreal forest or a control treatment of sterilized inoculum. In the two years after inoculation, we visited both outplant sites in July during peak biomass. Each visit we assessed seedling survival and growth, and then harvested half of the seedlings to assess mycorrhizal composition. As such, half of the seedlings were harvested one year after inoculation and outplanting and half of the seedlings were harvested two full years after inoculation and outplanting. Each year we also measured instantaneous maximum photosynthesis and respiration on surviving seedings and calculated carbon use efficiency (CUE). We measured maximum photosynthesis with five readings at 1500 ?mols of light and respiration with five readings in the dark at a temperature of 20 degC using a LI-COR 6400 (LI-COR, Inc., Lincoln, NE, USA). Measurements were then averaged and CUE was calculated as [1- (respiration/photosynthesis)]. The gas exchange calculations were adjusted for differences in leaf area by scanning leaves [600 dpi on an HP ScanJet 4570c scanner with HP PrecisionScan Pro software] and measuring leaf area of the scanned images with ImageJ. LAB: After harvesting seedlings we separated roots from shoots. Roots were stored at 4 degC and processed within five days. Each root system was gently rinsed with RO water to remove soil, and clean roots were placed in RNAlater (Ambion, Inc., Austin, Texas, USA). Each seedling root system was cut into four cm root segments and floated in nanopure water. For seedlings harvested two years after inoculation, we assessed the proportion of root length colonized by RAF using the point intercept method. For seedlings harvested two years after planting, we separated leaves from stems, dried tissues at 60 degC for 48 hours, ground foliar samples, and ran them for Elemental Analysis- Isotope Ratio Mass Spectrometer (IRMS, Delta Advantage, Thermo Fisher Scientific, Waltham, MA, USA) coupled to an Elemental Combustion Analyzer (Costech ECS4010, Valencia, CA, USA).

Sampling Area and Study Extent
Sampling Description:

Sampling Frequency

annual

Sampling Extent:
Sampling Site: 
Description:Finger_Mountain -- mixed black spruce and white spruce treeline . Site alternate names:
Site Coordinates:
Longitude (degree): -147Latitude (degree): 65
Sampling Site: 
Description:Anatuvuk_River_Fire -- upland shrubby tussock tundra . Site alternate names:
Site Coordinates:
Longitude (degree): -147Latitude (degree): 65

Time Period
Begin:
2009-07-01
End:
2011-08-30

People and Organizations

Publishers:
Organization:Bonanza Creek LTER
Address:
Boreal Ecology Cooperative Research Unit ,
University of Alaska Fairbanks,
P.O. Box 756780 ,
Fairbanks, AK 99775 USA
Phone:
907-474-6364 (voice)
Phone:
907-474-6251 (fax)
Creators:
Individual: Rebecca Eliza Hewitt
Address:
Center for Ecosystem Science and Society; Northern Arizona University; PO Box 5620,
Flagstaff, AZ 86011 United States
Phone:
928-523-8344 (voice)
Email Address:
Rebecca.Hewitt@nau.edu
Web Address:
https://ecoss.nau.edu/team/rebecca-hewitt/
Individual: F. Stuart Chapin
Position:Primary Investigator (retired)
Address:
Institute of Arctic Biology: University of Alaska Fairbanks,
Fairbanks, AK 99775 United States
Phone:
(907) 455-6408 (voice)
Phone:
(907) 474-6967 (fax)
Email Address:
terry.chapin@alaska.edu
Web Address:
https://sites.google.com/alaska.edu/f-stuart-chapin-iii-terry/
Individual: Teresa Nettleton Hollingsworth
Position:LTER Co-Principal Investigator
Address:
Boreal Ecology Cooperative Research Unit, PNW Research Station, USDA Forest Service, P.O. Box 756780,University of Alaska Fairbanks,
Fairbanks, AK 99775 United States
Phone:
(907) 474-2424 (voice)
Phone:
(907) 474-6251 (fax)
Email Address:
thollingsworth@fs.fed.us
Web Address:
http://www.becru.uaf.edu/personnel/Teresa.htm
Individual: Michelle Cailin Mack
Position:Co-Principal Investigator
Address:
Northern Arizona University: Ecosystem Science and Society Center (ECOSS) PO Box 5620,
Flagstaff, AZ 86011 United States
Phone:
(352) 275-1565 (voice)
Email Address:
Michelle.Mack@nau.edu
Web Address:
https://www2.nau.edu/macklab-p/wordpress/
Individual: Adrian V Rocha
Individual: D. Lee Taylor
Position:Co-Investigator
Address:
Department of Biology; MSC03 2020; 1 University of New Mexico,
Albuquerque, NM 87131 USA
Phone:
(505) 277-0577 (voice)
Email Address:
fflt@unm.edu
Web Address:
http://taylorlabunm.weebly.com/
Organization:Bonanza Creek LTER
Address:
Boreal Ecology Cooperative Research Unit ,
University of Alaska Fairbanks,
P.O. Box 756780 ,
Fairbanks, AK 99775 USA
Phone:
907-474-6364 (voice)
Phone:
907-474-6251 (fax)
Email Address:
uaf-bnz-im-team@alaska.edu
Web Address:
http://www.lter.uaf.edu
Contacts:
Organization:Bonanza Creek LTER
Position:Data Manager
Address:
Boreal Ecology Cooperative Research Unit ,
University of Alaska Fairbanks,
P.O. Box 756780 ,
Fairbanks, AK 99775 USA
Phone:
907-474-6364 (voice)
Phone:
907-474-6251 (fax)
Email Address:
uaf-bnz-im-team@alaska.edu
Web Address:
http://www.lter.uaf.edu
Metadata Providers:
Organization:Bonanza Creek LTER
Position:Data Manager
Address:
Boreal Ecology Cooperative Research Unit ,
University of Alaska Fairbanks,
P.O. Box 756780 ,
Fairbanks, AK 99775 USA
Phone:
907-474-6364 (voice)
Phone:
907-474-6251 (fax)
Email Address:
uaf-bnz-im-team@alaska.edu
Web Address:
http://www.lter.uaf.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2009-07-01
End:
2011-08-30
Geographic Region:
Description:Dataset geographic description information is unavailable. {datafile/geoCoverage is empty}
Bounding Coordinates:
Northern:  68.993842Southern:  66.341225
Western:  -150.453978Eastern:  -150.305364

Project

Parent Project Information:

Title:The Bonanza Creek LTER
Personnel:
Individual: Keith Van Cleve
Organization:Bonanza Creek LTER
Position:Lead Principal Investigator
Role:Principal Investigator
Individual: F.S. Stuart Chapin
Organization:Bonanza Creek LTER
Position:Lead Principal Investigator
Address:
Department of Biology and Wildlife; Institute of Arctic Biology: University of Alaska Fairbanks 193 Arctic Health P.O. Box 757000,
Fairbanks, AK 99775 United States
Phone:
(907) 455-6408 (voice)
Phone:
(907) 474-6967 (fax)
Email Address:
terry.chapin@alaska.edu
Web Address:
http://terrychapin.org/
Role:Principal Investigator
Individual: Roger W. Ruess
Organization:Bonanza Creek LTER
Position:Lead Principal Investigator
Address:
Institute of Arctic Biology University of Alaska Fairbanks P.O. Box 757000,
Fairbanks, AK 99775-0180 United States
Phone:
(907) 474-7153 (voice)
Phone:
(907) 474-6967 (fax)
Email Address:
rwruess@alaska.edu
Web Address:
http://www.iab.uaf.edu/~roger_ruess/
Role:Principal Investigator
Funding:

NSF Grant numbers DEB-1636476, DEB-1026415, DEB-0620579, DEB-0423442, DEB-0080609, DEB-9810217, DEB-9211769, DEB-8702629

USDA Forest Service, Pacific Northwest Research Station (Agreement # RJVA-PNW-01-JV-11261952-231)

Maintenance

Maintenance:
Description:

Status

Completed

Frequency:
Other Metadata

Additional Metadata

additionalMetadata
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        |     |     |        \___attribute 'id' = 'location'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |        \___attribute 'id' = 'umolCO2m-2s-1'
        |     |     |___text '\n      '
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