Data Package Metadata   View Summary

Post-fire Variability in Siberian Alder in Interior Alaska: Distribution Patterns, Nitrogen Fixation Rates, and Ecosystem Consequences III - Nitrogen Fixation 2015

General Information
Data Package:
Local Identifier:knb-lter-bnz.743.3
Title:Post-fire Variability in Siberian Alder in Interior Alaska: Distribution Patterns, Nitrogen Fixation Rates, and Ecosystem Consequences III - Nitrogen Fixation 2015
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data set was collected as a part of Brian Houseman's MS Thesis, Post-fire Variability in Siberian Alder in Interior Alaska: Distribution Patterns, Nitrogen Fixation Rates, and Ecosystem Consequences (December 2017). Data include Siberian alder (Alnus viridis ssp. fruticosa) nodule nitrogen fixation rates. Data were collected on study plots established across two burn scars (2004 Boundary Fire and 1971 Wickersham Dome Fire) within the Yukon-Tanana Uplands ecoregion of interior Alaska. The data were collected in 2015.

Short Name:knb-lter-bnz.743.3
Publication Date:2020-03-01
For more information:
Visit: http://www.lter.uaf.edu/data/data-detail/id/743

Time Period
Begin:
2015-06-03
End:
2015-09-28

People and Organizations
Contact:Data Manager (Bonanza Creek LTER) [  email ]
Creator:Houseman, Brian R (Former Graduate Student)
Creator:Ruess, Roger W. (Primary Investigator)
Creator:Hollingsworth, Teresa Nettleton (LTER Co-Principal Investigator)
Organization:Bonanza Creek LTER
Associate:Ruess, Roger W. (Professor of Biology, Associated party)

Data Entities
Data Table Name:
743_nitfix_2015.csv
Description:
This dataset contains percent nitrogen and 15N atom percent measurements for Siberian alder (Alnus viridis ssp. fruticosa) nodules that were incubated in-situ with 15N gas during 2015 field surveys. N-fixation incubations and nodule smaples were conducted at study plots in the Boundary Fire (n=19) and Wickersham Dome Fire (n=21) that were also releve plant cover study plots from 2014 (re: releve_plots_2014.csv). Also within this dataset are soil moisture and soil temperature measurements collected during in-situ nodule incubations. This data set was collected as a part of Brian Houseman's MS Thesis.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-bnz/743/3/c370b6229315b0e77988dbd29003c024
Name:743_nitfix_2015.csv
Description:This dataset contains percent nitrogen and 15N atom percent measurements for Siberian alder (Alnus viridis ssp. fruticosa) nodules that were incubated in-situ with 15N gas during 2015 field surveys. N-fixation incubations and nodule smaples were conducted at study plots in the Boundary Fire (n=19) and Wickersham Dome Fire (n=21) that were also releve plant cover study plots from 2014 (re: releve_plots_2014.csv). Also within this dataset are soil moisture and soil temperature measurements collected during in-situ nodule incubations. This data set was collected as a part of Brian Houseman's MS Thesis.
Number of Columns:38

Table Structure
Object Name:743_nitfix_2015.csv
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Line Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 dateplot_idDOYramet_lramet_dQplantgrowth_statuscontrolcontrol_sourcePERNODNATPERCTLATPERNODN15_tempt1t2t3t4t5t6t7t8t9t10m1m2m3m4m5m6m7m8m9m10start_timeend_timenotesstand_type
Column Name:date  
plot_id  
DOY  
ramet_l  
ramet_d  
Q  
plant  
growth_status  
control  
control_source  
PERNODN  
ATPERCTL  
ATPERNOD  
N15_temp  
t1  
t2  
t3  
t4  
t5  
t6  
t7  
t8  
t9  
t10  
m1  
m2  
m3  
m4  
m5  
m6  
m7  
m8  
m9  
m10  
start_time  
end_time  
notes  
stand_type  
Definition:date nitrogen fixation was sampledplot identifierjulian caldendar day of yearnumber of live ramets for the plant sampled for n-fix or serving as controlnumber of dead ramets for plant sampled for nitfix or serving as controlquarter in which sample was collectedthe 'plant number' designation given only to plants that were either sampled for nitfix or served as controls for nitfix sampling.recruited (seeded after fire), regenerative (regenerated from pre-existing alder genet centroid after fire), unburned (was not burned by the fire - no evidence of fire).identifier used to indicate the control sample associated with the recordindicates whether the record was the control sample for the given plot_id; 0 = not a control (i.e., an experimental sample), 1 = a control sample for the plotpercent nitrogen within the nodule sample15N atom percent in associated control nodules15 N atom percent in experimental nodulestemperature of the incubation chambersoil temperature where nodules were locatedsoil temperature where nodules were locatedsoil temperature where nodules were locatedsoil temperature where nodules were locatedsoil temperature where nodules were locatedsoil temperature where nodules were locatedsoil temperature where nodules were locatedsoil temperature where nodules were locatedsoil temperature where nodules were locatedsoil temperature where nodules were locatedsoil moisture where nodules were locatedsoil moisture where nodules were locatedsoil moisture where nodules were locatedsoil moisture where nodules were locatedsoil moisture where nodules were locatedsoil moisture where nodules were locatedsoil moisture where nodules were locatedsoil moisture where nodules were locatedsoil moisture where nodules were locatedsoil moisture where nodules were locatedstart time of nodule incubationend time of nodule incubationnotes related to nodule collection and incubation and soil moisture and temperatre methodsstand type as determined by hierarchical clustering and indicator species analysis
Storage Type:string  
string  
integer  
integer  
integer  
integer  
integer  
string  
string  
integer  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
float  
integer  
integer  
integer  
integer  
integer  
integer  
integer  
integer  
integer  
integer  
string  
string  
string  
string  
Measurement Type:rationominalratioratiorationominalnominalnominalnominalnominalratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratiorationominalnominal
Measurement Values Domain:
Unityyyy-mm-dd
Typereal
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBF
Definition Boundary Fire; WDF = Wickersham Dome Fire;
Source
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Definitionquarter in which sample was collected
Definitionthe 'plant number' designation given only to plants that were either sampled for nitfix or served as controls for nitfix sampling.
Definitionrecruited (seeded after fire), regenerative (regenerated from pre-existing alder genet centroid after fire), unburned (was not burned by the fire - no evidence of fire).
Definitionidentifier used to indicate the control sample associated with the record
Definitionindicates whether the record was the control sample for the given plot_id; 0 = not a control (i.e., an experimental sample), 1 = a control sample for the plot
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unit?
Typereal
Unit?
Typereal
Unit?
Typereal
Unit?
Typereal
Unit?
Typereal
Unit?
Typereal
Unit?
Typereal
Unit?
Typereal
Unit?
Typereal
Unit?
Typereal
Unit?
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unitdimensionless
Typereal
Unit24-hourtime
Typereal
Unit24-hourtime
Typereal
Definitionnotes related to nodule collection and incubation and soil moisture and temperatre methods
Definitionstand type as determined by hierarchical clustering and indicator species analysis
Missing Value Code:      
CodeNA
ExplMissing Value
CodeNA
ExplMissing Value
   
CodeNA
ExplMissing Value
CodeNA
ExplMissing Value
 
CodeNA
ExplMissing Value
CodeNA
ExplMissing Value
CodeNA
ExplMissing Value
CodeNA
ExplMissing Value
                                       
CodeNA
ExplMissing Value
CodeNA
ExplMissing Value
CodeNA
ExplMissing Value
 
Accuracy Report:                                                                            
Accuracy Assessment:                                                                            
Coverage:                                                                            
Methods:                                                                            

Data Package Usage Rights

Data Use

This work has been produced as part of the Long Term Ecological Research Program and data users should adhere to the Data Use Agreement of the Long Term Ecological Research Network.

Citation

It is considered a matter of professional ethics to acknowledge the work of other scientists. Thus, the Data User should properly cite the Data Set in any publications or in the metadata of any derived data products that were produced using the Data Set. Citation should take the following general form: Creator(s), Year of Data Publication, Title of Dataset, Publisher, Dataset identifier, Dataset URL, Dataset DOI. For Example: Van Cleve, Keith; Chapin, F. Stuart; Ruess, Roger W. 2016. Bonanza Creek Experimental Forest: Hourly Temperature (sample, min, max) at 50 cm and 150 cm from 1988 to Present, Bonanza Creek LTER - University of Alaska Fairbanks. BNZ:1, http://www.lter.uaf.edu/data/data-detail/id/1. doi:10.6073/pasta/725db90d86686be13e6d6b2da5d61217.

Acknowledgement

The Data User should acknowledge any institutional support or specific funding awards referenced in the metadata accompanying this dataset in any publications where the Data Set contributed significantly to its content. Acknowledgements should identify the supporting party, the party that received the support, and any identifying information such as grant numbers. For example: Data are provided by the Bonanza Creek LTER, a partnership between the University of Alaska Fairbanks, and the U.S. Forest Service. Significant funding for collection of these data was provided by the National Science Foundation Long-Term Ecological Research program (NSF Grant numbers DEB-1636476, DEB-1026415, DEB-0620579, DEB-0423442, DEB-0080609, DEB-9810217, DEB-9211769, DEB-8702629) and by the USDA Forest Service, Pacific Northwest Research Station (Agreement # RJVA-PNW-01-JV-11261952-231).

Notification

The Data User will notify the Data Set Contact when any derivative work or publication based on or derived from the Data Set is distributed.

Collaboration

The Data Set has been released in the spirit of open scientific collaboration. Data Users are thus strongly encouraged to consider consultation, collaboration and/or co-authorship with the Data Set Creator.

Disclaimer

While substantial efforts are made to ensure the accuracy of data and documentation contained in this Data Set, complete accuracy of data and metadata cannot be guaranteed. All data and metadata are made available in its present condition. The Data User holds all parties involved in the production or distribution of the Data Set harmless for damages resulting from its use or interpretation.

Additional Acknowledgements

This research was supported in part by a UAF Center for Global Change Student Research Grant with funds from the UAF Center for Global Change; the Bonanza Creek Long-Term Ecological Research Program which is funded by the National Science Foundation (award number DEB-1026415); and the USDA Forest Service, Pacific Northwest Research Station (RJVA-PNW-01-JV-11261952-231)

Keywords

By Thesaurus:
Vegetationboreal forests, nitrogen fixation, boreal forests, fires, nitrogen fixation, nitrogen, fires, nitrogen, Alnus viridis, Alnus viridis, nitrogen balance, nitrogen balance, Siberian alder, Siberian alder, ecosystem consequences, ecosystem consequences

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Experimental Design

This study was designed to assess Siberian alder N-fixation input variability across post-fire age, fire severity levels, and stand types. Study plots were randomly located to capture the variability of environmental factors across the landscape. Detailed site information for each research location in this study is available within the BNZ-LTER Data Set entitled Post-fire Variability in Siberian Alder in Interior Alaska: Distribution Patterns, Nitrogen Fixation Rates, and Ecosystem Consequences X - Research Project Site Information 2014.

Methods

FIELD: A subsample of the 2014 alder density plots was chosen for N-fixation sampling between June 29th and July 29th of 2015. The 2014 plots were stratified by burn scar and stand type. We alternated sampling between burn scars daily so that sampling dates for each burn scar were evenly spread throughout the 30-day sampling period. On each day we randomly selected a stand type and then randomly selected a plot within the chosen stand type for measurement. This method of selecting plots controlled for variation in N-fixation activity throughout the day and throughout the 30-day sampling period. We subsampled as many of the 2014 plots as possible during the 30-day sampling period. Within the BF, nodules from 48 alders across 19 plots and four stand types were sampled for N-fixation, and in the WDF, nodules from 48 alders across 21 plots and three stand types were sampled. At each plot, experimental or control nodules were collected from alders of representative height and vigor. Experimental nodules were then incubated in 15N2 gas following previously established methods for alder nodule 15N2 uptake. Experimental and control nodules from individual alders were separately stored in 5 ml cryovials which were preserved in liquid nitrogen during transfer from the field to the lab. LAB: The N-fixation rate was measured using a 15N2 uptake method (Anderson et al. 2004, Ruess et al. 2009, and Ruess et al. 2013). A nodule sample was excavated within 10 minutes immediately adjacent to an individual alder, at a random vector from the centroid, and taken from the organic horizon. Approximately 1 gram of live nodule was cut away from the root and placed in a vacuum-sealed polyethylene syringe containing 50ml of ambient air. Exactly 10ml of 99 atom % 15N2 gas was injected into the incubation syringe, and the syringe was placed beneath the litter layer at the same depth the nodules were located. Following ten minutes of incubation, the enriched nodules were cleaned thoroughly of root and dirt using very delicate brush, and deionized water. Immediately after rinsing, nodules were placed into cryovials, frozen in liquid N2. A plot control sample was collected in the same manner, however, not incubated in the 99 atom % 15N2 atmosphere. In the laboratory, nodule samples were oven-dried at 65 deg C and ground and pulverized before mass spectrometry analysis on a Sercon stable isotope mass spectrometer (Sercon Limited, Crewe, Cheshire, UK) for both total nitrogen (atom % N) and 15N (atom % 15N) content. The APE equation follows as: APEnodule = 15Nenriched nodules - 15Ncontrol nodules where both 15N content measures are in atom %. Determination of atom percent enrichment (APE) for each nodule sample was determined using the same methods outlined in Ruess et al. 2006 and Ruess et al. 2009. By combining APE with total nodule N content, dividing by incubation time, and correcting for the composition of the initial incubation atmosphere, we calculated the specific N fixation activity of the nodule samples (SNF = micromole N assimilated x gDWT nodule-1 x h-1) as follows: SNF = (APEnodule x % Nnodule) (incubation time (h) x % 15Natomsphere) where % Nnodule is the mass percent N content of the enriched nodule sample and %15Natmosphere is the atom percent 15N content of the incubation atmosphere at the beginning of the incubation.

Sampling Area and Study Extent
Sampling Description:

Sampling Frequency

One time

Sampling Extent:

Time Period
Begin:
2015-06-03
End:
2015-09-28

People and Organizations

Publishers:
Organization:Bonanza Creek LTER
Address:
Boreal Ecology Cooperative Research Unit ,
University of Alaska Fairbanks,
P.O. Box 756780 ,
Fairbanks, AK 99775 USA
Phone:
907-474-6364 (voice)
Phone:
907-474-6251 (fax)
Creators:
Individual: Brian R Houseman
Position:Former Graduate Student
Email Address:
bhouseman@abrinc.com
Individual: Roger W. Ruess
Position:Primary Investigator
Address:
Institute of Arctic Biology University of Alaska Fairbanks P.O. Box 757000,
Fairbanks, AK 99775-0180 United States
Phone:
(907) 474-7153 (voice)
Phone:
(907) 474-6967 (fax)
Email Address:
rwruess@alaska.edu
Web Address:
http://people.iab.uaf.edu/roger_ruess
Individual: Teresa Nettleton Hollingsworth
Position:LTER Co-Principal Investigator
Address:
Boreal Ecology Cooperative Research Unit, PNW Research Station, USDA Forest Service, P.O. Box 756780,University of Alaska Fairbanks,
Fairbanks, AK 99775 United States
Phone:
(907) 474-2424 (voice)
Phone:
(907) 474-6251 (fax)
Email Address:
thollingsworth@fs.fed.us
Web Address:
http://www.becru.uaf.edu/personnel/Teresa.htm
Organization:Bonanza Creek LTER
Address:
Boreal Ecology Cooperative Research Unit ,
University of Alaska Fairbanks,
P.O. Box 756780 ,
Fairbanks, AK 99775 USA
Phone:
907-474-6364 (voice)
Phone:
907-474-6251 (fax)
Email Address:
uaf-bnz-im-team@alaska.edu
Web Address:
http://www.lter.uaf.edu
Contacts:
Organization:Bonanza Creek LTER
Position:Data Manager
Address:
Boreal Ecology Cooperative Research Unit ,
University of Alaska Fairbanks,
P.O. Box 756780 ,
Fairbanks, AK 99775 USA
Phone:
907-474-6364 (voice)
Phone:
907-474-6251 (fax)
Email Address:
uaf-bnz-im-team@alaska.edu
Web Address:
http://www.lter.uaf.edu
Associated Parties:
Individual: Roger W. Ruess
Position:Professor of Biology
Address:
Institute of Arctic Biology University of Alaska Fairbanks P.O. Box 757000,
Fairbanks, AK 99775-0180 United States
Phone:
(907) 474-7153 (voice)
Phone:
(907) 474-6967 (fax)
Role:Associated party
Metadata Providers:
Organization:Bonanza Creek LTER
Position:Data Manager
Address:
Boreal Ecology Cooperative Research Unit ,
University of Alaska Fairbanks,
P.O. Box 756780 ,
Fairbanks, AK 99775 USA
Phone:
907-474-6364 (voice)
Phone:
907-474-6251 (fax)
Email Address:
uaf-bnz-im-team@alaska.edu
Web Address:
http://www.lter.uaf.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2015-06-03
End:
2015-09-28
Geographic Region:
Description:Dataset geographic description information is unavailable. {datafile/geoCoverage is empty}
Bounding Coordinates:
Northern:  65.422555Southern:  64.961855
Western:  -148.185888Eastern:  -145.806556

Project

Parent Project Information:

Title:The Bonanza Creek LTER
Personnel:
Individual: Keith Van Cleve
Organization:Bonanza Creek LTER
Position:Lead Principal Investigator
Role:Principal Investigator
Individual: F.S. Stuart Chapin
Organization:Bonanza Creek LTER
Position:Lead Principal Investigator
Address:
Department of Biology and Wildlife; Institute of Arctic Biology: University of Alaska Fairbanks 193 Arctic Health P.O. Box 757000,
Fairbanks, AK 99775 United States
Phone:
(907) 455-6408 (voice)
Phone:
(907) 474-6967 (fax)
Email Address:
terry.chapin@alaska.edu
Web Address:
http://terrychapin.org/
Role:Principal Investigator
Individual: Roger W. Ruess
Organization:Bonanza Creek LTER
Position:Lead Principal Investigator
Address:
Institute of Arctic Biology University of Alaska Fairbanks P.O. Box 757000,
Fairbanks, AK 99775-0180 United States
Phone:
(907) 474-7153 (voice)
Phone:
(907) 474-6967 (fax)
Email Address:
rwruess@alaska.edu
Web Address:
http://www.iab.uaf.edu/~roger_ruess/
Role:Principal Investigator
Funding:

NSF Grant numbers DEB-1636476, DEB-1026415, DEB-0620579, DEB-0423442, DEB-0080609, DEB-9810217, DEB-9211769, DEB-8702629

USDA Forest Service, Pacific Northwest Research Station (Agreement # RJVA-PNW-01-JV-11261952-231)

Maintenance

Maintenance:
Description:

additional

Instrumentation: Sercon stable isotope mass spectrometer (Sercon Limited, Crewe, Cheshire, UK). Data Credits: Karl Olson (BNZ LTER), Lola Oliver (UAF Forest Soils Lab), B'Elanna Rhodehamel (Field Assistant)

Status

Completed

Frequency:
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |        \___attribute 'id' = '24-hourtime'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |        \___attribute 'id' = '?'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |        \___attribute 'id' = 'yyyy-mm-dd'
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

UNM logo UW-M logo