Data Package Metadata   View Summary

Count data of air-breathing fauna from visual transect surveys including water temperature, time, sea and weather conditions in Shark Bay Marine Park, Western Australia from February 2008 to July 2014

General Information
Data Package:
Local Identifier:knb-lter-fce.1191.5
Title:Count data of air-breathing fauna from visual transect surveys including water temperature, time, sea and weather conditions in Shark Bay Marine Park, Western Australia from February 2008 to July 2014
Alternate Identifier:ST_TDCS_Heithaus_002
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This dataset provides information on the relative abundances of air breathing fauna (dugongs, dolphins, sea snakes, marine birds, and sea turtles) in the study area of the Eastern Gulf of Shark Bay, Western Australia. The dataset comprises transects that quantify animal abundances in three microhabitats (shallow seagrass banks, seagrass bank edges, and deep sandy channels). These microhabitats vary in their food supply as well as their potential to facilitate or inhibit detection and escape from predators, mainly the tiger shark (Galeocerdo cuvier). As a result these data have been used to examine risk-specific habitat use behaviors of these fauna, in addition to general abundance estimates.

Publication Date:2019-12-03

Time Period
Begin:
2008-02-25
End:
2014-07-21

People and Organizations
Contact:Michael, Dr (Heithaus, Co- PI) [  email ]
Contact:Robert(Nowicki, Graduate Student) [  email ]
Creator:Heithaus, Michael (Florida International University, BBC, MSB 250A, coPI)
Creator:Nowicki, Robert (Florida Internatiional University, BBC, MSB 250J, Graduate Student)
Associate:Heithaus, Mike (Florida International University, BBC, MSB 334, Principle Investigator)
Associate:Wirsing, Aaron (Florida International University, BBC, MSB 334, Co-Principle investigator)
Associate:Burkholder, Derek (Florida International University, BBC, MSB 334, Graduate student)
Associate:Vaudo, Jeremy (Florida International University, BBC, MSB 334, Graduate student)
Associate:Cameron, Katy (Florida International University, BBC, MSB 334, Graduate student)
Associate:Dunphy-Daly, Meagan (Florida International University, BBC, MSB 334, Graduate student)
Associate:Thomson, Jordy (Florida International University, BBC, MSB 334, Graduate student/ Postdoctoral researcher)
Associate:Gastrich, Kirk (Florida International University, BBC, MSB 334, Laboratory Manager)
Associate:Nowicki, Robert (Florida International University, BBC, MSB 334, Graduate Student)

Data Entities
Data Table Name:
ST_TDCS_Heithaus_002.txt
Description:
Count data of air-breathing fauna from visual transect surveys including water temperature, time, sea and weather conditions in Shark Bay Marine Park, Western Australia from February 2008 to July 2014
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-fce/1191/5/571d43211ba05ba4d29effccbe20a69b
Name:ST_TDCS_Heithaus_002.txt
Description:Count data of air-breathing fauna from visual transect surveys including water temperature, time, sea and weather conditions in Shark Bay Marine Park, Western Australia from February 2008 to July 2014
Number of Records:1714
Number of Columns:37

Table Structure
Object Name:ST_TDCS_Heithaus_002.txt
Size:319 KB
Authentication:6e12679303f3396bd866d40e229fc89b Calculated By MD5
Character Encoding:ASCII
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 dateyearmonthdayfocal zonehabitat typeseasoncountcountcountcountcountlengthlengthareadepthquantitytimetimeduration (minutes)durationdurationLat/Long coordinateLat/Long coordinateLat/Long coordinateLat/Long coordinateweather conditionsNotes on Beaufort weather conditionsvisibility% cloud covernotes on % cloud coverdirection and intensitytidetimedepthtimedepth
Column Name:date  
year  
month  
day  
FZ_st  
HAB_st  
Season  
Dolphin  
Dugong  
Seasnake  
Cormorant  
Turtle  
TRlng_m  
TRlng_km  
Trarea  
Trdepth  
Obs  
Time_S  
Time_E  
min_out  
Raw_Time  
Total_min  
Start_GPS_S  
Start_GPS_E  
End_GPS_S  
End_GPS_E  
Beaufort  
Beaufort_Notes  
VIS  
Cloud_cov  
Cloud_cov_notes  
Glare  
Tide  
Low  
Lo_Level  
High  
Hi_Level  
Definition:date transect was runyear transect was runmonth transect was runday of month transect was runstandardized focal zonestandardized habitat typeseason (warm or cool)Number of indo-pacific bottlenose dolphins sighted on transectnumber of dugongs sighted on transectnumber of seasnakes of any species sighted on transectnumber of pied cormorants sighted on transectnumber of sea turtles sighted on transectlength of transect in meterslength of transect in kilometersarea of transect (total area of sighting band)average depth of water over transect lengthnumber of human observers on vesseltime of transect starttime of transect endnumber of minutes wherein transect was interruptedraw total time, including minutes out of transecttotal number of minutes on transect, excluding minutes during which transect was interruptedLatitude coordinate of transect start in decimal degreesLongitude coordinate of transect start in decimal degreesLatitude coordinate of transect end in decimal degreesLongitude coordinate of transect end in decimal degreesBeaufort weather scale conditions at deployNotes on Beaufort weather conditionssurface visibility% cover of clouds notes on % cloud coverdirection and intensity of glaretidal flow during transect runtime of the day's low tideheight of low tide based on lowest astronomical tide (LAT)time of the day's high tideheight of high tide based on Lowest Astronomical Tide (LAT)
Storage Type:datetime  
ordinal  
ordinal  
ordinal  
nominal  
text  
text  
data  
data  
data  
data  
data  
data  
data  
data  
data  
data  
datetime  
datetime  
datetime  
datetime  
datetime  
coordinate  
coordinate  
coordinate  
coordinate  
ordinal  
text  
text  
data  
text  
text  
text  
datetime  
data  
datetime  
data  
Measurement Type:dateTimeordinalordinalordinalnominalnominalnominalratioratioratioratioratioratioratioratioratioratiodateTimedateTimedateTimedateTimedateTimeordinalordinalordinalordinalordinalnominalnominalrationominalnominalnominaldateTimeratiodateTimeratio
Measurement Values Domain:
FormatYYYY-MM-DD
Precision
Definitionyear transect was run
Definitionmonth transect was run
Definitionday of month transect was run
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
Definition shallow bank 1
Source
Code Definition
Code 2
Definitiondeep channel 2
Source
Code Definition
Code 3
Definitionshallow bank 3
Source
Code Definition
Code 4
Definition deep channel 4
Source
Code Definition
Code 5
Definition deep channel 5
Source
Code Definition
Code 6
Definitionshallow bank 6
Source
Code Definition
Code8
Definition deep sand plain 8
Source
Code Definition
Code 10
Definition shallow bank 10
Source
Code Definition
Code 11
Definition deep channel 11
Source
Code Definition
Code 12
Definition shallow bank 12
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codeshallow
Definition average depth <2.5m
Source
Code Definition
Code deep
Definition average depth ~10m
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codecool
Definition june 1 to August 15
Source
Code Definition
Code warm
Definition August 16 to May 31
Source
Unitnumber
Precision1
Typeinteger
Unitnumber
Precision1
Typereal
Unitnumber
Precision1
Typereal
Unitnumber
Precision1
Typereal
Unitnumber
Precision1
Typereal
Unitmeter
Precision0.001
Typereal
Unitkilometer
Precision0.001
Typereal
UnitsquareKilometers
Precision0.001
Typereal
Unitmeter
Precision0.001
Typereal
Unitnumber
Precision1
Typeinteger
Formathh:mm
Precision
Formathh:mm
Precision
Formatminute
Precision
Formatminute
Precision
Formatminute
Precision
DefinitionLatitude coordinate of transect start in decimal degrees
DefinitionLongitude coordinate of transect start in decimal degrees
DefinitionLatitude coordinate of transect end in decimal degrees
DefinitionLongitude coordinate of transect end in decimal degrees
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
Definitionlight air, 1.5
Source
DefinitionNotes on Beaufort weather conditions
Definitionsurface visibility
Unitpercent
Precision0.01
Typereal
Definitionnotes on % cloud cover
Definitiondirection and intensity of glare
Definitiontidal flow during transect run
Formathh:mm
Precision
Unitmeter
Precision0.01
Typereal
Formathh:mm
Precision
Unitmeter
Precision0.01
Typereal
Missing Value Code:              
Code-9999
ExplValue will never be recorded
Code-9999
ExplValue will never be recorded
Code-9999
ExplValue will never be recorded
Code-9999
ExplValue will never be recorded
Code-9999
ExplValue will never be recorded
Code-9999.000
ExplValue will never be recorded
Code-9999.000
ExplValue will never be recorded
Code-9999.000
ExplValue will never be recorded
Code-9999.000
ExplValue will never be recorded
Code-9999
ExplValue will never be recorded
   
Code-9999
ExplValue will never be recorded
Code-9999
ExplValue will never be recorded
Code-9999
ExplValue will never be recorded
Code-9999.00000
ExplValue will never be recorded
Code-9999.00000
ExplValue will never be recorded
Code-9999.00000
ExplValue will never be recorded
Code-9999.00000
ExplValue will never be recorded
Code-9999.0
ExplValue will never be recorded
CodeNA
ExplValue will never be recorded
CodeNA
ExplValue will never be recorded
Code-9999
ExplValue will never be recorded
 
CodeNA
ExplNo usable data recorded
CodeNA
ExplNo usable data recorded
CodeNA
ExplData not collected/recorded
Code-9999.00
ExplValue will never be recorded
CodeNA
ExplData not collected/recorded
Code-9999.00
ExplValue will never be recorded
Accuracy Report:                                                                          
Accuracy Assessment:                                                                          
Coverage:                                                                          
Methods:                                                                          

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Thesauruspopulations, birds, mammals, reptiles, marine
FCE Keyword ListShark Bay Eastern Gulf, World Heritage Site, ecological research, long-term monitoring

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Visual transect surveys for air breathing fauna

Citation:
Title:The ecological importance of intact top-predator populations: a synthesis of 15 years of research in a seagrass ecosystem.
Publication Date:1905-07-04

Author(s):

Individual: Michael R. Heithaus
Individual: Aaron J. Wirsing
Individual: Larry M. Dill
Article:
Journal:Marine and Freshwater Research
Volume:63
Page Range:1039-1050
Instrument(s):Human observers on a 4.5 to 5.5 research vessel
Description:

Water temperature collected at transect start

Instrument(s):Ship-based transducer
Description:

Weather conditions collected at transect start

Instrument(s):Human observer
Sampling Area and Study Extent
Sampling Description:

Visual transect surveys for air breathing fauna

Sampling Area And Frequency:

Eastern Gulf of Shark Bay, Western Australia, North of Monkey Mia

Sampling Unit Location:
Geographic Region:
Description:Shallow seagrass banks and channels immediately north of Monkey Mia, Shark Bay
Bounding Coordinates:
Northern:  -25.721Southern:  -25.808
Western:  113.662Eastern:  113.796
Sampling Unit Location:
Geographic Region:
Description:Shallow seagrass banks and channels immediately north of Monkey Mia, Shark Bay
Bounding Coordinates:
Northern:  -25.721Southern:  -25.808
Western:  113.662Eastern:  113.796
Sampling Unit Location:
Geographic Region:
Description:Shallow seagrass banks and channels immediately north of Monkey Mia, Shark Bay
Bounding Coordinates:
Northern:  -25.721Southern:  -25.808
Western:  113.662Eastern:  113.796
Quality Control
Quality Control Step 1: 
Description:

Data are checked against field notes and datasheets after entry. Data are visually inspected by graduate students and the PI to determine if any values are obviously in error.

People and Organizations

Publishers:
Organization:Florida Coastal Everglades LTER Program
Address:
Florida International University,
University Park,
OE 148,
Miami, FL 33199 USA
Phone:
305-348-6054 (voice)
Email Address:
fcelter@fiu.edu
Web Address:
http://fcelter.fiu.edu
Creators:
Individual:Dr Michael Heithaus
Organization:Florida International University, BBC, MSB 250A
Position:coPI
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Phone:
305-919-5234 (voice)
Phone:
305-919-4030 (fax)
Email Address:
heithaus@fiu.edu
Web Address:
http://www.fiu.edu/~heithaus/
Id:http://orchid.org/0000-0002-3219-1003
Individual:Mr Robert Nowicki
Organization:Florida Internatiional University, BBC, MSB 250J
Position:Graduate Student
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Phone:
336-403-2722 (voice)
Email Address:
rnowi001@fiu.edu
Contacts:
Individual: Dr Michael
Organization:Heithaus
Position:Co- PI
Address:
FIU, BBC, MSB 250J, 3000 NE 151st Street,
North Miami, FL 33181 USA
Phone:
305-919-5234 (voice)
Phone:
305-919-4030 (fax)
Email Address:
heithaus@fiu.edu
Individual: Robert
Organization:Nowicki
Position:Graduate Student
Address:
FIU, BBC, MSB 250J, 3000 NE 151st Street,
North Miami, FL 33181 USA
Phone:
336-403-2722 (voice)
Email Address:
rnowi001@fiu.edu
Associated Parties:
Individual: Mike Heithaus
Organization:Florida International University, BBC, MSB 334
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Phone:
305-919-5234 (voice)
Email Address:
Heithaus@fiu.edu
Role:Principle Investigator
Individual: Aaron Wirsing
Organization:Florida International University, BBC, MSB 334
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Role:Co-Principle investigator
Individual: Derek Burkholder
Organization:Florida International University, BBC, MSB 334
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Role:Graduate student
Individual: Jeremy Vaudo
Organization:Florida International University, BBC, MSB 334
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Role:Graduate student
Individual: Katy Cameron
Organization:Florida International University, BBC, MSB 334
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Role:Graduate student
Individual: Meagan Dunphy-Daly
Organization:Florida International University, BBC, MSB 334
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Role:Graduate student
Individual: Jordy Thomson
Organization:Florida International University, BBC, MSB 334
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Role:Graduate student/ Postdoctoral researcher
Individual: Kirk Gastrich
Organization:Florida International University, BBC, MSB 334
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Role:Laboratory Manager
Individual: Robert Nowicki
Organization:Florida International University, BBC, MSB 334
Address:
3000 NE 151 St,
North Miami, FL 33181 USA
Phone:
336-403-2722 (voice)
Email Address:
RNOWI001@FIU.EDU
Role:Graduate Student
Metadata Providers:
Organization:Florida International University
Address:
3000 NE 151st Street,
North Miami, FL 33181 USA
Phone:
305-919-5234 (voice)
Email Address:
Heithaus@fiu.edu
Web Address:
www.SBERP.org

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2008-02-25
End:
2014-07-21
Geographic Region:
Description:Eastern Gulf of Shark Bay, Western Australia. Study site is approximately 130 km2 in area and begins immediately north of Monkey Mia, in Shark Bay.
Bounding Coordinates:
Northern:  -25.721Southern:  -25.808
Western:  113.662Eastern:  113.796
Taxonomic Range:
Classification:
Rank Name:Species
Rank Value:Dugong dugon
Common Name:Dugong
Classification:
Rank Name:Species
Rank Value:Chelonia mydas
Common Name:Green Sea Turtle
Classification:
Rank Name:Species
Rank Value:Caretta caretta
Common Name:Loggerhead Sea Turtle
Classification:
Rank Name:Species
Rank Value:Hydrophis elegans
Common Name:Bar-bellied sea snake
Classification:
Rank Name:Species
Rank Value:Disteria major
Common Name:Olive-headed sea snake
Classification:
Rank Name:Species
Rank Value:Aipysurus pooleorum
Common Name:Shark Bay Sea Snake
Classification:
Rank Name:Species
Rank Value:Tursiops cf. aduncus
Common Name:Indo-pacific bottlenose dolphin
Classification:
Rank Name:Species
Rank Value:Phalacrocorax varius
Common Name:Pied Cormorant

Project

Parent Project Information:

Title:The ecological importance of intact top-predator populations
Personnel:
Individual: Mike Heithaus
Organization:Shark Bay Ecosystem Research Project
Address:
Department of Biological Sciences,
Florida International University,
Biscayne Bay Campus,
MSB 250A,
Miami, FL 33199 USA
Phone:
305-919-5234 (voice)
Email Address:
Heithaus@fiu.edu
Role:Lead Principal Investigator
Abstract:

We are investigating how the roles of apex predators (in this case, tiger sharks) can interact with large-scale climactic disturbances to influence the structure, function, and processes of seagrass ecosystems. This project investigates multiple questions related to this interaction, from primary produce recovery to apex predator population dynamics, including mutliple investigations into the effects of a large scale seagrass decline on tiger shark prey abundance, community composition, and behavior.

Funding:

National Science Foundation under Grant # 9910514

Study Area:
Study Area Coverage:
Geographic Region:
Description:The study area occupies approximately 130 km2 in the eastern gulf of Shark Bay, Western Australia, immediately north of Monkey Mia.
Bounding Coordinates:
Northern:  -25.721Southern:  -25.808
Western:  113.662Eastern:  113.796

Time Period
Begin:
2012-02-20
End:
2013-08-24
Related Project:
Title:Effects of ecosystem disturbance on food for safety trade-offs in a relatively pristine ecosystem
Personnel:
Individual: Mike Heithaus
Organization:Shark Bay Ecosystem Research Project
Address:
Department of Biological Sciences,
Florida International University,
Biscayne Bay Campus,
MSB 250A,
Miami, FL 33199 USA
Phone:
305-919-5234 (voice)
Email Address:
Heithaus@fiu.edu
Role:Lead Principal Investigator
Abstract:

We are investigating how apex predators (in this case, tiger sharks) can influence risk sensitive habitat use decisions of their prey in resoponse to a major resource decline. Prey often have to make choices between profitable yet dangerous foraging habitats, or safe yet impoverished habitats. These choices are known as food-for-safety trade offs. In light of a major seagrass disturbance in 2011, the nature of these food for safety trade offs has likely changed, with implications for the ecosystem in general. This project investigates how food for safety trade offs, as well as general populations of tiger shark prey, have changed.

Funding:

National Science Foundation under Grant # 9910514

Study Area:
Study Area Coverage:
Geographic Region:
Description:The study area occupies approximately 130 km2 in the eastern gulf of Shark Bay, Western Australia, immediately north of Monkey Mia.
Bounding Coordinates:
Northern:  -25.721Southern:  -25.808
Western:  113.662Eastern:  113.796

Time Period
Begin:
2012-02-20
End:
2013-08-24

Maintenance

Maintenance:
Description:

This is a Short-term environmental dataset collected in the Eastern Gulf of Shark Bay, Western Australia.

Frequency:
History:
scope:Making data publicly accessible
old value:Made changes to reflect metadata 'Read' only, no data download
change date:2019-12-03
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList' in ns 'http://www.xml-cml.org/schema/stmml-1.1' ('stmml:unitList')
        |     |     |  \___attribute 'schemaLocation' in ns 'http://www.w3.org/2001/XMLSchema-instance' ('xsi:schemaLocation') = 'eml://ecoinformatics.org/eml-2.1.0 http://fcelter.fiu.edu/data/eml_schema/eml-2.1.0/stmml.xsd'
        |     |     |___text '\n        '
        |     |     |___comment 'note that the unitTypes here are taken from the eml-unitDictionary.xml'
        |     |     |___text '\n        '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.1' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'percent'
        |     |     |     |  \___attribute 'multiplierToSI' = '1'
        |     |     |     |  \___attribute 'name' = 'percent'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.1' ('stmml:description')
        |     |     |     |     |___text 'ratio of two quantities as percent composition (1:100)'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'additionalDataset'
        |     |     |___text '\n        '
        |     |     |___element 'researchType'
        |     |     |     |___text 'Short-term'
        |     |     |___text '\n        '
        |     |     |___element 'DatasetDistributionTypeandRestrictions'
        |     |     |     |___text 'Type 2:  Dissertation Data-Not to be distributed to the public before 2019-02-14'
        |     |     |___text '\n        '
        |     |     |___element 'addDistribution'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'submissionDate'
        |     |     |     |     |___text '2014-07-23'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'LTERsites'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'sitename'
        |     |     |     |     |___text 'Shark Bay Marine Park'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'projectPermits'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'permit'
        |     |     |     |     |___text 'DEC Permit # SF009325 and # CE004018'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

UNM logo UW-M logo