Data Package Metadata   View Summary

Multiple Element Limitation in Northern Hardwood Ecosystems (MELNHE): Root biomass and growth responses to nitrogen and phosphorus

General Information
Data Package:
Local Identifier:knb-lter-hbr.374.6
Title:Multiple Element Limitation in Northern Hardwood Ecosystems (MELNHE): Root biomass and growth responses to nitrogen and phosphorus
Alternate Identifier:DOI PLACE HOLDER
Abstract:

The Multiple Element Limitation in Northern Hardwood Ecosystems (MELNHE) project studies N , P, and Ca acquisition and limitation of forest productivity through a series of nutrient manipulations in northern hardwood forests. This data set includes data testing effects of elevated N and P availability on fine root growth (using ingrowth cores) and biomass in the MELNHE project. Subsets of ingrowth cores were treated with nutrients differing from the plot-scale nutrient treatments to test fine root foraging.

Additional detail on the MELNHE project, including a datatable of site descriptions and a pdf file with the project description and diagram of plot configuration can be found in this data package: https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-hbr&identifier=344

These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.

Publication Date:2023-07-20
For more information:
Visit: DOI PLACE HOLDER

Time Period
Begin:
2010-08-01
End:
2018-10-31

People and Organizations
Contact:Hubbard Brook Ecosystem Study [  email ]
Creator:Fahey, Timothy J (Cornell University)
Creator:Li, Shiyi (Cornell University)
Creator:Shan, Shan (Miami University)
Creator:Fisk, Melany (Miami University)
Creator:Yanai, Ruth D (SUNY-ESF)
Creator:Blum, Joel (University of Michigan)

Data Entities
Data Table Name:
MELNHE_Roots
Description:
MELNHE biomass and ingrowth core data
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-hbr/374/6/7509d837399c6ca36c067008d5a6c0b4
Name:MELNHE_Roots
Description:MELNHE biomass and ingrowth core data
Number of Records:4364
Number of Columns:14

Table Structure
Object Name:MELNHE_Roots.csv
Size:334233 byte
Authentication:a0f484dd91cfe9573d4970c83de85a37 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 root_typedate_collecteddate_installedsitestandplotplot_trtcore_trtsubplotdepthactual_depthdiametermasslength
Column Name:root_type  
date_collected  
date_installed  
site  
stand  
plot  
plot_trt  
core_trt  
subplot  
depth_increment  
actual_depth  
diameter  
mass  
length  
Definition:Specifies type of root sample collected. Month and year of core collectionMonth and year of installation of ingrowth coresThree separate locations in central NH forest area of similar slope, aspect, and species composition, within which 4 plots are located50x50 m treatment (or control) areaCon (control), N, P, or NP fertilizer added annually to the plot beginning in June 2011; or Ca added one timeSpecifies material added to ingrowth core if different from soil originating from that plot. Apatite was added to soil from the same plot in mature forest cores; soil from other plots was used to construct some ingrowth cores in young forestSpecifies sampling locations within a plot. Three types of locations are used. 1) SS_A, SS_B, SS_C, or SS_D are approximately 5 x 5 m subplots where soil sampling work is concentrated within each plot; 2) numbers 1-12, including 3a, 3b, 3c, and 3d, are locations of permanent soil respiration collars; and 3) A1, A2, A3, B1, B2, B3, C1, C2, and C3 are 10x10m subplots in the 30x30m inner measurement area of each plotDepth increment of ingrowth coreActual depth sampled for 10-30 cm increments (the only increment in which it was not always possible to obtain the entire desired increment)Root diameter range in mmMass of roots per m2 ground arealength of roots per m2 ground area
Storage Type:string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
float  
float  
Measurement Type:nominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalratioratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codebiomass
Definitionstanding stock of roots in intact soil cores
Source
Code Definition
Codeingrowth
Definitionroot growth measured by allowing roots to colonize constructed ingrowth cores
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAug_2010
DefinitionAug_2010
Source
Code Definition
CodeAug_2014
DefinitionAug_2014
Source
Code Definition
CodeAug_2015
DefinitionAug_2015
Source
Code Definition
CodeAug_2016
DefinitionAug_2016
Source
Code Definition
CodeAug_2018
DefinitionAug_2018
Source
Code Definition
CodeOct_2018
DefinitionOct_2018
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeJune_2013
DefinitionJune_2013
Source
Code Definition
CodeOct_2017
DefinitionOct_2017
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBEF
DefinitionBartlett Experimental Forest
Source
Code Definition
CodeHB
DefinitionHubbard Brook Experimental Forest
Source
Code Definition
CodeJB
DefinitionJeffers Brook
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC1
DefinitionC1
Source
Code Definition
CodeC2
DefinitionC2
Source
Code Definition
CodeC3
DefinitionC3
Source
Code Definition
CodeC4
DefinitionC4
Source
Code Definition
CodeC5
DefinitionC5
Source
Code Definition
CodeC6
DefinitionC6
Source
Code Definition
CodeC7
DefinitionC7
Source
Code Definition
CodeC8
DefinitionC8
Source
Code Definition
CodeC9
DefinitionC9
Source
Code Definition
CodeHBM
DefinitionHBM
Source
Code Definition
CodeHBO
DefinitionHBO
Source
Code Definition
CodeJBM
DefinitionJBM
Source
Code Definition
CodeJBO
DefinitionJBO
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
Definition1
Source
Code Definition
Code2
Definition2
Source
Code Definition
Code3
Definition3
Source
Code Definition
Code4
Definition4
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeCon
Definitionno treatment
Source
Code Definition
CodeControl
Definitionno treatment
Source
Code Definition
CodeN
DefinitionN fertilizer treatment
Source
Code Definition
CodeNP
DefinitionN+P fertilizer treatment
Source
Code Definition
CodeP
DefinitionP fertilizer treatment
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codeapatite
Definitioncore contains soil from the same plot plus added apatite
Source
Code Definition
CodeN
Definitioncore contains soil transplanted from N plot
Source
Code Definition
Codenone
Definitioncore contains only soil from the same plot
Source
Code Definition
CodeNP
Definitioncore contains soil transplanted from NP plot
Source
Code Definition
CodeP
Definitioncore contains soil transplanted from P plot
Source
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0-10
Definition0-10 cm FF+mineral soil
Source
Code Definition
Code0-20
Definition0-20 = 0-20 FF+mineral soil
Source
Code Definition
Code10-30
Definition10-30 cm FF+mineral soil
Source
Code Definition
CodeFF
Definitionforest floor (Oe+Oa horizons)
Source
Code Definition
Codemin_0-10
Definition0-10 cm mineral soil
Source
Code Definition
Codemin_10-20
Definition10-20 cm mineral soil
Source
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1-5
Definition1-5 millimeters
Source
Code Definition
Code<1
Definitionless than 1 millimeter
Source
UnitgramPerMeterSquared
Typereal
UnitmeterPerMeterSquared
Typereal
Missing Value Code:    
CodeN/A
Explnot applicable to biomass cores
       
CodeN/A
Explnot applicable to biomass cores
CodeN/A
Explsubplot not used in this sampling method
 
CodeN/A
Explnot measured for this sampling method
 
Code-999.99
Explno data
CodeN/A
Explnot measured for this sampling method
Code-999.99
Explmissing data
Accuracy Report:                            
Accuracy Assessment:                            
Coverage:                            
Methods:                            

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
HBESallocation, apatite, co-limitation, Hubbard Brook Experimental Forest, White Mountain National Forest, LTER, HBR, MELNHE, Jeffers Brook, Bartlett Experimental Forest
LTER Controlled Vocabularyfine roots, nitrogen limitation, primary productivity, biomass, phosphorus

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Fine root biomass was measured in each plot in late August 2010 (pre-treatment) and in subsequent years by soil coring and manual dry sorting of live roots from soil. Multiple soil cores were collected in each plot from locations near our permanent soil respiration collars, adjusted to avoid large roots and rocks. After removing the litter layer (Oi horizon), a 5-cm diameter split-PVC pipe corer was hammered into the soil with a rubber mallet. The nominal depth of sampling was 30 cm but because of obstructions the actual depth of sampling averaged 27 cm. Each core was divided in the field into two depth increments, 0-10 cm (including the Oe and Oa horizon and usually some mineral material) and 10-30 cm (dominantly E and B mineral horizons with varying amounts of organic matter). Samples were transported to the lab for storage at -20 °C until laboratory processing.

Live fine roots were hand sorted from each sample; dead roots were distinguished by their dark color and low tensile strength. For roots in the 0-10 cm depth increment, fine root biomass was estimated from the diminishing root mass recovered during sequential, timed picking intervals. For this approach, we manually extracted roots from soil cores for four intervals of 10 minutes each, and the cumulative biomass extracted over time was predicted by fitting a logarithmic curve. Total fine root biomass was estimated at the point at which the predicted incremental root mass extracted in the next 10-minute time interval was <2% of the cumulative total. On average, this required 6 more picking intervals, representing a time savings of one hour per core. For 10-30 cm samples, which had less root mass, all roots were hand sorted from each core. Sorted roots were washed free of adhering soil on a fine sieve, dried to constant mass at 70 °C and weighed.

Ingrowth cores were installed in 3 mature forest stands (C7, C8, and C9; Table 1) in the Bartlett Experimental Forest. Each of these stands has four 1/4 ha (50 m x 50 m) treatment plots, treated annually beginning in spring 2011, with N (30 kg N/ha/yr as NH4NO3), P (10 kg P/ha/yr as NaH2PO4), N+P, or nothing (an untreated control).

Ingrowth cores were used to measure root growth and foraging for nutrients in mature and young forest stands. In mature stands, we estimated rates of fine root growth in each plot by using ingrowth cores containing soils from the same plot (i.e., C, N, P or NP), and we tested fine root foraging for P or Ca derived from added apatite.

Ingrowth cores were installed in mature stands in early June 2013 in four locations (soil sampling subplots SS-A, SS-B, SS-C, and SS-D) in each treatment plot. At each location, we collected 4 soil cores (5 cm in diameter, 25 cm depth). Soil was separated into three layers: forest floor (FF, consisting of Oe+Oa horizons), 0-10 cm mineral soil and 10- 20 cm mineral soil. Soil was prepared for filling each layer of the core holes in a plot by combining cores of the same layer with extra soil from that layer in the same plot, homogenizing, and passing through 5 mm mesh hardware cloth to remove roots and rocks. Two types of cores were prepared: apatite-treatment cores, each of which contained 6.4 g ground apatite (125 um) mixed evenly into mineral soil layers, and cores with no treatment, which contained soil from the plot with nothing additional added to it. We refilled each core hole with 10 cm of each of the two mineral layers and 5 cm of homogenized forest floor. We inserted a 5-cm diameter ring of hardware cloth in the top to mark the core location.

Mature forest ingrowth cores incubated in situ for 2 years to allow complete root colonization. During this time the cores were fertilized individually with equal amounts of N or P per m2 as the surrounding plot. In August 2015 all cores were extracted by re-coring the marked locations with a smaller diameter (4.5 cm) corer to a depth of 20 cm in the mineral soil. The cores were separated into three layers (forest floor, 0 – 10 cm mineral soil, and 10 – 20 cm mineral soil), transported to the lab, and stored at 4 °C for up to 2 weeks prior to further processing. Fine roots (< 1 mm) diameter were sorted from soils by hand, washed with tap water, and scanned. Fine root length was quantified with the Analyze Skeleton plugin (Niemisto and others 2005) in ImageJ (Schneider and others 2012). Dry root mass was measured after oven drying at 60 °C.

In young stands we estimated rates of fine root growth in each plot by using ingrowth cores containing soils from the same plot (i.e., C, N, P or NP), similar to mature forest stands. We also studied fine root foraging by "transplanting" soils from other treatment plots. Ingrowth cores were installed in young stands (C1 and C2) in October 2017 in the treated buffer zones. Soil cores were removed to 20 cm depth with a 5-cm diameter corer. Three steel rods (0.5 cm diameter) were positioned vertically on the wall of the core holes to assist with later retrieval. In each plot 10 holes were filled with soil taken from the same plot. In control plots additional holes were filled with soil from N, P, and NP treatment plots (10 holes per treatment), and in N and P plots additional holes were filled with soil from plots fertilized with the other nutrient (10 per treatment). Each ingrowth core was fertilized individually with equal amounts of N or P per m2 as the surrounding plot in early June 2018, and cores were collected using a 4-cm diameter corer in October 2018. Harvested ingrowth cores were returned to the laboratory cold and then frozen at -20 °C until processing. Live fine roots of 0-1 mm diameter were collected from each core, cleaned of adhering soil over a fine sieve, dried to constant mass at 70 °C and weighed.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Timothy J Fahey
Organization:Cornell University
Address:
Department of Natural Resource,
Cornell University,
Ithaca, NY 14853 USA
Email Address:
tjf5@cornell.edu
Id:https://orcid.org/0000-0003-1283-1162
Id:https://ror.org/05bnh6r87
Individual: Shiyi Li
Organization:Cornell University
Email Address:
sl2577@cornell.edu
Id:https://orcid.org/0000-0002-1451-7428
Id:https://ror.org/05bnh6r87
Individual: Shan Shan
Organization:Miami University
Address:
Miami University,
Department of Biology 212 Pearson Hall,
Oxford, OH 45056 US
Email Address:
sshan5@wisc.edu
Id:https://orcid.org/0000-0003-3916-8364
Id:https://ror.org/05nbqxr67
Individual: Melany Fisk
Organization:Miami University
Address:
Miami University,
Department of Biology 212 Pearson Hall,
Oxford, Ohio 45056 US
Email Address:
fiskmc@miamioh.edu
Id:https://orcid.org/0000-0003-4248-0180
Id:https://ror.org/05nbqxr67
Individual: Ruth D Yanai
Organization:SUNY-ESF
Email Address:
rdyanai@syr.edu
Id:https://orcid.org/0000-0001-6987-2489
Individual: Joel Blum
Organization:University of Michigan
Address:
University of Michigan Department: Department of Geological Sciences,
1100 N University Avenue,
Ann Arbor, MI 48109-1063 US
Email Address:
jdblum@umich.edu
Id:https://orcid.org/0000-0001-5389-8633
Id:https://ror.org/00jmfr291
Contacts:
Organization:Hubbard Brook Ecosystem Study
Email Address:
hbr-im@lternet.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2010-08-01
End:
2018-10-31
Geographic Region:
Description:Bartlett Experimental Forest MELNHE Plots
Bounding Coordinates:
Northern:  44.061Southern:  44.036
Western:  -71.323Eastern:  -71.265
Geographic Region:
Description:Hubbard Brook Experimental Forest Watershed 101 MELNHE Plots
Bounding Coordinates:
Northern:  43.939Southern:  43.9355
Western:  -71.7404Eastern:  -71.7369
Geographic Region:
Description:Jeffers Brook MELNHE Plots
Bounding Coordinates:
Northern:  44.038Southern:  44.034
Western:  -71.891Eastern:  -71.888

Project

Parent Project Information:

Title:Multiple Element Limitation in Northern Hardwood Ecosystems
Personnel:
Individual: Timothy J Fahey
Organization:Cornell University
Address:
Department of Natural Resource,
Cornell University,
Ithaca, NY 14853 USA
Email Address:
tjf5@cornell.edu
Id:https://orcid.org/0000-0003-1283-1162
Id:https://ror.org/05bnh6r87
Role:Investigator
Individual: Melany Fisk
Organization:Miami University
Address:
Miami University,
Department of Biology 212 Pearson Hall,
Oxford, Ohio 45056 US
Email Address:
fiskmc@miamioh.edu
Id:https://orcid.org/0000-0003-4248-0180
Id:https://ror.org/05nbqxr67
Role:Investigator
Individual: Ruth D Yanai
Organization:SUNY-ESF
Email Address:
rdyanai@syr.edu
Id:https://orcid.org/0000-0001-6987-2489
Role:Investigator
Additional Award Information:
Funder:National Science Foundation
Number:0949324
Title:Collaborative Research: Nutrient co-limitation in young and mature northern hardwood forests
Additional Award Information:
Funder:USDA National Institute of Food and Agriculture
Number:2019-67019-29464
Title:Soil Nutrient Limitation of Northern Hardwood Forest Productivity: Mechanisms Contributing to N and P co-Limitations (2019)
Additional Award Information:
Funder:National Science Foundation
Number:1114804
Title:Long-Term Ecological Research at Hubbard Brook Experimental Forest (2010)
Additional Award Information:
Funder:National Science Foundation
Number:1637685
Title:LTER: Long Term Ecological Research at the Hubbard Brook Experimental Forest (2016)

Maintenance

Maintenance:
Description:

This project is ongoing

Frequency:asNeeded
Other Metadata

Additional Metadata

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Additional Metadata

additionalMetadata
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EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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