Data Package Metadata   View Summary

Lizard Trapping Data from NPP Sites on the Jornada Basin, 1989-2006

General Information
Data Package:
Local Identifier:knb-lter-jrn.210007001.41
Title:Lizard Trapping Data from NPP Sites on the Jornada Basin, 1989-2006
Alternate Identifier:DOI PLACE HOLDER
Abstract:

In conjunction with net primary production studies, consumer and faunal studies were conducted at or near NPP sites using pitfall traps. We used live traps, not employing ethylene glycol or other killing/preservative agents, with traps checked once a week at the minimum. Sampling-with-replacement was used with the lizards. Variables measured included species, sex, recapture status, snout-vent length, total length, weight, and whether tail was broken or whole.

Short Name:lizard_pitfall_traps
Publication Date:2019-06-28
Language:English

Time Period
Begin:
1989-01-01
End:
2006-12-31

People and Organizations
Contact:Manager, Data (datamanager.jrn.lter@gmail.com) 
Creator:Lightfoot, David 

Data Entities
Data Table Name:
JornadaStudy_007_npp_lizard_pitfall_trap_data
Description:
Data file information for the following Jornada data set: Lizard pitfall trap data (LTER-II, LTER-III)
Other Name:
lizard code list
Description:
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210007001/41/21cc9e0b7c5d27d1efd8d5e1db3ac4f1
Name:JornadaStudy_007_npp_lizard_pitfall_trap_data
Description:Data file information for the following Jornada data set: Lizard pitfall trap data (LTER-II, LTER-III)
Number of Columns:14

Time Period
Begin:
1989-06-16
End:
2006-08-18

Table Structure
Object Name:JornadaStudy_007_npp_lizard_pitfall_trap_data.csv
Size:187078
Text Format:
Number of Header Lines:49
Number of Foot Lines:0
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 date of collectionvegetation zoneresearch siteplotpitfall trap numberspecies codesexrecapture statustoe mark numbersnout vent lengthtotal lengthbody weightcondition of tailproblem code
Column Name:date  
zone  
site  
plot  
pit  
spp  
sex  
rcap  
toe_num  
SV_length  
total_length  
weight  
tail  
pc  
Definition:Date data was collected (mm/dd/yy, where mm=Month, dd=Day, and yyyy=Year)Vegetation zoneResearch sitePlot identifier (A,B,C,D)Pitfall trap number (1-16)Lizard species codeSex (gender)RecaptureToe mark number NOTE: Toe mark number replaced by tail mark beginning 03/16/1995.Snout-vent lengthTotal lengthBody weightTail conditionProblem code
Storage Type:date  
string  
string  
string  
string  
string  
string  
string  
string  
      string  
string  
Measurement Type:dateTimenominalnominalnominalnominalnominalnominalnominalnominalratioratiorationominalnominal
Measurement Values Domain:
FormatMM/DD/YYYY
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC
Definitioncreosotebush
Source
Code Definition
CodeG
Definitiongrassland
Source
Code Definition
CodeM
Definitionmesquite
Source
Code Definition
CodeT
Definitiontarbush
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeCALI
DefinitionCaliche creosotebush site
Source
Code Definition
CodeGRAV
DefinitionGravel creosotebush site
Source
Code Definition
CodeSAND
DefinitionSand creosotebush site
Source
Code Definition
CodeBASN
DefinitionBasin grassland site
Source
Code Definition
CodeIBPE
DefinitionIBP exclosure grassland site
Source
Code Definition
CodeSUMM
DefinitionMt. Summerford grassland site
Source
Code Definition
CodeNORT
DefinitionNorth mesquite site
Source
Code Definition
CodeRABB
DefinitionRabbit mesquite site
Source
Code Definition
CodeWELL
DefinitionWell mesquite site
Source
Code Definition
CodeEAST
DefinitionEast tarbush site
Source
Code Definition
CodeTAYL
DefinitionTaylor tarbush site
Source
Code Definition
CodeWEST
DefinitionWest tarbush site
Source
DefinitionPlot identifier (A,B,C,D)
DefinitionPitfall trap number (1-16)
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code*
Definitionsee Jornada Basin LTER plant species list at http://jornada.nmsu.edu/data-catalogs/species/lter-plants
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeF
Definitionfemale
Source
Code Definition
CodeJ
Definitionjuvenile
Source
Code Definition
CodeM
Definitionmale
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeR
Definitionrecapture
Source
Code Definition
CodeN
Definitionno (new capture)
Source
DefinitionToe mark number NOTE: Toe mark number replaced by tail mark beginning 03/16/1995.
Unitmillimeter
Precision1
Typereal
Unitmillimeter
Precision1
Typereal
Unitgram
Precision.1
Typereal
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeB
Definitionbroken
Source
Code Definition
CodeW
Definitionwhole
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
Definitionno problem
Source
Code Definition
Code1
Definitionsee data history log
Source
Missing Value Code:            
Code.
Explmissing value
Code.
Explmissing value
 
Code.
Explmissing value
Code.
Explmissing value
Code.
Explmissing value
Code.
Explmissing value
 
Accuracy Report:                            
Accuracy Assessment:                            
Coverage:                            
Methods:                            

Non-Categorized Data Resource

Name:lizard code list
Entity Type:document
Physical Structure Description:
Object Name:Lizardcodelist.txt
Size:1416
Externally Defined Format:
Format Name:text/plain
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210007001/41/6b3d96692649b2fc18e739f3e4d94a5f

Data Package Usage Rights

Data Policies

Objectives: The Jornada Basin LTER Information Management System (JIMS) provides protocol and services for data collection, verification, organization, archives, and distribution in accordance with recommendations and guidelines developed by the LTER Information Managers Committee (http://www.lternet.edu/data/netpolicy.html). Disclaimer: While substantial efforts are made to ensure the accuracy of data and documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is". The Jornada Basin LTER shall not be liable for damages resulting from any use or misinterpretation of data sets. Quality Assurance Policy: Data managers interact with researchers during the entire scientific process--from the initial planning of sampling designs and field data collection to archiving and distribution of data. The goal of data management is to build and maintain an archive of Jornada Basin LTER data files that are fully documented, error free, and organized in useful ways. Our protocol for data collection and processing seeks maximum interaction between researchers and data management personnel to avoid confusion and potential loss of data or problems with integrity of data; e.g., identification of historical site treatments that may impact a proposed study or incomplete data set variable descriptions. Site and Data Manager involvement begins during the Project Design phase with the completion of the Jornada Notification of Research form by the researcher prior to the start of work; this alerts both Site and Data Manager to the new study and potential LTER data sets. Upon initiation of a new study, the researcher completes Project Documentation that provides the second level of "metadata" documentation. In the Data Collection phase, the data manager helps researchers design field and laboratory data sheets that facilitate data entry and analysis. Prior to JIMS data entry the investigator completes Data Set Documentation to provide the metadata that fully describe the data set. Both Project and Data set documentation are provided with the data set when it is requested or obtained from our Web site. JIMS data entry programs error-check and verify data as they are entered. Computer files are subjected to further verification by graphing and/or error-checking programs, and/or examination by field investigators. Final quality assurance of the data rests with the investigator who submits data for inclusion in the Data Management System. Direct communication with the Site Manager, or through a collaborating JRN P.I., is used to encourage the timely submission of documentation and of data by researchers. Error-checked data files are stored with associated documentation files on the file server. Archived data files are maintained in ASCII format on 30-yr magneto-optical (MO) disks, portable hard drives, CD-R media, and DVD media to guard against loss of data access that can result from changing technology. This may also include proprietary binary format files to facilitate recovery of working versions. Image data are archived on 8mm tape. Routine tape data backups of the file server are done daily, weekly, and monthly. One set of off-site copies are maintained elsewhere on the NMSU campus of routine backup tapes, MO disks, CD disks, and DVD disks with a second set of MO, CD and DVD disks maintained off-campus in case of a catastrophe on campus. The final responsibility for quality assurance (both in data and documentation content) rests with the principal investigator who submits the data for inclusion in the Jornada Basin LTER Information Management System. To facilitate quality assurance, the data manag ement staff will provide copies of data and documentation submitted by a principal investigator to that investigator upon request. The final responsibility for quality assurance (both in data and documentation content) rests with the principal investigator who submits the data for inclusion in the Jornada Basin LTER Information Management System. To facilitate quality assurance, the data management staff will provide copies of data and documentation submitted by a principal investigator to that investigator upon request. Policy on Submission of data: Data submission into JIMS is expected from LTER researchers, LTER collaborators, and their graduate students where data and information is derived from publicly funded research in the U.S. LTER Network, totally or partially from LTER funds from NSF, Institutional Cost-Share, or Partner Agency or Institution where a formal memorandum of understanding with LTER has been established. Other Jornada Basin researchers are encouraged to submit their documented data for inclusion within JIMS to provide them with an archived backup, ensure its longevity, and provide online access to encourage synthesis efforts. Minimally, for non-LTER associated researchers, we request that publications be provided of research conducted on the Jornada Basin. Initial documentation for a data set must be submitted to the Jornada Basin LTER data manager within 90 days of initiation of data collection. Documentation forms are available at http://jornada-www.nmsu.edu/site/dm/readme.php . These consist of Project Abstract and Data Set and Attribute documentation forms, which include objectives of the study, methods, as well as format and content of the data. All data collected during a calendar year should be submitted to the Jornada Basin LTER data manager prior to July first of the following year. First time data submissions must be submitted with updated standard Jornada Basin LTER forms previously submitted. Data Access Policy: Data will be made publicly available no later than 2 years after submission of the data unless an earlier date is specified by the principal investigator. In the event that an extension of the 2 year period is necessary, the principal investigator may petition the Jornada Basin LTER Executive Committee for a longer protected period. Graduate student research data will be available online after degree completion and they have the opportunity to publish their research. Policies for re-use, distribution, or the production of derivatives: Data re-use, distribution and production of derivative products are governed by the LTER Network data policies (http://www.lternet.edu/data/netpolicy.html) in the spirit of having the potential to increase communication, collaboration and synthesis within and among disciplines. Appropriate citation, acknowledgement, notification and collaboration are outlined and recommended. No commercial redistribution of data and derived products are allowed. Data Acknowledgment Policy: Please send notification to the Information Manager (datamanager@jornada-vmail.nmsu.edu) and Responsible Investigator(s) of the data sets you are downloading and your intended use. Individuals and institutions utilizing data from the Jornada Basin LTER database are requested to place the following acknowledgment in any publication in which these data are mentioned: Data sets were provided by the Jornada Basin Long-Term Ecological Research (LTER) project. Funding for these data was provided by the U.S. National Science Foundation (Grant DEB-0618210). Please send 1 copy of any publication that cites Jornada Basin LTER data to: John P. Anderson Jornada Experimental Range P.O. Box 30003, MSC 3JER New Mexico State University Las Cruces, NM 88003-0003

Keywords

By Thesaurus:
Research NetworksLTAR, LTER
LTER Core AreasPopulations
Jornada Data CategoryAnimal
Jornada Dataset Keywordsanimals, consumers, lizards, pitfall traps, populations
Dataset Statuscompleted

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

--Methods of recording (field data sheets, instrumental, etc.):
field data sheets

Description:

  A grid of 16 pitfall traps was located at each consumer plot. Each trap was 40 cm deep and contained an inner plastic container and funnel. A ceramic tile was placed over each trap. For a 2-week period each sample period, the tiles were raised on one side, and the traps were checked every 3 days in summer and once a week in winter. Individual lizards were taken from the traps, identified, sexed, measured, and weighed. Each lizard was clipped with a unique number using the codes on the diagram on the field data sheets. Toe clipping was done from 1989 to 1995. Starting in March 1995 toe clipping was terminated and lizards were instead marked with a black sharpie marking pen to provide a temporary mark to determine recapture status over a particular 2-week trapping period. A black mark was made posterior to the cloaca on the ventral base of the tail. Trapping grid is a 4x4 with 15 meter interval between trapsw were established in 1995 for LTER-III). Lizard pitfall studies were conducted quarterly over a period of two weeks: in February-March (following winter NPP), in May-June (following spring NPP), in August, and in October-November (following fall NPP). A. LOCATION: Pitfall grids consisted of sixteen stations (four rows of four traps) located at the following ll sites (the old code, no longer used, is given in parentheses following each site*): T-WEST (TBA), T-EAST (TBB), M-RABB-A (MDA), M-NORT (formerly M-RABB-C (MDC), moved to M-NORT in 1995), M-WELL (MDB), G-IBPE-C (GLC), G-SUMM (formerly G-IBPE-A (GLA), moved to G-SUMM in 1995) G-BASN (GLB), C-SAND-B (CBB), C-CALI (CBA), and C-GRAV (CBD). No pitfalls are directly associated with the following NPP sites: P-COLL, P-SMAL, P-TOBO (because of flooding potential), T-TAYL, or G-SUMM.

Quality Control
Quality Control Step 1: 
Description:

Treatment of data
Data was entered from field data sheets using LOTUS 123 spreadsheet add-in, D.A.V.E., which is a data entry and verification program, prior to 03/16/1995. Beginning 03/16/2000, data was entered and validated from field data sheets using a QuickBasic v4.5 data entry program.

People and Organizations

Publishers:
Organization:Jornada Basin LTER
Web Address:
http://jornada.nmsu.edu/lter
Creators:
Individual: David Lightfoot
Contacts:
Individual: Data Manager
Organization:datamanager.jrn.lter@gmail.com

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1989-01-01
End:
2006-12-31
Geographic Region:
Description:Our study site is located in the northern Chihuahuan Desert, approximately 25 km northeast of Las Cruces, New Mexico, USA (+32.6 N, -106.7 W, elevation 1315 m). Annual precipitation is 24 cm and maximum temperatures average 13 C in January and 36 C in June. Our study site includes the 78,000 ha Jornada Experimental Range operated by the USDA Agricultural Research Service (http://jornada.nmsu.edu/), and the 22,000 ha Chihuahuan Desert Rangeland Research Center (CDRRC, http://chihuahuansc.nmsu.edu/) operated by New Mexico State University (http://www.nmsu.edu/).
Bounding Coordinates:
Northern:  32.7494871013Southern:  32.4731725883
Western:  -106.87288312Eastern:  -106.692716261
Altitude (meter):1315

Temporal, Geographic and/or Taxonomic information that applies to Data Table: JornadaStudy_007_npp_lizard_pitfall_trap_data


Time Period
Begin:
1989-06-16
End:
2006-08-18

Project

Maintenance

Maintenance:
Description:

16JUN89 - 23AUG91: 2-week period every month Post-August 1991: 2-week period quarterly (Feb, May, Aug, Oct)

Frequency:
Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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