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Net Primary Production (NPP) Study at Jornada Basin LTER, non-destructive quadrat measurements, 1989-2018

General Information
Data Package:
Local Identifier:knb-lter-jrn.210011002.1
Title:Net Primary Production (NPP) Study at Jornada Basin LTER, non-destructive quadrat measurements, 1989-2018
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package contains non-destructive quadrat measurement data collected for the long-term Net Primary Productivity study at the Jornada Basin LTER. Standing vegetation in quadrats is sampled three times a year: in winter (February - March), before shrubs begin spring growth; in spring (May), when shrubs and spring annuals have reached peak biomass; in fall (late summer; October), when summer annuals have reached peak biomass but before killing frosts. At each sample date, each site is visited (order of sampling may vary, according to phenological stage of sites) and the dimensions of each plant on each quadrat are measured and recorded. Recorded for each observation are: date, zone, plot, quadrat #, species (4 letter acronym), observation # (one for each measurement of that species in that quadrat), cover (percentage of quadrat covered by canopy of that individual or species), height (vertical extent of that individual or species), count (if multiple individuals with the same dimensions are present), and phenological stage (Flowering/fruiting or Vegetative). Attention: These data are not appropriate for estimates of percentage cover. NPP-associated percent cover measurements were developed for and are used solely to provide the best estimate of biomass production. Because the methodology results in measurements of overlapping subcanopy systems and canopies of adjacent individuals, NPP percent cover measurements are not an appropriate measure of actual aerial plant cover. Doing so will result in inflated numbers for the "actual" vegetative cover. This is an ongoing dataset with new quadrat measurements collected in the spring, fall and winter of each year.

Publication Date:2019-08-01

Time Period
Begin:
1989-05-01
End:
2018-09-14

People and Organizations
Contact:Peters, Debra (USDA-ARS Jornada Experimental Range) 
Contact:Manager, Data (Jornada Basin LTER) [  email ]
Creator:Peters, Debra (USDA-ARS Jornada Experimental Range)
Creator:Huenneke, Laura (New Mexico State University)

Data Entities
Data Table Name:
Quadrat measurements
Description:
Quadrat measurements
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210011002/1/d2f0f1d89d559ac2c865501675f42fdd
Name:Quadrat measurements
Description:Quadrat measurements
Number of Records:1102391
Number of Columns:21

Table Structure
Object Name:npp_quadrat_meas_210011002.csv
Size:83145233 bytes
Authentication:631e40533245fd715d8770e573fe3d08 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:fileid  
year  
season  
date  
zone  
site  
quad  
spp  
obs  
cover  
ht  
cnt  
phen  
habit  
form  
cpath  
x  
y  
d  
e  
comment  
Definition:Harvest season id in format NPPR<YY><season> ( where <YY> = 2 digit year and <season> = S (spring) | F (Fall) | W (Winter) )Collection yearHarvest season indicator (W=winter, S=spring, F=fall)Collection dateVegetation zone ( C=Creosotebush; G=Grassland; P=Playa; T=Tarbush; M=Mesquite Dune)NPP site (15)Quadrat number (1-49)Plant species code - To link these codes to recognized taxa, refer to the "JRN Vascular Plants" EDI package (knb-jrn-lter.210520001.1 - https://portal.edirepository.org/nis/mapbrowse?packageid=knb-lter-jrn.210520001.1).Observation numberPercent coverHeight in centimetersNumber of similar size occurrancesPhenological state ( V=Vegetation; F=Flowering)Habit (A=Annual; P=Perennial; B=Biennial)Growth form (FERN=Fern; FORB=Broad-leaved herb; GRASS=Grass or Graminoid; SHRUB=Shrubs; S-SHR=Sub-Shrub; ST-SU=Stem Succulent; LF-SU=Leaf Succulent)Carbon reduction pathway (C3; C4; CM)Quadrat X coordinateQuadrat Y coordinatePlant diameter (USED only in NPPQ89S.DAT / NPPQ89F.DAT)History comment (0 = No history log entry / 1 = See history log)Record comment
Storage Type:string  
date  
string  
date  
string  
string  
float  
string  
float  
float  
float  
float  
string  
string  
string  
string  
float  
float  
float  
float  
string  
Measurement Type:nominaldateTimenominaldateTimenominalnominalrationominalratioratioratiorationominalnominalnominalnominalratioratioratiorationominal
Measurement Values Domain:
DefinitionHarvest season id in format NPPR<YY><season> ( where <YY> = 2 digit year and <season> = S (spring) | F (Fall) | W (Winter) )
FormatYYYY
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeS
DefinitionSpring
Source
Code Definition
CodeF
DefinitionFall
Source
Code Definition
CodeW
DefinitionWinter
Source
FormatYYYY-MM-DD
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC
DefinitionCreosote shrubland
Source
Code Definition
CodeG
DefinitionGrassland
Source
Code Definition
CodeM
DefinitionMesquite dunes
Source
Code Definition
CodeP
DefinitionPlaya
Source
Code Definition
CodeT
DefinitionTarbush
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeCALI
DefinitionCaliche
Source
Code Definition
CodeGRAV
DefinitionGravel
Source
Code Definition
CodeSAND
DefinitionSand
Source
Code Definition
CodeBASN
DefinitionBasin
Source
Code Definition
CodeIBPE
DefinitionIBP Exclosure
Source
Code Definition
CodeSUMM
DefinitionMt. Summerford
Source
Code Definition
CodeNORT
DefinitionNorth Natural Vegetation Exclosure
Source
Code Definition
CodeRABB
DefinitionRabbit Rain Gauge
Source
Code Definition
CodeWELL
DefinitionWest Well
Source
Code Definition
CodeCOLL
DefinitionCollege Ranch
Source
Code Definition
CodeSMAL
DefinitionSmall
Source
Code Definition
CodeTOBO
DefinitionTobosa Tank
Source
Code Definition
CodeEAST
DefinitionEast
Source
Code Definition
CodeTAYL
DefinitionTaylor Well
Source
Code Definition
CodeWEST
DefinitionWest
Source
Unitnumber
Typenatural
Min
Max49 
DefinitionPlant species code - To link these codes to recognized taxa, refer to the "JRN Vascular Plants" EDI package (knb-jrn-lter.210520001.1 - https://portal.edirepository.org/nis/mapbrowse?packageid=knb-lter-jrn.210520001.1).
Unitnumber
Typereal
Min
Max1300 
Unitdimensionless
Typereal
Min
Max117 
Unitcentimeter
Typereal
Min0.1 
Max353 
Unitnumber
Typereal
Min
Max999 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeV
DefinitionVegetative
Source
Code Definition
CodeF
DefinitionFlowering
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeP
DefinitionPerennial
Source
Code Definition
CodeA
DefinitionAnnual
Source
Code Definition
CodeB
DefinitionBiennial
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeSHRUB
DefinitionShrubs
Source
Code Definition
CodeGRASS
DefinitionGrass or Graminoid
Source
Code Definition
CodeFORB
DefinitionBroad-leaved herb
Source
Code Definition
CodeS-SHR
DefinitionSub-Shrub
Source
Code Definition
CodeST-SU
DefinitionStem Succulent
Source
Code Definition
CodeLF-SU
DefinitionLeaf Succulent
Source
Code Definition
CodeUNKN
DefinitionUnknown
Source
Code Definition
CodeVINE
DefinitionVine
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC3
DefinitionC3 photsynthetic pathway
Source
Code Definition
CodeC4
DefinitionC4 photosynthetic pathway
Source
Code Definition
CodeCM
DefinitionCAM photosynthetic pathway
Source
Unitcentimeter
Typereal
Min
Max
Unitcentimeter
Typereal
Min
Max
Unitcentimeter
Typereal
Min
Max90 
Unitnumber
Typereal
Min
Max
DefinitionRecord comment
Missing Value Code:                
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplUnkown or Not observed
CodeNA
ExplUnkown or Not observed
CodeNA
ExplUnkown or Not observed
CodeNA
ExplUnkown or Not observed
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
CodeNA
ExplMissing value
 
Accuracy Report:                                          
Accuracy Assessment:                                          
Coverage:                                          
Methods:                                          

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is". The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularynet primary production, aboveground production, vegetation, deserts
JRN Dataset Keywordscore, Vegetation Dynamics
Jornada Project NamesNPP
Jornada Place NamesNPP locations, C-CALI, C-GRAV, C-SAND, G-BASN, G-SAND, G-SUMM, M-NORT, M-RABB, M-WELL, P-COLL, P-SMAL, P-TOBO, T-EAST, T-TAYL, T-WEST
LTER Core AreaPrimary Production, Populations

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Field sites and design: Grids of permanent 1 square meter quadrats have been established in 15 sites: three sites in each of 5 community types or zones (grama grassland, creosote bush scrub, tarbush flats, mesquite dunes, playa). Grids consist of 49 quadrats arranged in a square 7 x 7 pattern, with quadrats 10 m apart. (Exception: P-COLL, the College Ranch playa, has 48 quadrats arranged in a 3 x 16 pattern.) Quadrats are permanently marked with aluminum nails inserted into the soil at two diagonal corners; quadrats are identified by nearby rebar stakes and tags (numbered 1-49, starting at the northwest corner and wrapping back and forth in a north-south direction). Field sampling: Standing biomass is sampled three times a year: in winter (February - March), before shrubs begin spring growth; in spring (May), when shrubs and spring annuals have reached peak biomass; in fall (late summer; October), when summer annuals have reached peak biomass but before killing frosts. At each sample date, each site is visited (order of sampling may vary, according to phenological stage of sites) and the dimensions of each plant on each quadrat are measured and recorded. Recorded for each observation are: date, zone, plot, quadrat #, species (4 letter acronym), observation # (one for each measurement of that species in that quadrat), cover (percentage of quadrat covered by canopy of that individual or species), height (vertical extent of that individual or species), count (if multiple individuals with the same dimensions are present), and phenological stage (Flowering/fruiting or Vegetative). Plants rooted outside but reaching into the quadrat are measured in terms of their vertical and horizontal extent only in the rectangular volume above the quadrat. Large plants (e.g., shrubs) are broken down into individual branch systems or other sub- volumes and recorded as separate observations. Early sample periods included measurements of diameter, rather than cover, for some species; see data files from those periods. Cacti are measured for number of pads (count), average length of pad (height), and average width of pad (diameter). From these dimensional measurements, volume can be calculated for each species in each quadrat. A regression of biomass against volume is constructed by harvesting plants near but outside of the grid of permanent quadrats. Dominant species, and others showing significant differences among sites in past regressions, are harvested from each site; for other species, samples may be taken in smaller numbers at any one site and samples from different sites pooled in the regression (see species list). Sample sizes are 15 for dominants, 10 for most other species (see species list). Range of cover values to be harvested is based on the range of cover values recorded from the permanent quadrats. Plants to be harvested are located in situations typical of those encountered in the permanent quadrats, and their cover and height values measured as for the quadrats. Volumes are harvested, returned to the laboratory, held in a cold room (4 degree Celsius), sorted (dead material discarded, unless obviously from the current season of growth), dried (55 degree Celsius), and weighed. Dominant shrubs (Larrea, Flourensia, Prosopis) are separated into leaves, stems, and reproductive material (either before or after weighing of total biomass); these components are weighed separately. Tissue samples are selected and ground for nutrient concentrations or for archival. Harvest data are used to build regressions of biomass against volume. Quadrat data are used to estimate plant volume by species by quadrat, and then total biomass on a quadrat; positive increments in biomass over a time interval provide estimates of productivity for that quadrat. See flow chart for summary of analysis. See NPPFIELD.PRO for detailed field sampling protocol.

People and Organizations

Creators:
Individual: Debra Peters
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0002-5842-8099
Individual: Laura Huenneke
Organization:New Mexico State University
Id:https://orcid.org/0000-0002-2562-6822
Contacts:
Individual: Debra Peters
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0002-5842-8099
Individual: Data Manager
Organization:Jornada Basin LTER
Email Address:
datamanager.jrn.lter@gmail.com

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1989-05-01
End:
2018-09-14
Geographic Region:
Description:NPP is measured at 15 sites, spanning 5 vegetation community types in the Jornada Basin. This bounding box includes all 15 sites. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager.
Bounding Coordinates:
Northern:  32.669Southern:  32.488
Western:  -106.865Eastern:  -106.713

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual: Debra Peters
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0002-5842-8099
Role:Principal Investigator
Funding: NSF: DEB-1832194

Maintenance

Maintenance:
Description:This study is ongoing, with new data collected in winter, spring, and fall of each year
Frequency:

Additional Info

Additional Information:
 

5 vegetation communities with 3 sites in each zone: creosotebush scrub: CALI, GRAV, SAND tarbush flats: EAST, TAYL, WEST grassland: BASN, IBPE, SUMM mesquite dunes: NORT, RABB, WELL playa: COLL, SMAL, TOBO See attached site map. C CALI NPP Creosotebush: Caliche site C GRAV NPP Creosotebush: Gravel site C SAND NPP Creosotebush: Sand site G BASN NPP Grassland: Basin site G IBPE NPP Grassland: IBP exclosure site G SUMM NPP Grassland: Summerford Mountain site M NORT NPP Mesquite: North Natural Revegetation Exclosure site M RABB NPP Mesquite: Rabbit Rain Gauge site M WELL NPP Mesquite: West Well site P COLL NPP Playa: College Playa site P SMAL NPP Playa: Small playa site (also known as Vine Mesquite Playa) P TOBO NPP Playa: Tobosa Tank site T EAST NPP Tarbush: East site T TAYL NPP Tarbush: Taylor Well site T WEST NPP Tarbush: West site

Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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