Data Package Metadata   View Summary

Seasonal non-destructive vegetation measurements at 15 net primary production (NPP) study sites at Jornada Basin LTER, 1989-ongoing

General Information
Data Package:
Local Identifier:knb-lter-jrn.210011002.4
Title:Seasonal non-destructive vegetation measurements at 15 net primary production (NPP) study sites at Jornada Basin LTER, 1989-ongoing
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package contains non-destructive quadrat measurements collected for the long-term Net Primary Production (NPP) study at the Jornada Basin LTER. Data here include measurements of horizontal cover and vertical height of plants observed at permanent NPP quadrats at 15 study sites. Sites were selected to represent the 5 major ecosystem types in the Chihuahuan Desert (upland grasslands, playa grasslands, mesquite-dominated shrublands, creosotebush-dominated shrublands, tarbush-dominated shrublands). For each ecosystem type, three sites were selected to represent the range in variability in production and plant diversity; thus the locations are not replicates. At each site, a 1 hectare area was fenced in 1988 and a grid of 1m x 1m replicate quadrats was laid out when sampling began in 1989. Grids consist of 49 quadrats arranged in a square 7 x 7 pattern, with quadrats 10 m apart (P-COLL has 48 quadrats in a 3 x 16 pattern). Standing vegetation in quadrats is sampled three times a year: in winter (February - March), before shrubs begin spring growth; in spring (May), when shrubs and spring annuals have reached peak biomass; in fall (late summer; October), when summer annuals have reached peak biomass but before killing frosts. Additional observations of plant count and phenological stage are also made. This dataset is subsequently used to determine quadrat biomass and net primary production. Details and linked data packages are described in the methods element. This is an ongoing dataset with new quadrat measurements collected in the spring, fall and winter of each year.

Attention:

1) For most species, these data are not appropriate for estimates of percentage cover because of the way the data are collected.

See Note 1 in the methods element for further details.

Publication Date:2022-02-24
Language:English
For more information:
Visit: https://jrn.lternet.edu
Visit: DOI PLACE HOLDER

Time Period
Begin:
1989-05-01
End:
2020-09-16

People and Organizations
Contact:Jornada Basin LTER Information Manager (Jornada Basin LTER) [  email ]
Creator:Peters, Debra C (USDA-ARS Jornada Experimental Range)
Creator:Huenneke, Laura F (New Mexico State University (Now at NAU))
Associate:Anderson, John (Jornada Basin LTER/New Mexico State University, field data collection)

Data Entities
Data Table Name:
Quadrat plant dimension data
Description:
Plant dimensions (cover, height) collected by quadrat, species, site, and season
Other Name:
Field quadrat protocol
Description:
Field protocol for non-destructive quadrat measurements at NPP sites
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210011002/4/263635a849995fc248a035a6e9f0c29a
Name:Quadrat plant dimension data
Description:Plant dimensions (cover, height) collected by quadrat, species, site, and season
Number of Records:1127709
Number of Columns:26

Table Structure
Object Name:JRN011002_npp_quadrat_meas.csv
Size:128180940 byte
Authentication:d0535a935679adbb00641f6b4e571151 Calculated By MD5
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 File IDYearSeasonDateVegetation zoneSiteQuadratSpeciesObservationPercent coverHeight (cm)CountPhenological stateHabit (orig)Form (orig)PS pathway (orig)X coordinateY coordinatePlant diameterComment indicatorCommentUSDA codeSpecies binomialHabit (current)Form (current)PS pathway (current)
Column Name:fileid  
year  
season  
date  
zone  
site  
quad  
spp  
obs  
cover  
ht  
cnt  
phen  
habit_orig  
form_orig  
cpath_orig  
x  
y  
d  
e  
comment  
USDA_code  
Species_binomial  
habit  
form  
cpath  
Definition:Harvest season id in format NPPR<YY><season> ( where <YY> = 2 digit year and <season> = S (spring) | F (Fall) | W (Winter) )Collection yearHarvest season indicator (W=winter, S=spring, F=fall)Collection dateVegetation zone ( C=Creosotebush; G=Grassland; P=Playa; T=Tarbush; M=Mesquite Dune)NPP site (15)Quadrat number (1-49)Plant species code [ JRN LTER plant code. Current, recognized taxonomic codes are in the "USDA_code" column, or refer to the JRN Vascular Plant List EDI package (knb-lter-jrn.210520001) ]Observation numberPercent coverHeight in centimetersNumber of similar size occurrancesPhenological state ( V=Vegetation; F=Flowering)Original data entry habit (A=Annual; P=Perennial; B=Biennial)Original data entry vegetation growth form [FORB, GRASS, SHRUB, S-SHR, ST-SU, LF-SU, VINE]Original data entry photosynthetic pathway [C3, C4, CM (CAM)]Quadrat X coordinateQuadrat Y coordinatePlant diameter (USED only in NPPQ89S.DAT / NPPQ89F.DAT)History comment (0 = No history log entry / 1 = See history log)Record commentTaxonomic code from USDA Plants databaseBinomial name of taxa, if known.Habit (A=Annual; P=Perennial; B=Biennial)Vegetation growth form [FORB, GRASS, SHRUB, S-SHR, ST-SU, LF-SU, VINE]Photosynthetic pathway [C3, C4, CM (CAM)]
Storage Type:string  
date  
string  
date  
string  
string  
integer  
string  
integer  
float  
float  
integer  
string  
string  
string  
string  
float  
float  
float  
boolean  
string  
string  
string  
string  
string  
string  
Measurement Type:nominaldateTimenominaldateTimenominalnominalintervalnominalintervalratioratiointervalnominalnominalnominalnominalratioratioratiointervalnominalnominalnominalnominalnominalnominal
Measurement Values Domain:
Definitionany text
FormatYYYY
Precision1
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeS
DefinitionSpring
Source
Code Definition
CodeF
DefinitionFall
Source
Code Definition
CodeW
DefinitionWinter
Source
FormatYYYY-MM-DD
Precision1
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
DefinitionMesquite dune vegetation type
Source
Code Definition
CodeC
DefinitionCreosote shrubland vegetation type
Source
Code Definition
CodeG
DefinitionGrassland vegetation type
Source
Code Definition
CodeP
DefinitionPlaya vegetation type (grassland)
Source
Code Definition
CodeT
DefinitionTarbush vegetation type
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeCALI
DefinitionCaliche site (creosote shrubland)
Source
Code Definition
CodeGRAV
DefinitionGravel site (creosote shrubland)
Source
Code Definition
CodeSAND
DefinitionSand site (creosote shrubland; formerly UPTR - upper trailer)
Source
Code Definition
CodeBASN
DefinitionBasin site (grassland at lower trailer)
Source
Code Definition
CodeIBPE
DefinitionIBP Exclosure site (grassland)
Source
Code Definition
CodeSUMM
DefinitionMt. Summerford site (grassland)
Source
Code Definition
CodeNORT
DefinitionNorth natural vegetation exclosure site (mesquite)
Source
Code Definition
CodeRABB
DefinitionRabbit rain gauge site (mesquite)
Source
Code Definition
CodeWELL
DefinitionWest well site (mesquite)
Source
Code Definition
CodeCOLL
DefinitionCollege Ranch site (playa)
Source
Code Definition
CodeSMAL
DefinitionSmall site (playa)
Source
Code Definition
CodeTOBO
DefinitionTobosa tank site (playa)
Source
Code Definition
CodeEAST
DefinitionEast of Jornada road tarbush site (tarbush)
Source
Code Definition
CodeTAYL
DefinitionTaylor well site (tarbush)
Source
Code Definition
CodeWEST
DefinitionWest of Jornada road tarbush site (tarbush)
Source
Unitnumber
Typeinteger
Definitionany text
Unitnumber
Typeinteger
Unitdimensionless
Typereal
Unitcentimeter
Typereal
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeV
DefinitionVegetative
Source
Code Definition
CodeF
DefinitionFlowering or reproductive state
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeP
DefinitionPerennial
Source
Code Definition
CodeA
DefinitionAnnual
Source
Code Definition
CodeB
DefinitionBiennial
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeST-SU
DefinitionStem succulent form
Source
Code Definition
CodeSHRUB
DefinitionShrub form
Source
Code Definition
CodeGRASS
DefinitionGrass or graminoid form
Source
Code Definition
CodeFORB
DefinitionForb or broad-leaved herb form
Source
Code Definition
CodeS-SHR
DefinitionSub-shrub form
Source
Code Definition
CodeLF-SU
DefinitionLeaf succulent form
Source
Code Definition
CodeUNKN
DefinitionUnknown form
Source
Code Definition
CodeVINE
DefinitionVine form
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC3
DefinitionC3 photosynthetic pathway
Source
Code Definition
CodeC4
DefinitionC4 photosynthetic pathway
Source
Code Definition
CodeCAM
DefinitionCAM photosynthetic pathway
Source
Unitcentimeter
Typereal
Unitcentimeter
Typereal
Unitcentimeter
Typereal
Unitnumber
Typeinteger
Definitionany text
Definitionany text
Definitionany text
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeP
DefinitionPerennial
Source
Code Definition
CodeA
DefinitionAnnual
Source
Code Definition
CodeB
DefinitionBiennial
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeST-SU
DefinitionStem succulent form
Source
Code Definition
CodeLF-SU
DefinitionLeaf succulent form
Source
Code Definition
CodeGRASS
DefinitionGrass or graminoid form
Source
Code Definition
CodeVINE
DefinitionVine form
Source
Code Definition
CodeUNKN
DefinitionUnknown form
Source
Code Definition
CodeSHRUB
DefinitionShrub form
Source
Code Definition
CodeFORB
DefinitionForb or broad-leaved herb form
Source
Code Definition
CodeS-SHR
DefinitionSub-shrub form
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC3
DefinitionC3 photosynthetic pathway
Source
Code Definition
CodeC4
DefinitionC4 photosynthetic pathway
Source
Code Definition
CodeCAM
DefinitionCAM photosynthetic pathway
Source
Missing Value Code:              
CodeNA
ExplInvalid/unknown code or value
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplNo comment, quality flag, or additional information available
CodeNA
ExplInvalid/unknown code or value
CodeNA
ExplInvalid/unknown code or value
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
Accuracy Report:                                                    
Accuracy Assessment:                                                    
Coverage:                                                    
Methods:                                                    

Non-Categorized Data Resource

Name:Field quadrat protocol
Entity Type:otherEntity
Description:Field protocol for non-destructive quadrat measurements at NPP sites
Physical Structure Description:
Object Name:nppfield_protocol_master_for-distribution.pdf
Size:92032 byte
Authentication:8d3947e36aa893519d4fd369b305b0c9 Calculated By MD5
Externally Defined Format:
Format Name:PDF
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210011002/4/abf64d3ad10e44458910d35f3c3bd182

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Core Research Areaspopulations, primary production
LTER Controlled Vocabulary v1aboveground production, deserts, net primary production, populations, vegetation
nonenet primary production, ongoing
Jornada Basin LTER dataset keywordsongoing
Jornada Basin project namesNPP, study 011
Jornada Basin place namesC-CALI, C-GRAV, C-SAND, G-BASN, G-IBPE, G-SUMM, M-NORT, M-RABB, M-WELL, NPP locations, P-COLL, P-SMAL, P-TOBO, T-EAST, T-TAYL, T-WEST

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

General study design

There are 15 net primary production (NPP) monitoring sites located in 5 vegetation communities that represent the major vegetation types of the Jornada Basin. These vegetation zones and their associated NPP sites (3 per zone) are: 1) creosotebush scrub (CALI, GRAV, SAND), 2) tarbush flats (EAST, TAYL, WEST), 3) grassland (BASN, IBPE, SUMM), 4) mesquite dunes (NORT, RABB, WELL), and 5) playa (COLL, SMAL, TOBO). Grids of permanent 1 square meter replicate quadrats have been established at each site for long-term monitoring of net primary production. Grids consist of 49 quadrats arranged in a square 7 x 7 pattern, with quadrats 10 m apart. (Exception: P-COLL, the College Ranch playa, has 48 quadrats arranged in a 3 x 16 pattern). Quadrats are permanently marked with aluminum nails inserted into the soil at two diagonal corners; quadrats are identified by nearby rebar stakes and tags (numbered 1-49, starting at the northwest corner and wrapping back and forth in a north-south direction). NPP observations, both non-destructive (this package) and off-grid harvests began in April 1989.

Site maps may be available on request from the Data Manager (currently missing).

Non-destructive quadrat measurement methods

This data package contains the non-destructive measurements of vegetation cover, height, and other attributes in permanent NPP quadrats. From these dimensional measurements, volume can be calculated for each species in each quadrat. These volumes can be used with the allometric equations derived from a reference harvest dataset (see EDI package knb-lter-jrn.210011004) to estimate the biomass of permanent quadrat species on a seasonal basis. These methods were first established by Huenneke et al. (2001), were updated by Peters et al. (2012), and are detailed in a protocol attachment (see "Additional files") and outlined below.

Standing biomass is sampled three times a year: in winter (February - March), before shrubs begin spring growth; in spring (May), when shrubs and spring annuals have reached peak biomass; in fall (late summer; October), when summer annuals have reached peak biomass but before killing frosts. At each sample date, each site is visited (order of sampling may vary, according to phenological stage of sites) and the dimensions of each plant on each quadrat are measured and recorded. Recorded for each observation are: date, zone, plot, quadrat #, species (4 letter acronym), observation # (one for each measurement of that species in that quadrat), cover (percentage of quadrat covered by canopy of that individual or species), height (vertical extent of that individual or species), count (if multiple individuals with the same dimensions are present), and phenological stage (Flowering/fruiting or Vegetative). Plants rooted outside but reaching into the quadrat are measured in terms of their vertical and horizontal extent only in the rectangular volume above the quadrat. Large plants (e.g., shrubs) are broken down into individual branch systems or other sub- volumes and recorded as separate observations. Cacti are measured for number of pads (count), average length of pad (height), and average width of pad (diameter).

Early sample periods included measurements of diameter, rather than cover, for some species; see data files from those periods.

IMPORTANT NOTES

NOTE 1: These data are not appropriate for estimates of percentage cover. NPP-associated percent cover measurements were developed for and are used solely to provide the best estimate of biomass production. Because the methodology results in measurements of overlapping subcanopy systems and canopies of adjacent individuals, NPP percent cover measurements are not an appropriate measure of actual aerial plant cover. Doing so will result in inflated numbers for the "actual" vegetative cover.

NOTE 2: Plant species codes in the "spp" column of the data file are specific to the Jornada Basin LTER. However, USDA Plants Database codes (plants.usda.gov) have been assigned to most of these local codes in a separate column. Further details for linking the local codes to currently recognized taxa may be found in the "JRN Vascular Plants" EDI package (knb-lter-jrn.210520001).

Additional files

The field quadrat protocol included with this package (nppfield_protocol_master_for-distribution.pdf) provides details on field methods.

Derived data packages

knb-lter-jrn.210011001 - Quadrat biomass by species and season

knb-lter-jrn.210011003 - Annual NPP summaries by site

References

Huenneke, Laura F., Dennis Clason, and Esteban Muldavin. "Spatial heterogeneity in Chihuahuan Desert vegetation: implications for sampling methods in semi-arid ecosystems." Journal of Arid Environments 47, no. 3 (2001): 257-270.

Peters, Debra PC, Jin Yao, Osvaldo E. Sala, and John P. Anderson. "Directional climate change and potential reversal of desertification in arid and semiarid ecosystems." Global Change Biology 18, no. 1 (2012): 151-163.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Debra C Peters
Organization:USDA-ARS Jornada Experimental Range
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 U.S.A.
Id:https://orcid.org/0000-0002-5842-8099
Individual: Laura F Huenneke
Organization:New Mexico State University (Now at NAU)
Id:https://orcid.org/0000-0002-2562-6822
Contacts:
Organization:Jornada Basin LTER
Position:Jornada Basin LTER Information Manager
Address:
P.O. Box 30003, MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Phone:
575-646-1739
Email Address:
jornada.data@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu/information-management/
Associated Parties:
Individual: John Anderson
Organization:Jornada Basin LTER/New Mexico State University
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 U.S.A.
Email Address:
janderso@jornada.nmsu.edu
Id:https://orcid.org/0000-0002-6417-8022
Role:field data collection
Metadata Providers:
Organization:Jornada Basin LTER
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Web Address:
https://lter.jornada.nmsu.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1989-05-01
End:
2020-09-16
Geographic Region:
Description:NPP study locations: There are 15 sites used in the NPP study, spanning 5 vegetation community types in the Jornada Basin. This bounding box includes all 15 sites. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.669000Southern:  32.488000
Western:  -106.865000Eastern:  -106.713000

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual:Dr. Niall Hanan
Address:
P.O. Box 30003, MSC 3JER,
New Mexico State University,
Las Cruces, NM 88003-8003 United States
Phone:
575-646-3335 (voice)
Email Address:
nhanan@nmsu.edu
Role:Principal Investigator
Abstract:

The Jornada Basin Long-Term Ecological Research (LTER) program is part of a national network of long-term ecological research sites funded by the US National Science Foundation (NSF). The Jornada LTER program has been continuously funded since 1982 to develop general principles governing changes between grassland and shrubland ecosystems based on long-term data collected in the Chihuahuan Desert. We translate our findings to dryland ecosystems around the world, and forecast the dynamics of future ecosystem states in response to changing climate and land use.

Funding:

JRN is funded by the National Science Foundation under award DEB 2025166.

Maintenance

Maintenance:
Description:ongoing
Frequency:annually
Other Metadata

Additional Metadata

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        |     |     |     |  \___attribute 'multiplierToSI' = '0.01'
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EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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