Data Package Metadata   View Summary

Quadrat vegetation cover data from the long-term Small Mammal Exclusion Study (SMES) at Jornada Basin LTER, 1995-2007

General Information
Data Package:
Local Identifier:knb-lter-jrn.210086002.3
Title:Quadrat vegetation cover data from the long-term Small Mammal Exclusion Study (SMES) at Jornada Basin LTER, 1995-2007
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package contains vegetation cover from plots with various levels of herbivore exclusion on the Jornada Experimental Range (JER) and Chihuahuan Desert Rangeland Research Center (CDRRC) in Dona Ana County, southern New Mexico, USA. Study sites were established in 1995; one in black grama grassland and the other in creosotebush shrubland to compare the impact of herbivores on ecosystem processes between these vegetation types. Parallel studies were established at the Sevilleta LTER site (New Mexico, USA) and Mapimi Biosphere Reserve (Durango, Mexico). Each study site is 1 km by 0.5 km in area. Four replicate experimental blocks were randomly located at the grassland study site to measure vegetation responses using exclusion treatments including a) all mammalian herbivores, including cattle, lagomorphs, and rodents, b) lagomorphs and cattle only, c) cattle only, and d) control accessible to all herbivores. Because grazing cattle are excluded from the entire creosote site, only three replicate experimental blocks were randomly located there including a) all mammalian herbivores, including lagomorphs, and rodents, b) lagomorphs only, and c) control accessible to all herbivores. Thirty-six sampling points were positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. At each quadrat, percent cover by individual plant species is measured. Other measurements include height (cm) of each species in the quadrat, and plant condition (living or dead). Data were collected in the spring and fall of every year from 1995 to 2005. After 2005, sampling frequency changed to every 5 years in the fall. This study is ongoing.

Publication Date:2019-09-19

Time Period
Begin:
1995-04-03
End:
2015-10-29

People and Organizations
Contact:Bestelmeyer, Brandon (USDA-ARS Jornada Experimental Range) 
Contact:Manager, Data (Jornada Basin LTER) [  email ]
Creator:Lightfoot, David (Jornada Basin LTER (now at Univ. of NM))
Creator:Bestelmeyer, Brandon (USDA-ARS Jornada Experimental Range)

Data Entities
Data Table Name:
Vegetation cover data (percent) from 1x1 m quadrats at SMES plots
Description:
Vegetation cover data (percent) from 1x1 m quadrats at SMES plots
Other Name:
SMES veg quadrat measurement and data preparation protocol
Description:
SMES veg quadrat measurement and data preparation protocol
Other Name:
SMES quadrat data collection comments and history
Description:
SMES quadrat data collection comments and history
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210086002/3/225f366c8ad6816fefd5011673c74e02
Name:Vegetation cover data (percent) from 1x1 m quadrats at SMES plots
Description:Vegetation cover data (percent) from 1x1 m quadrats at SMES plots
Number of Records:108107
Number of Columns:16

Table Structure
Object Name:JRNStudy_086_smes_quadrat_vegcover_data.csv
Size:8960478 bytes
Authentication:9e43fe67f1483959d3e104655ee17d58 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:year  
date  
season  
site  
block  
plot  
treatment  
quad  
code  
USDA_code  
live_dead  
species_binomial  
cover  
height  
id  
comment_code  
Definition:Year of measurementDate data collectedSeason [S=spring; F=fall]Site location code [C=Creosotebush, G=Grassland]Block number [1-4]Plot number [1-4]Treatment type [C=Control, R=Rodent Exclosure, L=Lagomorph Exclosure, B=Bovine Exclosure]Quad number [1-36]Local plant species code (Jornada LTER)USDA Plants database species code (plants.usda.gov)Live or dead vegetation [L, D]Binomial name [Genus and species - plants.usda.gov]Cover (%) [sum from all 10cm squares]Maximum height (cm) for species in the quadratComment history id codeComment code [0 = no additional information, 1 = see data history log]
Storage Type:date  
date  
string  
string  
string  
string  
string  
float  
string  
string  
string  
string  
float  
float  
string  
string  
Measurement Type:dateTimedateTimenominalnominalnominalnominalnominalrationominalnominalnominalnominalratiorationominalnominal
Measurement Values Domain:
FormatYYYY
Precision
FormatYYYY-MM-DD
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeS
DefinitionSpring
Source
Code Definition
CodeF
DefinitionFall
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC
DefinitionCreosotebush
Source
Code Definition
CodeG
DefinitionGrassland
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionBlock 1
Source
Code Definition
Code2
DefinitionBlock 2
Source
Code Definition
Code3
DefinitionBlock 3
Source
Code Definition
Code4
DefinitionBlock 4
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code3
DefinitionPlot 3
Source
Code Definition
Code2
DefinitionPlot 2
Source
Code Definition
Code4
DefinitionPlot 4
Source
Code Definition
Code1
DefinitionPlot 1
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeR
DefinitionRodent exclosure
Source
Code Definition
CodeC
DefinitionControl
Source
Code Definition
CodeL
DefinitionLagomorph exclosure
Source
Code Definition
CodeB
DefinitionBovine exclosure
Source
Unitnumber
Typenatural
Min
Max36 
DefinitionLocal plant species code (Jornada LTER)
DefinitionUSDA Plants database species code (plants.usda.gov)
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeL
DefinitionLive vegetation
Source
Code Definition
CodeD
DefinitionDead vegetation
Source
DefinitionBinomial name [Genus and species - plants.usda.gov]
Unitdimensionless
Typereal
Min
Max100 
Unitcentimeter
Typereal
Min
Max387 
DefinitionComment history id code
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
DefinitionSee data history log
Source
Code Definition
Code1
DefinitionNo comment
Source
Missing Value Code:                          
CodeNA
ExplDead plant, no height measurement taken
   
Accuracy Report:                                
Accuracy Assessment:                                
Coverage:                                
Methods:                                

Non-Categorized Data Resource

Name:SMES veg quadrat measurement and data preparation protocol
Entity Type:unknown
Description:SMES veg quadrat measurement and data preparation protocol
Physical Structure Description:
Object Name:SMESvegquadprotocol.pdf
Size:86866 bytes
Authentication:c44795a6b927f9c73e93d6f830ac088b Calculated By MD5
Externally Defined Format:
Format Name:unknown
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210086002/3/0e413f639d60c2745efb103c64774370

Non-Categorized Data Resource

Name:SMES quadrat data collection comments and history
Entity Type:unknown
Description:SMES quadrat data collection comments and history
Physical Structure Description:
Object Name:Jornada_086_small_mammal_exclosure_quad_his.txt
Size:742817 bytes
Authentication:1b5953eb06af45c5334641e1fdde58ce Calculated By MD5
Externally Defined Format:
Format Name:unknown
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210086002/3/141a488c15da7b1842301964514f4141

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularyland cover, plant communities, deserts, grasslands, shrubs, plant cover, transects, biodiversity, vegetation dynamics, long term monitoring, species list, plant species, abundance, long term, consumers, herbivory, small mammals, grazing, species diversity
Jornada Project NamesSMES, study 086
Jornada Place NamesSMES
LTER Core AreaLand Use and Land Cover Change, Populations
JRN Dataset KeywordsVegetation Dynamics, Plant-Animal Interactions
(No thesaurus)quadrat

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Each study site is 1 km by 0.5 km in area. Four replicate experimental blocks were randomly located at each study site depending on whether the site was grazed. The blocks are all oriented on a site in an X/Y coordinate system, with the access road to each site forming the X axis. The compass orientation at the Jornada grassland site is to the north, and Jornada creosotebush site is oriented to the south. Treatments within each block include one unfenced control plot (Treatment: C; control); one plot fenced with barbed wire, hardware cloth, and poultry wire to exclude rodents, rabbits, and cattle (Treatment: R; rodent); one plot fenced only with barbed and poultry wire to exclude cattle and rabbits (Treatment: L; lagomorph); and one plot fenced with barbed wire to exclude cattle (Treatment B; bovine). Cattle exclosure plots with barbed wire occur only at the black grama grassland site where cattle were present, for a total of 4 treatment plots at each of the four grassland site blocks. There are only 3 treatment plots at each of the creosotebush site blocks because grazing is excluded from the entire creosotebush site. The treatments were randomly assigned to each of the three or four possible plots in each block independently, and their arrangements differ from block to block. Each of the plots in a replicate block is separated by 20 meters. Each plot measures 36 meters by 36 meters. Thirty-six sampling points are positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. All cover values are measured from a vegetation measurement frame placed over the quadrat, which is 1 meter by 1 meter, and partitioned into a grid of 100, 10 cm by 10 cm squares.

Fraction of canopy cover for each species present was recorded in increments of 0.1, to a maximum of 1.0 for each square in the quadrat frame. Maximum height (cm) was also recorded, by species, for each square. For plants, total canopy cover is measured by summing fractional covers, by species, for all 100 10x10 squares in the quadrat. Total cover values range from 0.1 to 100%. For total cover values less than 5%, increments of 1% were used. For cover values greater than 5%, estimates were made to the nearest 5%. For live plants, the maximum height in centimeters for that plant species in the quadrat is also recorded. For annuals, the highest part of the plant, whether it is a reproductive structure or vegetative structure was used. For perennials, including perennial grasses, the highest vegetative structure and NOT any reproductive structures were used. The height for bare branches is from the ground to the highest point if the bare branch is the highest point for the species. If a plant is dead, but still rooted in the soil, it is stated as "dead" in the condition column. For dead plants cover only (not height) was measured.

From 1995 to 2005, vegetation data for all quadrats was measured twice a year in the spring and fall. After 2005, sampling frequency changed to once every 5 years in the fall. This study is ongoing.

Field observations were recorded on micro-cassette tape recorders. Further details on measurements and data preparation can be found in the SMES vegetation quadrat protocol included with this package ("SMESvegquadprotocol.pdf"). A comment history is found in the file "Jornada_086_small_mammal_exclosure_quad_his.txt".

People and Organizations

Creators:
Individual: David Lightfoot
Organization:Jornada Basin LTER (now at Univ. of NM)
Individual: Brandon Bestelmeyer
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0001-5060-9955
Contacts:
Individual: Brandon Bestelmeyer
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0001-5060-9955
Individual: Data Manager
Organization:Jornada Basin LTER
Email Address:
datamanager.jrn.lter@gmail.com

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1995-04-03
End:
2015-10-29
Geographic Region:
Description:SMES Creosotebush (site=C) site is located in the west bajada area. Contact the data manager for more precise study coordinates.
Bounding Coordinates:
Northern:  32.5427713Southern:  32.46722784
Western:  -106.8514602Eastern:  -106.7294433
Geographic Region:
Description:SMES Grassland (site=G) site is located in the basin floor area. Contact the data manager for more precise study coordinates.
Bounding Coordinates:
Northern:  32.7494871Southern:  32.47317259
Western:  -106.8728831Eastern:  -106.6927163

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual: Brandon Bestelmeyer
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0001-5060-9955
Role:Principal Investigator
Funding: NSF: DEB-1832194

Maintenance

Maintenance:
Description:ongoing. These data were collected yearly from 1995-2005 and every five years thereafter.
Frequency:
Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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