Data Package Metadata   View Summary

Quadrat vegetation cover data from the long-term Small Mammal Exclusion Study (SMES) at Jornada Basin LTER, 1995-2015

General Information
Data Package:
Local Identifier:knb-lter-jrn.210086002.4
Title:Quadrat vegetation cover data from the long-term Small Mammal Exclusion Study (SMES) at Jornada Basin LTER, 1995-2015
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package contains vegetation cover from plots with various levels of herbivore exclusion on the Jornada Experimental Range (JER) and Chihuahuan Desert Rangeland Research Center (CDRRC) in Dona Ana County, southern New Mexico, USA. Study sites were established in 1995; one in black grama grassland and the other in creosotebush shrubland to compare the impact of herbivores on ecosystem processes between these vegetation types. Parallel studies were established at the Sevilleta LTER site (New Mexico, USA) and Mapimi Biosphere Reserve (Durango, Mexico). Each study site is 1 km by 0.5 km in area. Four replicate experimental blocks were randomly located at the grassland study site to measure vegetation responses using exclusion treatments including a) all mammalian herbivores, including cattle, lagomorphs, and rodents, b) lagomorphs and cattle only, c) cattle only, and d) control accessible to all herbivores. Because grazing cattle are excluded from the entire creosote site, only three replicate experimental blocks were randomly located there including a) all mammalian herbivores, including lagomorphs, and rodents, b) lagomorphs only, and c) control accessible to all herbivores. Thirty-six sampling points were positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. At each quadrat, percent cover by individual plant species is measured. Other measurements include height (cm) of each species in the quadrat, and plant condition (living or dead). Data were collected in the spring and fall of every year from 1995 to 2005. After 2005, sampling frequency changed to every 5 years in the fall. This study is ongoing.

Publication Date:2022-04-06
Language:English
For more information:
Visit: https://jrn.lternet.edu
Visit: DOI PLACE HOLDER

Time Period
Begin:
1995-04-03
End:
2020-08-11

People and Organizations
Contact:Jornada Basin LTER Information Manager (Jornada Basin LTER) [  email ]
Creator:Lightfoot, David C (Jornada Basin LTER (now at Univ. of NM))
Creator:Bestelmeyer, Brandon T (USDA-ARS Jornada Experimental Range)

Data Entities
Data Table Name:
Vegetation cover data (percent) from 1x1 m quadrats at SMES plots
Description:
Vegetation cover data (percent) from 1x1 m quadrats at SMES plots
Other Name:
SMES quadrat protocol
Description:
SMES veg quadrat measurement and data preparation protocol
Other Name:
Data collection history file
Description:
SMES quadrat data collection comments and history
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210086002/4/225f366c8ad6816fefd5011673c74e02
Name:Vegetation cover data (percent) from 1x1 m quadrats at SMES plots
Description:Vegetation cover data (percent) from 1x1 m quadrats at SMES plots
Number of Records:109963
Number of Columns:16

Table Structure
Object Name:JRN086002_smes_quadrat_vegcover_data.csv
Size:9517358 byte
Authentication:da45d387b877f252d8489b93a8dcd9ba Calculated By MD5
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 YearDate collectedSeasonSiteBlockPlotTreatmentQuad numberLTER plant codeUSDA Plants codeLive/Dead statusSpecies binomial namePercent coverHeightHistory file IDComments
Column Name:year  
date  
season  
site  
block  
plot  
treatment  
quad  
LTER_code  
USDA_code  
live_dead  
Species_binomial  
cover  
height  
id  
comments  
Definition:Year of measurementDate data collectedSeason [S=spring; F=fall]Site location code [C=Creosotebush, G=Grassland]Block number [1-4]Plot number [1-4]Treatment type [C=Control, R=Rodent Exclosure, L=Lagomorph Exclosure, B=Bovine Exclosure]Quad number [1-36]Local plant species code (Jornada LTER)USDA Plants database species code (plants.usda.gov)Live or dead vegetation [L, D]Binomial name [Genus and species - plants.usda.gov]Cover (%) [sum from all 10cm squares]Maximum height (cm) for species in the quadratComment history id codeComments on observation. In history file prior to 2012, then entered in this column
Storage Type:date  
date  
string  
string  
integer  
integer  
string  
integer  
string  
string  
string  
string  
float  
float  
string  
string  
Measurement Type:dateTimedateTimenominalnominalnominalnominalnominalintervalnominalnominalnominalnominalratiorationominalnominal
Measurement Values Domain:
FormatYYYY
Precision1
FormatYYYY-MM-DD
Precision1
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeS
DefinitionSpring
Source
Code Definition
CodeF
DefinitionFall
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeG
DefinitionSMES Grassland site
Source
Code Definition
CodeC
DefinitionSMES Creosote site
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionBlock 1
Source
Code Definition
Code2
DefinitionBlock 2
Source
Code Definition
Code3
DefinitionBlock 3
Source
Code Definition
Code4
DefinitionBlock 4
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code3
DefinitionPlot 3
Source
Code Definition
Code2
DefinitionPlot 2
Source
Code Definition
Code4
DefinitionPlot 4
Source
Code Definition
Code1
DefinitionPlot 1
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeR
DefinitionRodent exclosure
Source
Code Definition
CodeC
DefinitionControl - no mammal exclosure
Source
Code Definition
CodeL
DefinitionLagomorph exclosure
Source
Code Definition
CodeB
DefinitionBovine exclosure
Source
Unitnumber
Typeinteger
Definitionany text
Definitionany text
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codedead
DefinitionOrganism(s) dead at time of observation
Source
Code Definition
Codelive
DefinitionOrganism(s) alive at time of observation
Source
Definitionany text
Unitdimensionless
Typereal
Unitcentimeter
Typereal
Definitionany text
Definitionany text
Missing Value Code:                  
CodeNA
ExplMissing value - data not collected or otherwise unavailable
   
CodeNA
ExplDead plant, no height measurement taken
CodeNA
ExplDead plant, no height measurement taken
 
CodeNA
ExplNo comment, quality flag, or additional information available
Accuracy Report:                                
Accuracy Assessment:                                
Coverage:                                
Methods:                                

Non-Categorized Data Resource

Name:SMES quadrat protocol
Entity Type:otherEntity
Description:SMES veg quadrat measurement and data preparation protocol
Physical Structure Description:
Object Name:SMESvegquadprotocol.pdf
Size:86866 byte
Authentication:c44795a6b927f9c73e93d6f830ac088b Calculated By MD5
Externally Defined Format:
Format Name:PDF
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210086002/4/2e364eeb6e3bcd83e6cd3ab0ae774be5

Non-Categorized Data Resource

Name:Data collection history file
Entity Type:otherEntity
Description:SMES quadrat data collection comments and history
Physical Structure Description:
Object Name:JRN086_small_mammal_exclosure_quad_his.txt
Size:742817 byte
Authentication:1b5953eb06af45c5334641e1fdde58ce Calculated By MD5
Externally Defined Format:
Format Name:text/plain
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210086002/4/e526791dff89dead9af01a8331f9f054

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Core Research Areasland use and land cover change, populations
LTER Controlled Vocabulary v1abundance, biodiversity, consumers, deserts, grasslands, herbivory, land cover, long term, long term monitoring, plant communities, plant cover, plant species, populations, shrubs, small mammals, species diversity, species list, transects, vegetation dynamics
noneongoing, quadrat
Jornada Basin LTER dataset keywordsPlant-Animal Interactions, Vegetation Dynamics, ongoing
Jornada Basin project namesSMES, study 086
Jornada Basin place namesSMES
USDA National Ag Library's Agricultural Thesaurusgrazing

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Each study site is 1 km by 0.5 km in area. Four replicate experimental blocks were randomly located at each study site depending on whether the site was grazed. The blocks are all oriented on a site in an X/Y coordinate system, with the access road to each site forming the X axis. The compass orientation at the Jornada grassland site is to the north, and Jornada creosotebush site is oriented to the south. Treatments within each block include one unfenced control plot (Treatment: C; control); one plot fenced with barbed wire, hardware cloth, and poultry wire to exclude rodents, rabbits, and cattle (Treatment: R; rodent); one plot fenced only with barbed and poultry wire to exclude cattle and rabbits (Treatment: L; lagomorph); and one plot fenced with barbed wire to exclude cattle (Treatment B; bovine). Cattle exclosure plots with barbed wire occur only at the black grama grassland site where cattle were present, for a total of 4 treatment plots at each of the four grassland site blocks. There are only 3 treatment plots at each of the creosotebush site blocks because grazing is excluded from the entire creosotebush site. The treatments were randomly assigned to each of the three or four possible plots in each block independently, and their arrangements differ from block to block. Each of the plots in a replicate block is separated by 20 meters. Each plot measures 36 meters by 36 meters. Thirty-six sampling points are positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. All cover values are measured from a vegetation measurement frame placed over the quadrat, which is 1 meter by 1 meter, and partitioned into a grid of 100, 10 cm by 10 cm squares.

Fraction of canopy cover for each species present was recorded in increments of 0.1, to a maximum of 1.0 for each square in the quadrat frame. Maximum height (cm) was also recorded, by species, for each square. For plants, total canopy cover is measured by summing fractional covers, by species, for all 100 10x10 squares in the quadrat. Total cover values range from 0.1 to 100%. For total cover values less than 5%, increments of 1% were used. For cover values greater than 5%, estimates were made to the nearest 5%. For live plants, the maximum height in centimeters for that plant species in the quadrat is also recorded. For annuals, the highest part of the plant, whether it is a reproductive structure or vegetative structure was used. For perennials, including perennial grasses, the highest vegetative structure and NOT any reproductive structures were used. The height for bare branches is from the ground to the highest point if the bare branch is the highest point for the species. If a plant is dead, but still rooted in the soil, it is stated as "dead" in the condition column. For dead plants cover only (not height) was measured.

From 1995 to 2005, vegetation data for all quadrats was measured twice a year in the spring and fall. After 2005, sampling frequency changed to once every 5 years in the fall. This study is ongoing.

Field observations were recorded on micro-cassette tape recorders. Further details on measurements and data preparation can be found in the SMES vegetation quadrat protocol included with this package ("SMESvegquadprotocol.pdf"). A comment history is found in the file "Jornada_086_small_mammal_exclosure_quad_his.txt".

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Id:https://ror.org/0330j0z60
Creators:
Individual: David C Lightfoot
Organization:Jornada Basin LTER (now at Univ. of NM)
Email Address:
dlightfo@unm.edu
Individual: Brandon T Bestelmeyer
Organization:USDA-ARS Jornada Experimental Range
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 U.S.A.
Id:https://orcid.org/0000-0001-5060-9955
Contacts:
Organization:Jornada Basin LTER
Position:Jornada Basin LTER Information Manager
Address:
P.O. Box 30003, MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Phone:
575-646-1739
Email Address:
jornada.data@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu/information-management/
Metadata Providers:
Organization:Jornada Basin LTER
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Web Address:
https://lter.jornada.nmsu.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1995-04-03
End:
2020-08-11
Geographic Region:
Description:Western Bajada: Study occurred in the western bajada geomorphic zone in the Jornada Basin. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.542771Southern:  32.467228
Western:  -106.851460Eastern:  -106.729443
Geographic Region:
Description:Basin Floor: Study occurred in the basin floor geomorphic zone in the Jornada Basin. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.749487Southern:  32.473173
Western:  -106.872883Eastern:  -106.692716

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual:Dr. Niall Hanan
Address:
P.O. Box 30003, MSC 3JER,
New Mexico State University,
Las Cruces, NM 88003-8003 United States
Phone:
575-646-3335 (voice)
Email Address:
nhanan@nmsu.edu
Role:Principal Investigator
Abstract:

The Jornada Basin Long-Term Ecological Research (LTER) program is part of a national network of long-term ecological research sites funded by the US National Science Foundation (NSF). The Jornada LTER program has been continuously funded since 1982 to develop general principles governing changes between grassland and shrubland ecosystems based on long-term data collected in the Chihuahuan Desert. We translate our findings to dryland ecosystems around the world, and forecast the dynamics of future ecosystem states in response to changing climate and land use.

Funding:

JRN LTER is funded by the National Science Foundation under award DEB 2025166.

Maintenance

Maintenance:
Description:ongoing - These data were collected yearly from 1995-2005 and every five years thereafter
Frequency:asNeeded
Other Metadata

Additional Metadata

additionalMetadata
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        |     |___element 'unitList'
        |     |     |___text '\n        '
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        |     |     |     |  \___attribute 'abbreviation' = 'cm'
        |     |     |     |  \___attribute 'id' = 'centimeter'
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