Data Package Metadata   View Summary

Leaf litter cover data on 1m x 1m plots from the long-term Small Mammal Exclusion Study (SMES) at Jornada Basin LTER, 1995-2020

General Information
Data Package:
Local Identifier:knb-lter-jrn.210086004.6
Title:Leaf litter cover data on 1m x 1m plots from the long-term Small Mammal Exclusion Study (SMES) at Jornada Basin LTER, 1995-2020
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package contains leaf litter cover data from plots with various levels of herbivore exclusion on the Jornada Experimental Range. Study sites were established in 1995; one in black grama grassland and the other in creosotebush shrubland to compare the impact of herbivores on ecosystem processes between these vegetation types. Parallel studies were established at the Sevilleta LTER site (New Mexico, USA) and Mapimi Biosphere Reserve (Durango, Mexico). Each study site is 1 km by 0.5 km in area. Four replicate experimental blocks were randomly located at the grassland study site to measure vegetation responses using exclusion treatments including a) all mammalian herbivores, including cattle, lagomorphs, and rodents, b) lagomorphs and cattle only, c) cattle only, and d) control accessible to all herbivores. Because grazing cattle are excluded from the entire creosote site, only three replicate experimental blocks were randomly located there including a) all mammalian herbivores, including lagomorphs, and rodents, b) lagomorphs only, and c) control accessible to all herbivores. Thirty-six sampling points were positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. Each year in spring and fall from 1995-2005, the total percent cover of leaf litter in each quadrat was estimated by summing the percent of each 10 cm square within a quadrat (including 100 10-cm squares) containing leaf litter (See methods for a detailed explanation). After 2005, sampling frequency changed to every 5 years. This study is ongoing.

Publication Date:2022-04-07
Language:English
For more information:
Visit: https://jrn.lternet.edu
Visit: DOI PLACE HOLDER

Time Period
Begin:
1995-04-03
End:
2020-08-12

People and Organizations
Contact:Jornada Basin LTER Information Manager (Jornada Basin LTER) [  email ]
Creator:Lightfoot, David C (Jornada Basin LTER (now at Univ. of NM))
Creator:Bestelmeyer, Brandon T (USDA-ARS Jornada Experimental Range)

Data Entities
Data Table Name:
Leaf litter cover observations
Description:
SMES leaf litter cover on 1x1 m quadrats 1995-2015
Other Name:
SMES quadrat protocol
Description:
SMES veg quadrat measurement and data preparation protocol
Other Name:
Data collection history file
Description:
SMES quadrat data collection comments and history
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210086004/6/d9b1af5832d1add5ed08339812a8d478
Name:Leaf litter cover observations
Description:SMES leaf litter cover on 1x1 m quadrats 1995-2015
Number of Records:22786
Number of Columns:12

Table Structure
Object Name:JRN086004_smes_leaf_litter.csv
Size:1138808 byte
Authentication:816183b8eaa266dce5b2fd61079f3be7 Calculated By MD5
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 YearSeasonDate collectedSiteBlockPlotTreatmentQuad numberPercent coverCommentsHistory file IDData type
Column Name:year  
season  
date  
site  
block  
plot  
treatment  
quad  
cover  
comments  
id  
type  
Definition:Year of measurementSeason of data collectionDate data collectedSite or location code - there are 2 SMES sitesBlock numberPlot numberTreatment typeQuad number [1-36]The percent cover of leaf litter (%)Comments on observation. In history file prior to 2012, then entered in this columnComment history id code. A Book or Tape number where comments are loggedQuadrat data type (CR=cryptogamic crust; LL=leaf litter; PC=plant cover; RF=rabbit feces; SD=soil disturbance; TC=termite casing)
Storage Type:date  
string  
date  
string  
integer  
integer  
string  
integer  
float  
string  
string  
string  
Measurement Type:dateTimenominaldateTimenominalnominalnominalnominalintervalrationominalnominalnominal
Measurement Values Domain:
FormatYYYY
Precision1
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeS
DefinitionSpring
Source
Code Definition
CodeF
DefinitionFall
Source
FormatYYYY-MM-DD
Precision1
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeG
DefinitionSMES Grassland site
Source
Code Definition
CodeC
DefinitionSMES Creosote site
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionBlock 1
Source
Code Definition
Code2
DefinitionBlock 2
Source
Code Definition
Code3
DefinitionBlock 3
Source
Code Definition
Code4
DefinitionBlock 4
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code3
DefinitionPlot 3
Source
Code Definition
Code2
DefinitionPlot 2
Source
Code Definition
Code4
DefinitionPlot 4
Source
Code Definition
Code1
DefinitionPlot 1
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeB
DefinitionBovine exclosure
Source
Code Definition
CodeC
DefinitionControl - no mammal exclosure
Source
Code Definition
CodeR
DefinitionRodent exclosure
Source
Code Definition
CodeL
DefinitionLagomorph exclosure
Source
Unitnumber
Typeinteger
Unitdimensionless
Typereal
Definitionany text
Definitionany text
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeLL
DefinitionLeaf litter quadrat cover
Source
Missing Value Code:                
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplNo comment, quality flag, or additional information available
   
Accuracy Report:                        
Accuracy Assessment:                        
Coverage:                        
Methods:                        

Non-Categorized Data Resource

Name:SMES quadrat protocol
Entity Type:otherEntity
Description:SMES veg quadrat measurement and data preparation protocol
Physical Structure Description:
Object Name:SMESvegquadprotocol.pdf
Size:86866 byte
Authentication:c44795a6b927f9c73e93d6f830ac088b Calculated By MD5
Externally Defined Format:
Format Name:PDF
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210086004/6/2e364eeb6e3bcd83e6cd3ab0ae774be5

Non-Categorized Data Resource

Name:Data collection history file
Entity Type:otherEntity
Description:SMES quadrat data collection comments and history
Physical Structure Description:
Object Name:JRN086_small_mammal_exclosure_quad_his.txt
Size:742817 byte
Authentication:1b5953eb06af45c5334641e1fdde58ce Calculated By MD5
Externally Defined Format:
Format Name:text/plain
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210086004/6/e526791dff89dead9af01a8331f9f054

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Core Research AreasLand Use and Land Cover Change
LTER Controlled Vocabulary v1consumers, deserts, grasslands, herbivory, land cover, leaf litter, litterfall, long term, long term monitoring, shrubs, small mammals, vegetation
Jornada Basin LTER dataset keywordsPlant-Animal Interactions, Vegetation Dynamics
Jornada Basin project namesSMES, study 086
Jornada Basin place namesSMES
USDA National Ag Library's Agricultural Thesaurusgrazing

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Each study site is 1 km by 0.5 km in area. Four replicate experimental blocks were randomly located at each study site depending on whether the site was grazed. The blocks are all oriented on a site in an X/Y coordinate system, with the access road to each site forming the X axis. The compass orientation at the Jornada grassland site is to the north, and Jornada creosotebush site is oriented to the south. Treatments within each block include one unfenced control plot (Treatment: C; control); one plot fenced with barbed wire, hardware cloth, and poultry wire to exclude rodents, rabbits, and cattle (Treatment: R; rodent); one plot fenced only with barbed and poultry wire to exclude cattle and rabbits (Treatment: L; lagomorph); and one plot fenced with barbed wire to exclude cattle (Treatment B; bovine). Cattle exclosure plots with barbed wire occur only at the black grama grassland site where cattle were present, for a total of 4 treatment plots at each of the four grassland site blocks. There are only 3 treatment plots at each of the creosotebush site blocks because grazing is excluded from the entire creosotebush site. The treatments were randomly assigned to each of the three or four possible plots in each block independently, and their arrangements differ from block to block. Each of the plots in a replicate block is separated by 20 meters. Each plot measures 36 meters by 36 meters. Thirty-six sampling points are positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. All cover values here are measured from a vegetation measurement frame placed at this quadrat, which is 1 meter by 1 meter, and partitioned into a grid of 100, 10 cm by 10 cm squares.

Leaf litter includes all detached (unrooted) dead plant material on the soil surface, including woody branches. Each year in spring and fall from 1995-2005, leaf litter percent cover was determined by summing the estimated cover for each of the 100, 10 cm squares. For total cover values less than 5%, increments of 1% were used. For cover values greater than 5%, estimates were made to the nearest 5%. Only leaf litter cover that is in the open and not within clumps of grass, etc. Some leaf litter cover has distinctive margins and is easy to define and measure. However, much leaf litter consists of many diffuse small patches that are separated by bare soil, and distributed throughout the quadrat. For such diffuse cover, we determined the actual cover in one typical 10 by 10 cm square (e.g., 0.3), then counted the number of squares with diffuse cover (e.g., 5), and multiplied the number of squares by the actual cover for a typical square (e.g., 0.3 X 5 = 1.5, then rounded to 1.0 or 2.0, or if the value had been greater than 5, rounded to the nearest increment of 5.0 ) for the total litter cover. All litter cover is pooled into one observation, and no height is measured.

From 1995 to 2005, vegetation data for all quadrats was measured twice a year in the spring and fall. After 2005, sampling frequency changed to once every 5 years in the fall. This study is ongoing.

Field observations were recorded on micro-cassette tape recorders. Further details on measurements and data preparation can be found in the SMES vegetation quadrat protocol included with this package ("SMESvegquadprotocol.pdf"). A comment history is found in the file "JRN086_small_mammal_exclosure_quad_his.txt".

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Id:https://ror.org/0330j0z60
Creators:
Individual: David C Lightfoot
Organization:Jornada Basin LTER (now at Univ. of NM)
Email Address:
dlightfo@unm.edu
Individual: Brandon T Bestelmeyer
Organization:USDA-ARS Jornada Experimental Range
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 U.S.A.
Id:https://orcid.org/0000-0001-5060-9955
Contacts:
Organization:Jornada Basin LTER
Position:Jornada Basin LTER Information Manager
Address:
P.O. Box 30003, MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Phone:
575-646-1739
Email Address:
jornada.data@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu/information-management/
Metadata Providers:
Organization:Jornada Basin LTER
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Web Address:
https://lter.jornada.nmsu.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1995-04-03
End:
2020-08-12
Geographic Region:
Description:Western Bajada: Study occurred in the western bajada geomorphic zone in the Jornada Basin. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.542771Southern:  32.467228
Western:  -106.851460Eastern:  -106.729443
Geographic Region:
Description:Basin Floor: Study occurred in the basin floor geomorphic zone in the Jornada Basin. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.749487Southern:  32.473173
Western:  -106.872883Eastern:  -106.692716

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual:Dr. Niall Hanan
Address:
P.O. Box 30003, MSC 3JER,
New Mexico State University,
Las Cruces, NM 88003-8003 United States
Phone:
575-646-3335 (voice)
Email Address:
nhanan@nmsu.edu
Role:Principal Investigator
Abstract:

The Jornada Basin Long-Term Ecological Research (LTER) program is part of a national network of long-term ecological research sites funded by the US National Science Foundation (NSF). The Jornada LTER program has been continuously funded since 1982 to develop general principles governing changes between grassland and shrubland ecosystems based on long-term data collected in the Chihuahuan Desert. We translate our findings to dryland ecosystems around the world, and forecast the dynamics of future ecosystem states in response to changing climate and land use.

Funding:

JRN LTER is funded by the National Science Foundation under award DEB 2025166.

Maintenance

Maintenance:
Description:ongoing - New data are added every 5 years
Frequency:asNeeded
Other Metadata

Additional Metadata

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