Data Package Metadata   View Summary

Plant community responses to removal of functional groups and species along vegetation transects at the Jornada Basin LTER site, 1997-2002

General Information
Data Package:
Local Identifier:knb-lter-jrn.210121001.61
Title:Plant community responses to removal of functional groups and species along vegetation transects at the Jornada Basin LTER site, 1997-2002
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package contains vegetative cover data of plots that have had various plant functional groups or species experimentally removed at the Jornada Basin LTER site in southern New Mexico, USA. This data was collected in an effort to distinguish the differential effects of plant community biomass, plant community functional groups, and biodiversity within functional groups on plant community function. To make these distinctions, treatments were established by the selective removal of plant species or functional groups within experimental plots. There are eight treatments: control (C, no removals); four functional group removal treatments (PG, perennial grass removed; S, shrubs removed; SSh, subshrubs removed; Succ, succulents removed), and three species richness manipulation treatments. Richness manipulations included a simplified treatment (Simp), where only the single most abundant species of each growth form is preserved and all other species in the growth form are removed, a reduced‐Larrea treatment (rL), where the Larrea is assumed to be the dominant and is removed while minority components remain, and a reduced-Prosopsis treatment (rP), where Prosopis rather than Larrea is removed as the shrub dominant. Following treatments, vegetative data was collected by sampling each plot along three transects twice a year (Spring and Fall) for 5 years from 1997-2002 (no data collected in 1998). This data set consists of the date of collection, plot number, treatment type, transect number, quadrat number, species codes, two diameters, height, condition, count, record IDs, and error codes. This study is complete.

Publication Date:2021-12-14
Language:English
For more information:
Visit: https://jrn.lternet.edu
Visit: DOI PLACE HOLDER

Time Period
Begin:
1997-05-19
End:
2004-05-17

People and Organizations
Contact:Jornada Basin LTER Information Manager (Jornada Basin LTER) [  email ]
Creator:Huenneke, Laura F (New Mexico State University (Now at NAU))
Creator:Peters, Debra C (USDA-ARS Jornada Experimental Range)
Associate:Anderson, John (Jornada Basin LTER/New Mexico State University, associate)

Data Entities
Data Table Name:
Biodiversity vegetation transect data
Description:
1997-2002 vegetation cover of plots after removal of various plant functional groups and species at the Jornada Basin
Other Name:
JRN DSD file (Dataset Documentation)
Description:
Early format Jornada metadata file for this dataset.
Other Name:
JRN HIS file archive
Description:
A zip archive containing annual history files with notes taken during data collection for this datset. Error codes indicated in the data may be found here.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210121001/61/ca473c9b796b0e866280bb67282a41ad
Name:Biodiversity vegetation transect data
Description:1997-2002 vegetation cover of plots after removal of various plant functional groups and species at the Jornada Basin
Number of Records:302816
Number of Columns:17

Table Structure
Object Name:JRN121001_biodiversity_transect_data.csv
Size:23839268 byte
Authentication:1c4442d9484fb29cd722c9c3fd551a1b Calculated By MD5
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 DatePlotTreatmentTransectQuadratJRN species codeUSDA Plants database codeBinomial nameHabitFormDiameter 1Diameter 2HeightConditionCountError codeComment
Column Name:date  
plot  
treatment  
transect  
quad  
spp_old  
USDA_code  
Species_binomial  
habit  
form  
diam1  
diam2  
height  
condition  
count  
ec  
comment  
Definition:DatePlot number [1-100, 48 plots total]Treatment [C = control, S= shrub removal, PG = perennial grass removal, SSh = subshrub removal, Succ = succulent removal, Simp = simplified, rL = reduced minus Larrea, rP = reduced minus Prosopis]Transect number, west to east [1-3]Quadrat number [1-15, recorded as 15-1 (north-south)]Species code [4 or 5 alpha numeric accronym. To link these codes to recognized taxa, please refer to the "Vascular Plant Species of the Jornada Basin" Package. https://portal.edirepository.org/nis/mapbrowse?packageid=knb-lter-jrn.210520001.1]USDA Plants database code (plants.usda.gov)Binomial name (Genus species) if availableGrowth habit (perennial, annual, etc)Growth form (forb, shrub, etc)Maximum diameter [cm]Maximum diameter perpendicular to first diameter [cm]Vertical height [cm]Condition [live or dead]Number of similar size occurenceserror code [0 = none, 1 = see history log entry]Comments
Storage Type:date  
integer  
string  
integer  
integer  
string  
string  
string  
string  
string  
float  
float  
float  
string  
integer  
boolean  
string  
Measurement Type:dateTimeintervalnominalintervalintervalnominalnominalnominalnominalnominalratioratiorationominalintervalnominalnominal
Measurement Values Domain:
FormatYYYY-MM-DD
Precision1
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC
DefinitionControl
Source
Code Definition
CodePG
DefinitionPerennial grass removal
Source
Code Definition
CoderL
DefinitionReduced minus Larrea
Source
Code Definition
CoderP
DefinitionReduced minus Prosopis
Source
Code Definition
CodeS
DefinitionShrub removal
Source
Code Definition
CodeSimp
DefinitionSimplified
Source
Code Definition
CodeSSh
DefinitionSubshrub removal
Source
Code Definition
CodeSucc
DefinitionSucculent removal
Source
Unitnumber
Typeinteger
Unitnumber
Typeinteger
Definitionany text
Definitionany text
Definitionany text
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeA
DefinitionAnnual
Source
Code Definition
CodeB
DefinitionBiennial
Source
Code Definition
CodeP
DefinitionPerennial
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeFORB
DefinitionForb or broad-leaved herb form
Source
Code Definition
CodeGRASS
DefinitionGrass or graminoid form
Source
Code Definition
CodeLF-SU
DefinitionLeaf succulent form
Source
Code Definition
CodeSHRUB
DefinitionShrub form
Source
Code Definition
CodeST-SU
DefinitionStem succulent form
Source
Code Definition
CodeS-SHR
DefinitionSub-shrub form
Source
Code Definition
CodeVINE
DefinitionVine form
Source
Unitcentimeter
Typereal
Unitcentimeter
Typereal
Unitcentimeter
Typereal
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codelive
DefinitionOrganism(s) alive at time of observation
Source
Code Definition
Codedead
DefinitionOrganism(s) dead at time of observation
Source
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
DefinitionFalse
Source
Code Definition
Code1
DefinitionTrue
Source
Definitionany text
Missing Value Code:                
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplNo comment, quality flag, or additional information available
Accuracy Report:                                  
Accuracy Assessment:                                  
Coverage:                                  
Methods:                                  

Non-Categorized Data Resource

Name:JRN DSD file (Dataset Documentation)
Entity Type:otherEntity
Description:Early format Jornada metadata file for this dataset.
Physical Structure Description:
Object Name:bdvegtrn.dsd.txt
Size:24108 byte
Authentication:8662e2af1b71d5e7c976dc5d1e194c6d Calculated By MD5
Externally Defined Format:
Format Name:text/plain
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210121001/61/392ffff125b26f947b8cfc5727b5b805

Non-Categorized Data Resource

Name:JRN HIS file archive
Entity Type:otherEntity
Description:A zip archive containing annual history files with notes taken during data collection for this datset. Error codes indicated in the data may be found here.
Physical Structure Description:
Object Name:bdvt00f.his.zip
Size:105856 byte
Authentication:37052611cfbf69c2c52b4a22509bf6be Calculated By MD5
Externally Defined Format:
Format Name:application/zip
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210121001/61/fef1ee52487716113b69b2a6d3c92ac2

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Core Research Areaspopulations
LTER Controlled Vocabulary v1biodiversity, community dynamics, plant communities, plant cover, plant ecology, plant functional types, plant growth, plant species, populations, transects, vascular plants
noneongoing
Jornada Basin LTER dataset keywordsLTER III, Vegetation Dynamics, long-term, ongoing
Jornada Basin project namesBiodiversity, study 121
Jornada Basin place namesBiodiversity, CDRRC, JER

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Overview and study location

This study was conducted from 1997-2002 as part of the Jornada Basin LTER program. The objective of this study was to distinguish the differential effects of plant community biomass, plant community functional groups, and biodiversity within functional groups to a number of plant community responses. To make these distinctions, treatments were established by the selective removal of plant species or of all species of a functional group within a plot.

Given the long lifespans and difficulty of establishment of desert perennials, establishment of desired communities from seed or transplant was impractical. Instead, we established our stands of varying plant diversity by making appropriate removals of species or species groups from replicate plots of a diverse Chihuahuan scrub site. Treatments were established in summer/fall 1995. Plants were removed by simple cutting at the soil surface (no soil disturbance or herbicide). For most species, this was effective; recruits of perennial grasses were removed from the appropriate plots twice per year, and regrowing shrubs were clipped back as needed. After 2 years only one perennial grass and two shrubs required substantial effort for plot maintenance.

The experimental area is a 250 m x 250 m area located on the NMSU Chihuahuan Desert Rangeland Research Center, immediately northeast of the intersection of the Summerford powerline road and the road running along the southern boundary of the Jornada Experimental Range and the CDRRC. The area was gridded into 25 m x 25 m plots; because of some existing environmental gradients (the area slopes to the east, and mesquite abundance varies from north to south) blocks were established and treatments were randomly assigned to plots within blocks. Plot boundaries are marked with rebar in the corners and simple steel wire stretched along boundaries; plots are identified by number and treatment on aluminum tags and on plastic rebar caps in the southwest corner.

Treatments and sampling design

There are eight treatments: a control (C, no removals); four functional group removal treatments (PG, perennial grass removed; S, shrubs removed; SSh, subshrubs removed; Succ, succulents removed), and three treatments where richness within a functional group was manipulated. The latter include the simplified treatment (Simp, where only the single most abundant species of each growth form remains, while all other species of those growth forms are removed), the reduced‐Larrea treatment (rL, where the dominant of each growth form is removed, and minority components remain), and a second form of the reduced treatment (rP, where Prosopis rather than Larrea is removed as the shrub dominant). Treatments were established in summer/fall 1995. Plants were removed by cutting at the soil surface (no soil disturbance or herbicide application). All vegetation removed during treatment application was field weighed and dry weighed for the purposes of this study, but is not included within this dataset.

Each treatment was replicated in 6 plots, with 48 total plots. Within each plot, three 1 m x 15 m transects (total area 45 m2) crossed each 15 m x 15 m central area in the plots: one at the western-most edge of each area, one 5 m to the east, and the third 10 m to the east of the western boundary. The vegetation transects were measured once or twice a year to assess the response of the plant community to the manipulations of species and functional diversity. Measurements occured every fall at a minimum. When resources permit and vegetation seems to deserve it, spring sampling was also be carried out (2 x per year).

Detailed transect methods and data

The transects were sampled by the use of meter sticks to frame individual quadrats (numbered 1-15 within each transect; the transects are numbered 1 to 3, from west to east in each plot). Sampling took place twice a year (Spring and Fall) for 5 years from 1997-2002 (no data was collected in 1998). All plants rooted within the quadrat (or with more than half of the stem or basal area rooted within) were measured for maximum diameter, maximum perpendicular diameter, and height (all to nearest cm). The entire plant canopy was measured, not just that portion falling within the quadrat. Plants rooted outside the quadrat, whose canopies may overlap the quadrat, were not measured. Multiple individuals of the same dimensions in a single quadrat were given a "count" (if no count recorded, count = 1). Dead plants are identified as species (where possible) and recorded as "condition = dead." High densities of fluffgrass in fall 1997 forced alterations to sampling, such that DAPU was measured only in odd-numbered quadrats for most of the transects. The following applies to readings of DAPU (fluffgrass): In Spring 97 all quads read for DAPU). Beginning with Fall 97 only odd numbered quads measured for DAPU. In Spring and Fall 99 DAPU and all forbs were read in only odd numbered quads. In Spring and Fall 2000 DAPU was read in odd numbered quads (forbs were read in all quads). In Spring 2001 DAPU and all forbs were read in odd numbered quads. In Fall 2001, all vegetation in every quad was read. In Spring 2002 all vegetation in all quads was read.

This data set consists of the date of collection, plot number, treatment type, transect number, quadrat number, species codes, two diameters, height, condition, count, record IDs, and error codes. Data collection was completed in 2002.

Additional Files

An additional metadata file - bdvegtrn.dsd.txt - from the earlier Jornada information management system is included and may contain useful metadata. If there are errors noted in the "ec" column of the data file, these may be described in the history files for the project, which are collected in an additional attached archive (bdvt00f.his.zip).

REFERENCES

Buonopane, Michelle, Laura Foster Huenneke, and Marta Remmenga. "Community response to removals of plant functional groups and species from a Chihuahuan Desert shrubland." Oikos 110.1 (2005): 67-80.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Laura F Huenneke
Organization:New Mexico State University (Now at NAU)
Id:https://orcid.org/0000-0002-2562-6822
Individual: Debra C Peters
Organization:USDA-ARS Jornada Experimental Range
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 U.S.A.
Id:https://orcid.org/0000-0002-5842-8099
Contacts:
Organization:Jornada Basin LTER
Position:Jornada Basin LTER Information Manager
Address:
P.O. Box 30003, MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Phone:
575-646-1739
Email Address:
jornada.data@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu/information-management/
Associated Parties:
Individual: John Anderson
Organization:Jornada Basin LTER/New Mexico State University
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 U.S.A.
Email Address:
janderso@jornada.nmsu.edu
Id:https://orcid.org/0000-0002-6417-8022
Role:associate
Metadata Providers:
Organization:Jornada Basin LTER
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Web Address:
https://lter.jornada.nmsu.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1997-05-19
End:
2004-05-17
Geographic Region:
Description:Basin Floor: Study occurred in the basin floor geomorphic zone in the Jornada Basin. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.749487Southern:  32.473173
Western:  -106.872883Eastern:  -106.692716

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual:Dr. William Schlesinger
Address:
Earth and Ocean Sciences,
Duke University, A150 LSRC,
Durham, NC 27708 United States
Phone:
575-646-1739 (voice)
Email Address:
jornada.lter@nmsu.edu
Role:Principal Investigator
Abstract:

The Jornada Basin Long-Term Ecological Research (LTER) program is part of a national network of long-term ecological research sites funded by the US National Science Foundation (NSF). The Jornada LTER program has been continuously funded since 1982 to develop general principles governing changes between grassland and shrubland ecosystems based on long-term data collected in the Chihuahuan Desert. We translate our findings to dryland ecosystems around the world, and forecast the dynamics of future ecosystem states in response to changing climate and land use.

Funding:

At the time of this study, JRN LTER was funded by the National Science Foundation under award DEB 9411971.

Maintenance

Maintenance:
Description:completed
Frequency:notPlanned
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'cm'
        |     |     |     |  \___attribute 'id' = 'centimeter'
        |     |     |     |  \___attribute 'multiplierToSI' = '0.01'
        |     |     |     |  \___attribute 'name' = 'centimeter'
        |     |     |     |  \___attribute 'parentSI' = 'meter'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text '.01 meters'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'number'
        |     |     |     |  \___attribute 'name' = 'number'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'a quantity or amount'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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