Data Package Metadata   View Summary

Plant species-level responses to functional group and species removals in biodiversity experiment plots at the Jornada Basin LTER site, 1999

General Information
Data Package:
Local Identifier:knb-lter-jrn.210121004.1
Title:Plant species-level responses to functional group and species removals in biodiversity experiment plots at the Jornada Basin LTER site, 1999
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This dataset contains individual species size data in vegetation plots that have had various plant functional groups or species experimentally removed at the Jornada Basin LTER site in southern New Mexico, USA. This data was collected with the objective to distinguish the differential effects of plant community biomass, functional groups, and biodiversity within functional groups on ecosystem and plant community function. To make these distinctions, treatments were established by the selective removal of plant species or functional groups within experimental plots. There are eight treatments: control (C, no removals); four functional group removal treatments (PG, perennial grass removed; S, shrubs removed; SSh, subshrubs removed; Succ, succulents removed), and three species richness manipulation treatments. Richness manipulations included a simplified treatment (Simp), where only the single most abundant species of each growth form is preserved and all other species in the growth form are removed, a reduced‐Larrea treatment (rL), where the Larrea is assumed to be the dominant and is removed while minority components remain, and a reduced-Prosopsis treatment (rP), where Prosopis rather than Larrea is removed as the shrub dominant. In 1999, this pilot study attempted to assess individual species responses of representative individuals in these treatments. Ten randomly selected individuals of eight plant species were measured in each experimental plot, and this dataset reports volumetric data (diameters and height) for each. The study was designed as an individual-based complement to the transect data in EDI dataset knb-lter-jrn.210121001 but was not continued past 1999. This dataset is complete.

Short Name:biodiv_plant_response_99
Publication Date:2023-09-07
Language:English
For more information:
Visit: https://jrn.lternet.edu
Visit: DOI PLACE HOLDER

Time Period
Begin:
1999-07-13
End:
1999-08-10

People and Organizations
Contact:Information Manager (Jornada Basin LTER Program) [  email ]
Creator:Anderson, John (New Mexico State University, Jornada Basin LTER, Jornada Research Site Manager)
Creator:Peters, Debra C (USDA-ARS Jornada Experimental Range)
Creator:Huenneke, Laura F (Northern Arizona University)
Creator:Buonopane, Michelle (New Mexico State University, senior research assistant)
Creator:Zeisset, Michelle (New Mexico State University, MS student)
Creator:Miller, Heather (New Mexico State University, PhD student)
Creator:Mandujo, Maria del Carmen (New Mexico State University, postdoc)
Creator:Rucker, Amber (New Mexico State University, REU student)
Creator:Bogner, Heidi (New Mexico State University)
Creator:Herrick, Jeff E (USDA-ARS Jornada Experimental Range)

Data Entities
Data Table Name:
Biodiversity 1999 plant response table
Description:
Biodiversity plant response data, including plant dimensions and condition, collected from plots in summer 1999
Other Name:
JRN DSD file (Dataset Documentation)
Description:
Early format Jornada metadata file for this dataset.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210121004/1/f05f687c924e6228a45aa56e21fb737e
Name:Biodiversity 1999 plant response table
Description:Biodiversity plant response data, including plant dimensions and condition, collected from plots in summer 1999
Number of Records:2473
Number of Columns:7

Table Structure
Object Name:jrn121004_biodiv_plant_response_1999.csv
Size:78015 byte
Authentication:ef3df8a45b7540ecbff849f7b111e5cc Calculated By MD5
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 datePlotTreatmentSpecies IDDiameter 1Diameter 2Height
Column Name:date  
plot  
treatment  
spp_id  
diam1  
diam2  
height  
Definition:Date data collectedPlot numberVegetation biodiversity treatment code [C = control, S= shrub removal, PG = perennial grass removal, SSh = subshrub removal, Succ = succulent removal, Simp = simplified, rL = reduced minus Larrea, rP = reduced minus Prosopis]Species ID code (4 letter LTER code)Plant maximum diameter in centimetersPlant maximum diameter perpendicular to first diameter in centimetersVertical height in centimeters
Storage Type:dateTime  
integer  
string  
string  
integer  
integer  
integer  
Measurement Type:dateTimeintervalnominalnominalratioratioratio
Measurement Values Domain:
FormatMM/DD/YYYY
Precision1
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeSucc
DefinitionSucculent removal - all leaf and stem succulents removed (Yucca, Opuntia, etc.)
Source
Code Definition
CodeS
DefinitionShrub removal - all shrubs removed (Larrea, Prosopis, Ephedra, etc.)
Source
Code Definition
CodeSSh
DefinitionSubshrub removal - all subshrubs removed (Zinnia, Xanthocephalum, etc.)
Source
Code Definition
CodeC
DefinitionControl - All species of all growth forms remain
Source
Code Definition
CodePG
DefinitionPerennial grass removal - all perennial grasses removed (Muhlenbergia, Dasychloa, Setaria, etc.)
Source
Code Definition
CoderL
DefinitionReduced minus Larrea - Dominant of each growth form removed, only subordinates remain; Larrea removed as dominant shrub.
Source
Code Definition
CodeSimp
DefinitionSimplified - Only a single species (the dominant) of each growth form remaining, all subordinate species removed; plot contains only LATR, ZIAC, MUPO, and YUBA as woody or grass perennials.
Source
Code Definition
CoderP
DefinitionReduced minus Prosopis - Dominant of each growth form removed, only subordinates remain; Prosopis removed as dominant shrub
Source
Definition4 letter LTER species code
Unitcentimeter
Typewhole
Unitcentimeter
Typewhole
Unitcentimeter
Typewhole
Missing Value Code:        
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
Accuracy Report:              
Accuracy Assessment:              
Coverage:              
Methods:              

Non-Categorized Data Resource

Name:JRN DSD file (Dataset Documentation)
Entity Type:otherEntity
Description:Early format Jornada metadata file for this dataset.
Physical Structure Description:
Object Name:bdpltres.dsd.txt
Size:12596 byte
Authentication:7e603bb924ab48da48883cc9a1639b08 Calculated By MD5
Externally Defined Format:
Format Name:text/plain
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210121004/1/392ffff125b26f947b8cfc5727b5b805

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Core Research Areaspopulations
LTER Controlled Vocabulary v1biodiversity, plant biomass, plant communities, plant cover, plant ecology, plant functional types, plant species, transects
nonelong-term experiment, vegetation removal
Jornada Basin LTER dataset keywordsLTER III, completed
Jornada Basin project namesBiodiversity, study 121
Jornada Basin place namesBiodiversity, CDRRC, JER

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Overview and study location

This biodiversity study was conducted from 1997-2002 as part of the Jornada Basin LTER program. The objective of this study was to distinguish the differential effects of plant community biomass, plant community functional groups, and biodiversity within functional groups to a number of plant community responses. To make these distinctions, treatments were established by the selective removal of plant species or of all species of a functional group within a plot.

Given the long lifespans and difficulty of establishment of desert perennials, establishment of desired communities from seed or transplant was impractical. Instead, we established our stands of varying plant diversity by making appropriate removals of species or species groups from replicate plots of a diverse Chihuahuan scrub site. Treatments were established in summer/fall 1995. Plants were removed by simple cutting at the soil surface (no soil disturbance or herbicide). For most species, this was effective; recruits of perennial grasses were removed from the appropriate plots twice per year, and regrowing shrubs were clipped back as needed. After 2 years only one perennial grass and two shrubs required substantial effort for plot maintenance.

The experimental area is a 250 m x 250 m area located on the NMSU Chihuahuan Desert Rangeland Research Center, immediately northeast of the intersection of the Summerford powerline road and the road running along the southern boundary of the Jornada Experimental Range and the CDRRC. The area was gridded into 25 m x 25 m plots; because of some existing environmental gradients (the area slopes to the east, and mesquite abundance varies from north to south) 6 blocks were established and treatments were randomly assigned to plots within blocks. Plot boundaries are marked with rebar in the corners and simple steel wire stretched along boundaries; plots are identified by number and treatment on aluminum tags and on plastic rebar caps in the southwest corner.

Treatments and sampling design

There are eight treatments: a control (C, no removals); four functional group removal treatments (PG, perennial grass removed; S, shrubs removed; SSh, subshrubs removed; Succ, succulents removed), and three treatments where richness within a functional group was manipulated. The latter include the simplified treatment (Simp, where only the single most abundant species of each growth form remains, while all other species of those growth forms are removed), the reduced‐Larrea treatment (rL, where the dominant of each growth form is removed, and minority components remain), and a second form of the reduced treatment (rP, where Prosopis rather than Larrea is removed as the shrub dominant).

Treatments were established in summer/fall 1995 by randomly assigning all 8 treatments to plots within each of 6 blocks in the experimental area (blocking to allow for spatial heterogeneity in environment and vegetation). There are therefore 6 replicates of each of the 8 treatments in 48 total plots. In removal treatments plants were removed by cutting at the soil surface (no soil disturbance or herbicide application). All vegetation removed during treatment application (Fall 1995) was field weighed and dry weighed for the study and these data, and detailed vegetation removal methods, are available in EDI dataset knb-lter-jrn.210121003.

This study was designed as a complement data from plant cover measurements taken along vegetation transects that are found in EDI dataset knb-lter-jrn.210121001. It is a pilot program to examine the feasibility of measuring individuals from selected species to determine their response to removal of competing vegetation.

Individual sampling methods and data

Ten randomly selected individuals of eight plant species were measured in each plot. The species of interest were the two most dominant species in each of four classes: shrubs (Larrea tridentata and Flourensia cernua), sub-shrubs (Xanthocephalum microcephalum and Zinnia acerosa), succulents (Yucca baccata and Opuntia violacea), and perennial grasses (Muhlenberiga Porteri and Dasyochloa pulchella). All forty-eight experimental plots were surveyed; the plots were divided into six blocks of eight plots each. Each section contained a control plot and seven plots that had received a specific removal treatment as described above.

For all but one species, the plants to be measured were selected from a random number table after first performing a rough count to determine the number of individuals in the plot. To select a plant for measurement, a field crew member would hold the numbers to be sampled while another member of the team counted off the plants while walking around the plot. When a plant to be measured was called the counting paused for the individual plant to be measured.

Dasyochloa pulchella was extremely abundant in most plots. For this species the plot was subdivided into 25 5-meter square subplots. The subplot to be sampled was then selected from the random number table and the individual plant within th eplot was chosen by one member of the team turning their back to the subplot and flipping a coin over their shoulder while the other member of the team watched to see where the coin fell, the nearest plant was then measured.

Three measurements were taken on each selected plant: first the longest diameter of the canopy, followed by the longest perpendicular diameter of the canopy, and the height from the highest part of the canopy to the ground immediately below. These three variables are recorded in the data table for this dataset (diam1, diam2, height). If no species are present it is indicated by "0" in the two diameter and height fields. If less than 10 individuals were present in the plot then only the measured individuals are shown in the data table.

Additional Files

An additional metadata file - bdpltres.dsd.txt - from the earlier Jornada information management system is included and may contain useful metadata.

REFERENCES

For more information on the study (not necessarily these data) see the article:

Buonopane, Michelle, Laura Foster Huenneke, and Marta Remmenga. "Community response to removals of plant functional groups and species from a Chihuahuan Desert shrubland." Oikos 110.1 (2005): 67-80.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: John Anderson
Organization:New Mexico State University, Jornada Basin LTER
Position:Jornada Research Site Manager
Email Address:
janderso@jornada.nmsu.edu
Id:https://orcid.org/0000-0002-6417-8022
Individual: Debra C Peters
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0002-5842-8099
Individual: Laura F Huenneke
Organization:Northern Arizona University
Id:https://orcid.org/0000-0002-2562-6822
Individual: Michelle Buonopane
Organization:New Mexico State University
Position:senior research assistant
Individual: Michelle Zeisset
Organization:New Mexico State University
Position:MS student
Individual: Heather Miller
Organization:New Mexico State University
Position:PhD student
Individual: Maria del Carmen Mandujo
Organization:New Mexico State University
Position:postdoc
Individual: Amber Rucker
Organization:New Mexico State University
Position:REU student
Individual: Heidi Bogner
Organization:New Mexico State University
Individual: Jeff E Herrick
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0001-5434-8481
Contacts:
Organization:Jornada Basin LTER Program
Position:Information Manager
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 U.S.A.
Phone:
575-322-2430
Email Address:
jornada.data@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu/information-management/
Metadata Providers:
Organization:Jornada Basin LTER Program
Position:Jornada Basin LTER program
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Email Address:
jornada.lter@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu
Id:https://ror.org/05976ta47

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1999-07-13
End:
1999-08-10
Geographic Region:
Description:Basin Floor: Study occurred in the basin floor geomorphic zone in the Jornada Basin. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.749487Southern:  32.473173
Western:  -106.872883Eastern:  -106.692716

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual:Dr. Niall Hanan
Address:
P.O. Box 30003, MSC 3JER,
New Mexico State University,
Las Cruces, NM 88003-8003 United States
Phone:
575-646-3335 (voice)
Email Address:
nhanan@nmsu.edu
Role:Principal Investigator
Abstract:

Dryland ecosystems occupy nearly half of the Earth's land surface and provide goods and services for more than 1 billion people. The goal of the Jornada Basin Long Term Ecological Research (LTER) program is to understand what factors determine the structure and function of drylands, and to develop general principles governing changes between grassland and shrubland ecosystems. This research is based on long-term data collected in the Chihuahuan Desert. We translate our findings to dryland ecosystems around the world, and forecast the dynamics of future ecosystem states in response to changing climate and land use.

Funding:

The Jornada LTER program has been continuously funded by the U.S. National Science Foundation since 1982 (Current NSF award: DEB-2025166)

Additional Award Information:
Funder:National Science Foundation
Funder ID:https://ror.org/021nxhr62
Number:DEB 2025166
Title:LTER: Long –Term Research at the Jornada Basin (LTER VII)
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=2025166
Additional Award Information:
Funder:National Science Foundation
Number:DEB 1832194
Title:Prior award: LTER: Long - Term Research at the Jornada Basin (LTER VII)
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=1832194
Additional Award Information:
Funder:National Science Foundation
Number:DEB 1235828
Title:Prior award: LTER: Long-Term Research at the Jornada Basin (LTER-VI)
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=1235828
Additional Award Information:
Funder:National Science Foundation
Number:DEB 0618210
Title:Prior award: Jornada Basin LTER V: Landscape Linkages in Arid and Semiarid Ecosystems
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=0618210
Additional Award Information:
Funder:National Science Foundation
Number:DEB 0080412
Title:Prior award: LTER IV: Jornada Basin: Linkages in Semi-arid Landscapes
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=0080412
Additional Award Information:
Funder:National Science Foundation
Number:DEB 9411971
Title:Prior award: LTER: The Chihuahuan Desert (The Jornada LTER III Consortium)
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=9411971
Additional Award Information:
Funder:National Science Foundation
Number:DEB 8811160, 9240261
Title:Prior award: Interactions in Time and Space Variability in a Chihuahuan Desert Ecosystem: Jornada LTER (II)
Additional Award Information:
Funder:National Science Foundation
Number:DEB 8114466, 8612106
Title:Prior award: Interactions of Time and Space Variability in a Chihuahuan Desert Ecosystem in New Mexico (Jornada LTER I)

Maintenance

Maintenance:
Description:ongoing
Frequency:asNeeded
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'cm'
        |     |     |     |  \___attribute 'id' = 'centimeter'
        |     |     |     |  \___attribute 'multiplierToSI' = '0.01'
        |     |     |     |  \___attribute 'name' = 'centimeter'
        |     |     |     |  \___attribute 'parentSI' = 'meter'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text '.01 meters'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'number'
        |     |     |     |  \___attribute 'name' = 'number'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'a quantity or amount'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

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