Data Package Metadata   View Summary

The effects of changing vegetative composition on the abundance, species diversity and activity of birds at the Jornada Basin LTER site, 1997

General Information
Data Package:
Local Identifier:knb-lter-jrn.210121006.80
Title:The effects of changing vegetative composition on the abundance, species diversity and activity of birds at the Jornada Basin LTER site, 1997
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package contains bird abundance data collected in plots that have had various plant functional groups or species experimentally removed at the Jornada Basin LTER site in southern New Mexico, USA. This data was collected in an effort to distinguish the differential effects of plant community biomass, plant community functional groups, and biodiversity within functional groups on plant community function, including effects on animals. To make these distinctions, treatments were established by the selective removal of plant species or functional groups within experimental plots. There are eight treatments: control (C, no removals); four functional group removal treatments (PG, perennial grass removed; S, shrubs removed; SSh, subshrubs removed; Succ, succulents removed), and three species richness manipulation treatments. Richness manipulations included a simplified treatment (Simp), where only the single most abundant species of each growth form is preserved and all other species in the growth form are removed, a reduced‐Larrea treatment (rL), where the Larrea is assumed to be the dominant and is removed while minority components remain, and a reduced-Prosopsis treatment (rP), where Prosopis rather than Larrea is removed as the shrub dominant. Following treatments, bird abundance and habitat preference data was collected in 1997. This data set consists of plot number, treatment type, and time of bird presence by taxa and by habitat and behavior. This study is complete.

Publication Date:2021-12-14
Language:English
For more information:
Visit: https://jrn.lternet.edu
Visit: DOI PLACE HOLDER

Time Period
Begin:
1997-07-01
End:
1997-09-21

People and Organizations
Contact:Jornada Basin LTER Information Manager (Jornada Basin LTER) [  email ]
Creator:Huenneke, Laura F (New Mexico State University (Now at NAU))
Associate:Anderson, John (Jornada Basin LTER/New Mexico State University, associate)

Data Entities
Data Table Name:
Biodiversity bird abundance survey data
Description:
Bird abundance and behavioral data collected in biodiversity plots in 1997
Data Table Name:
Biodiversity bird codes
Description:
Code definitions for the spp_list column in the abundance data file.
Other Name:
JRN DSD file (Dataset Documentation)
Description:
Early format Jornada metadata file for this dataset.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210121006/80/752623fe82b7d7c0f0ad6b329d3c181d
Name:Biodiversity bird abundance survey data
Description:Bird abundance and behavioral data collected in biodiversity plots in 1997
Number of Records:48
Number of Columns:11

Table Structure
Object Name:JRN121006_biodiversity_bird_abundance.csv
Size:1680 byte
Authentication:7b5e7491bb9843fe0047e7e85c9b56c2 Calculated By MD5
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 BlockPlotTreatmentIndividual countPlot time groupPlot time memberNumber of speciesNumber ground foragingNumber vegetation foragingNumber perchingSpecies list
Column Name:block  
plot  
treatment  
indv_count  
time1  
time2  
spp_count  
fg_count  
fv_count  
p_count  
spp_list  
Definition:Block number at biodiversity [1-6]Plot number [1-100, 48 plots total]Treatment [C = control, S= shrub removal, PG = perennial grass removal, SSh = subshrub removal, Succ = succulent removal, Simp = simplified, rL = reduced minus Larrea, rP = reduced minus Prosopis]Total number of birds seen in plotTotal time in plot by family groupTotal time in plot by family memberNumber of bird species seen in plotNumber of birds foraging on ground in plotNumber of birds foraging in vegetation in plotNumber of birds perching in plotList of bird species observed in plot
Storage Type:integer  
integer  
string  
integer  
integer  
integer  
integer  
integer  
integer  
integer  
string  
Measurement Type:intervalintervalnominalintervalintervalintervalintervalintervalintervalintervalnominal
Measurement Values Domain:
Unitnumber
Typeinteger
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC
DefinitionControl
Source
Code Definition
CodePG
DefinitionPerennial grass removal
Source
Code Definition
CoderL
DefinitionReduced minus Larrea
Source
Code Definition
CoderP
DefinitionReduced minus Prosopis
Source
Code Definition
CodeS
DefinitionShrub removal
Source
Code Definition
CodeSimp
DefinitionSimplified
Source
Code Definition
CodeSSh
DefinitionSubshrub removal
Source
Code Definition
CodeSucc
DefinitionSucculent removal
Source
Unitnumber
Typeinteger
Unitsecond
Typeinteger
Unitsecond
Typeinteger
Unitnumber
Typeinteger
Unitnumber
Typeinteger
Unitnumber
Typeinteger
Unitnumber
Typeinteger
Definitionany text
Missing Value Code:                    
CodeNA
ExplMissing value - data not collected or otherwise unavailable
Accuracy Report:                      
Accuracy Assessment:                      
Coverage:                      
Methods:                      

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210121006/80/938a5c88e2c2975b66fba1507fc2575b
Name:Biodiversity bird codes
Description:Code definitions for the spp_list column in the abundance data file.
Number of Records:15
Number of Columns:2

Table Structure
Object Name:JRN121006_biodiversity_bird_codes.csv
Size:367 byte
Authentication:20298691abac17f8e4f18b975efc05bd Calculated By MD5
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 CodeCode definition
Column Name:code  
code_definition  
Definition:Code used in spp_list column of data fileDefinition of code (common name of bird or group)
Storage Type:string  
string  
Measurement Type:nominalnominal
Measurement Values Domain:
Definitionany text
Definitionany text
Missing Value Code:    
Accuracy Report:    
Accuracy Assessment:    
Coverage:    
Methods:    

Non-Categorized Data Resource

Name:JRN DSD file (Dataset Documentation)
Entity Type:otherEntity
Description:Early format Jornada metadata file for this dataset.
Physical Structure Description:
Object Name:bdbrdsur.dsd.txt
Size:17555 byte
Authentication:9896c1288be0da483aff42bc062b4ab3 Calculated By MD5
Externally Defined Format:
Format Name:text/plain
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210121006/80/392ffff125b26f947b8cfc5727b5b805

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Core Research AreasPopulations
LTER Controlled Vocabulary v1LTER, abundance, birds, deserts, habitat selection, species abundance
noneAnimal, LTER, behavior, breeding birds, desert birds, perching, singing
Jornada Basin LTER dataset keywordsAnimal, LTER III
Jornada Basin project namesBiodiversity, study 121
Jornada Basin place namesBiodiversity, CDRRC, JER

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Overview and study location

This study was conducted in 1997 as part of the Jornada Basin LTER program. The primary objective of this study was to distinguish the differential effects of plant community biomass, plant community functional groups, and biodiversity within functional groups to a number of plant community responses. To make these distinctions, treatments were established by the selective removal of plant species or of all species of a functional group within a plot. In addition to plant responses, animal community responses were also observed

The experimental area is a 250 m x 250 m area located on the NMSU Chihuahuan Desert Rangeland Research Center, immediately northeast of the intersection of the Summerford powerline road and the road running along the southern boundary of the Jornada Experimental Range and the CDRRC. The experiment took place from June through August 1997. The site contained 6 blocks, each containing 8 treatments. The treatments consisted of plots of land (25m x25m) which had been altered by removing plant types in a systematic fashion. Species were removed based on plant functional group and species dominance within the community.

Treatments and bird observations

There are eight treatments: a control (C, no removals); four functional group removal treatments (PG, perennial grass removed; S, shrubs removed; SSh, subshrubs removed; Succ, succulents removed), and three treatments where richness within a functional group was manipulated. The latter include the simplified treatment (Simp, where only the single most abundant species of each growth form remains, while all other species of those growth forms are removed), the reduced‐Larrea treatment (rL, where the dominant of each growth form is removed, and minority components remain), and a second form of the reduced treatment (rP, where Prosopis rather than Larrea is removed as the shrub dominant). Treatments were established in summer/fall 1995. Plants were removed by cutting at the soil surface (no soil disturbance or herbicide application). 

Birds were observed in each plot for periods of 35 minutes with a 10 minute acclimation period prior to the start of the observation period. The acclimation period was meant to allow time for birds to settle and to orient the observer. Observations started at sunrise and ended between and 8:30 and 9:00 am. In all cases, observer movement was coordinated so as not to disturb other observers.

Four observers participated each day, each observing a total of four plots. They watched (using binoculars) their assigned plot from a step ladder at the corner of the plot in order to get a better view of the entire plot. Also, in order to help the observers distinguish between adjacent plots, markers were placed around the perimeter of the plots. These markers were put in place the day before and then promptly taken down so that ecosystem function was not disrupted. An attempt was made to choose and place the markers so as not to frighten or attract the birds in any way. The following data were recorded in each plot: species type, time spent in plot, type of vegetation utilized, presence of a pair or family group, and behavior. Behaviors recorded included perching, singing, calling, foraging on the ground, foraging in the vegetation, nesting , and preening. Birds that simply flew over the plot or that landed on the plot boundaries were not counted.

There were four replications over the course of ten weeks. The replications were done according to a predetermined schedule which was developed in such a manner so as to reduce sampling error as much as possible. In order to do this, the following were avoided: replications of the same plot at the same time of day, replicating all of the 6 similar treatments on the same day, and having the same observer do more than one of the replications of a single plot.

Variable descriptions

The column "spp_list" in the data file contains codes for bird species or groups. The additional file "JRN121006_biodiversity_bird_codes.csv" contains the definition of these codes as common names or group names of the species.

Time1 is the total time in seconds that any bird spent in a particular plot. Time1 is different from Time2 in that if a family group was present, the young were not counted as individuals, (since they were probably just following their parent and not choosing that plot for any reason). For Time2, these young were counted as separate individuals. This is also true of pairs of birds. For Time1, they were counted as 1 total, and for Time2, they were counted as separate individuals.

Additional Files

An additional metadata file - bdbrdsur.dsd.txt - from the earlier Jornada information management system is included and may contain useful metadata.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Laura F Huenneke
Organization:New Mexico State University (Now at NAU)
Id:https://orcid.org/0000-0002-2562-6822
Contacts:
Organization:Jornada Basin LTER
Position:Jornada Basin LTER Information Manager
Address:
P.O. Box 30003, MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Phone:
575-646-1739
Email Address:
jornada.data@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu/information-management/
Associated Parties:
Individual: John Anderson
Organization:Jornada Basin LTER/New Mexico State University
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 U.S.A.
Email Address:
janderso@jornada.nmsu.edu
Id:https://orcid.org/0000-0002-6417-8022
Role:associate
Metadata Providers:
Organization:Jornada Basin LTER
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Web Address:
https://lter.jornada.nmsu.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1997-07-01
End:
1997-09-21
Geographic Region:
Description:Basin Floor: Study occurred in the basin floor geomorphic zone in the Jornada Basin. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.749487Southern:  32.473173
Western:  -106.872883Eastern:  -106.692716

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual:Dr. William Schlesinger
Address:
Earth and Ocean Sciences,
Duke University, A150 LSRC,
Durham, NC 27708 United States
Phone:
575-646-1739 (voice)
Email Address:
jornada.lter@nmsu.edu
Role:Principal Investigator
Abstract:

The Jornada Basin Long-Term Ecological Research (LTER) program is part of a national network of long-term ecological research sites funded by the US National Science Foundation (NSF). The Jornada LTER program has been continuously funded since 1982 to develop general principles governing changes between grassland and shrubland ecosystems based on long-term data collected in the Chihuahuan Desert. We translate our findings to dryland ecosystems around the world, and forecast the dynamics of future ecosystem states in response to changing climate and land use.

Funding:

At the time of this study, JRN LTER was funded by the National Science Foundation under award DEB 9411971.

Maintenance

Maintenance:
Description:completed
Frequency:notPlanned
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'number'
        |     |     |     |  \___attribute 'name' = 'number'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'a quantity or amount'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'sec'
        |     |     |     |  \___attribute 'id' = 'second'
        |     |     |     |  \___attribute 'multiplierToSI' = '1'
        |     |     |     |  \___attribute 'name' = 'second'
        |     |     |     |  \___attribute 'unitType' = 'time'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'SI unit of time'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

UNM logo UW-M logo