Data Package Metadata   View Summary

Rodent relative abundance data across grassland-shrubland ecotones at 3 sites in the Jornada Basin, 2004-ongoing

General Information
Data Package:
Local Identifier:knb-lter-jrn.210262008.2
Title:Rodent relative abundance data across grassland-shrubland ecotones at 3 sites in the Jornada Basin, 2004-ongoing
Alternate Identifier:DOI PLACE HOLDER
Abstract:

The objective of this ongoing study is to investigate how pulses of precipitation translate into pulses of plant aboveground net primary productivity (NPP) and how the small mammal community responds to such changes in relation to shrub gradients in northern Chihuahuan Desert landscapes. This dataset consists of rodent mark-recapture data from 4 consecutive night trapping events held annually in three habitat vegetation zones (grassland, ecotone, and shrubland) at three grassland-to-shrubland ecotone sites in the Jornada Basin, Dona Ana County, New Mexico, USA. Variables include rodent species, sex, reproductive status, weight, and maturity status.

Publication Date:2020-01-30

Time Period
Begin:
2004-07-13
End:
2018-10-26

People and Organizations
Contact:Manager, Data (Jornada Basin LTER) [  email ]
Creator:Bestelmeyer, Brandon (USDA ARS Jornada Experimental Range (JER))

Data Entities
Data Table Name:
Rodent relative abundance data across grassland-shrubland ecotones at 3 sites in the Jornada Basin, 2004-ongoing
Description:
Rodent relative abundance data across grassland-shrubland ecotones at 3 sites in the Jornada Basin, 2004-ongoing
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210262008/2/6c36e9026c43c0b1edd71b61f0d544fd
Name:Rodent relative abundance data across grassland-shrubland ecotones at 3 sites in the Jornada Basin, 2004-ongoing
Description:Rodent relative abundance data across grassland-shrubland ecotones at 3 sites in the Jornada Basin, 2004-ongoing
Number of Records:6524
Number of Columns:15

Table Structure
Object Name:Ecotone_Rodent_FirstCapture.csv
Size:747308 bytes
Authentication:372602bc065e6e34c146e861129e5a47 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:Year  
Date  
1 = first, 4 = last  
Site  
Habitat  
Station  
Tag  
Species_code  
Species_binomial  
Common_name  
Sex  
Rep  
Status  
Weight  
Comment  
Definition:year of samplingdate of samplingnight of 4-night sampling efffortsite namehabitat within sitetrapping station location within trapping gridID of tag affixed to/observed on rodentspecies code used in field data collectiongenus and species of rodentcommon name of rodent speciessex of rodentreproductive status of rodentrodent maturity statusweight of rodentcomment
Storage Type:date  
date  
float  
string  
string  
string  
string  
string  
string  
string  
string  
string  
string  
float  
string  
Measurement Type:dateTimedateTimerationominalnominalnominalnominalnominalnominalnominalnominalnominalnominalrationominal
Measurement Values Domain:
FormatYYYY
Precision
FormatYYYY-MM-DD
Precision
Unitdimensionless
Typenatural
Min
Max
Definitionsite name
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeE
Definitionecotone habitat portion of site
Source
Code Definition
CodeG
Definitiongrassland habitat portion of site
Source
Code Definition
CodeS
Definitionshrubland habitat portion of site
Source
Definitiontrapping station location within trapping grid
DefinitionID of tag affixed to/observed on rodent
Definitionspecies code used in field data collection
Definitiongenus and species of rodent
Definitioncommon name of rodent species
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeF
Definitionfemale
Source
Code Definition
CodeM
Definitionmale
Source
Code Definition
CodeU
Definitionsex unknown
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeR
Definitionreproductive
Source
Code Definition
CodeN
Definitionnot reproductive
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeL
Definitionlactating adult
Source
Code Definition
CodeP
Definitionpregnant adult
Source
Code Definition
CodeS
Definitionscrotal adult
Source
Code Definition
CodeV
Definitionvaginal adult
Source
Code Definition
CodeJ
Definitionjuvenile
Source
Code Definition
CodePS
Definitionpost-scrotal adult
Source
Code Definition
CodeA
Definitionadult
Source
Unitgram
Typenatural
Min
Max391 
Definitioncomment
Missing Value Code:          
Code.
Explstation not recorded
Code.
Expltag not read or not affixed (see methods)
       
Code.
Explreproductive status not recorded (see methods)
Code.
Explstatus not recorded (see methods)
Code.
Explweight not recorded (see methods)
Code.
Explno comment recorded
Accuracy Report:                              
Accuracy Assessment:                              
Coverage:                              
Methods:                              

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularynet primary production, aboveground production, vegetation, deserts, vascular plants, grasses, herbs, shrubs, plant
JRN Dataset KeywordsVegetation Dynamics, core
Jornada Project NamesEcotone, study 262
Jornada Place NamesPasture 12A, Pasture 9, CDRRC Pasture 3
LTER Core AreaPrimary Production, Populations
(No thesaurus)long-term experiment, Jornada Basin LTER, black grama, honey mesquite, shrub encroachment, shrub invasion, ecotone

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

<emphasis role="strong">Title</emphasis>

Rodent relative abundance data across grassland-shrubland ecotones at 3 sites in the Jornada Basin, 2004-ongoing

<emphasis role="strong">Abstract</emphasis>

The objective of this ongoing study is to investigate how pulses of precipitation translate into pulses of plant aboveground net primary productivity (ANPP) and how the small mammal community responds to such changes in relation to shrub gradients in northern Chihuahuan Desert landscapes. This dataset consists of an index of relative abundance of rodents calculated as the number of unique individuals captured. The abundance measure is derived from mark-recapture data from 4 consecutive night trapping events held annually in three habitat vegetation zones (grassland, ecotone, and mesquite shrubland) at three grassland-to-shrubland ecotone sites in the Jornada Basin, Dona Ana County, New Mexico, USA. Variables include rodent species, sex, reproductive status, weight, and maturity status.

<emphasis role="strong">Methods</emphasis>

This experiment was conducted at three sites, each with a grassland-to-shrubland ecotone. Two of the sites, JER Pasture 9 and JER Pasture 12A, occur on the USDA Agricultural Research Service Jornada Experimental Range. One site, CDRRC Pasture 3, is located on New Mexico State University’s Chihuahuan Desert Rangeland Research Center. Climate is arid to semi-arid, with long-term (90-year) mean annual temperature of 15C and mean annual precipitation of 250 mm, over half of which occurs in summer (July–September).

Sites were chosen to contain 3 distinct habitat types (or “ecotone positions”): grassland, ecotone, and shrubland. Within each habitat type of each site, a 300m x 100m rectangular trapping area was established. Trapping locations were arranged as a 16 x 6 grid within the trapping area with 20m spacing between traps, yielding 96 traps per habitat and 288 traps per site for a total of 864 trapping locations for the entire study. The trapping area encompasses the quadrats assessed for plant cover in data package knb-lter-jrn.210262001, which was used to calculate annual net primary productivity estimates available in data packages knb-lter-jrn.210262004 and knb-lter-jrn.210262005.

Livetrapping was conducted annually over 4 consecutive nights using Sherman model XLKR live traps baited with a seed mix. Traps were set in late afternoon/early evening and checked the following morning. Ear tags were affixed to rodents with ears large enough to support them. Rodents too small to affix ear tags were given a unique ID which was labeled on their ventral side with a permanent marker. Blue permanent markers were used on rodents trapped on the first night, black on the second night, and red on the third night. No permanent markers were used on rodents caught on the fourth night, but ear tags were still administered if possible. In addition to tagging/marking, rodents were weighed, identified to species, and assessed for sex, reproductive status, and maturity status. This dataset includes only the first capture of each individual each year on a habitat type within a site (a relative abundance index).

From 2004 to 2007, livetrapping occurred mostly during July. From 2008 to 2018, when the project had become part of long-term sampling by Jornada Basin LTER program, livetrapping occurred during October. The three habitat types within each site were trapped during the same week.

Observations in the dataset may have missing tags for several reasons, including: 1) rodents caught on the fourth night whose ears were too small for an ear tag, 2) rodents who escaped before an ear tag could be read, 3) rodents who escaped before an ear tag could be affixed, and 4) observer error. Reasons 2-4 may also apply to observations with missing values for Sex, Rep, and Status.

Also available are measures of rodent biomass in data package knb-lter-jrn.210262010.

People and Organizations

Creators:
Individual: Brandon Bestelmeyer
Organization:USDA ARS Jornada Experimental Range (JER)
Id:https://orcid.org/0000-0001-5060-9955
Contacts:
Individual: Data Manager
Organization:Jornada Basin LTER
Email Address:
datamanager.jrn.lter@gmail.com 

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2004-07-13
End:
2018-10-26
Geographic Region:
Description:Pastures 9 and 12A of the Jornada Experimental Range and Pasture 3 of the Chihuhuan Desert Rangeland Research Center, Jornada Basin, Dona Ana County, New Mexico, USA. For more detailed geographic locations of the plots please contact the Data Manager.
Bounding Coordinates:
Northern:  32.65576Southern:  32.5927
Western:  -106.8899Eastern:  -106.7595

Project

Parent Project Information:

Title:Multiple Stressors Experiment
Personnel:
Individual: Brandon Bestelmeyer
Organization:USDA ARS Jornada Experimental Range (JER)
Id:https://orcid.org/0000-0001-5060-9955
Role:Principal Investigator
Funding: USDA-ARS

Maintenance

Maintenance:
Description:ongoing
Frequency:
Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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