Data Package Metadata   View Summary

Plant phenology observations at 15 sites on the Jornada Basin, 1992-2018

General Information
Data Package:
Local Identifier:knb-lter-jrn.210287001.1
Title:Plant phenology observations at 15 sites on the Jornada Basin, 1992-2018
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This ongoing data package, which began in 1992, contains monthly plant phenological observations by species at the 15 Net Primary Production (NPP) study sites on Jornada Experimental Range (JER) and Chihuahuan Desert Rangeland Research Center (CDRRC) lands. Sites were selected to represent the 5 major ecosystem types in the Chihuahuan Desert (upland grasslands, playa grasslands, mesquite-dominated shrublands, creosotebush-dominated shrublands, tarbush-dominated shrublands). For each ecosystem type, three sites were selected to represent the range in variability in production and plant diversity; thus the locations are not replicates. A belt transect at each site is monitored monthly to assess the following phenological stages for each species: dormancy, non-reproductive status, budding, flowering, and fruiting. Sampling methods in the first years of the study monitored all plant species present but have been changed to focus on specific species at each site (see methods).

Publication Date:2020-01-28

Time Period
Begin:
1992-07-15
End:
2018-12-14

People and Organizations
Contact:Manager, Data (Jornada Basin LTER) [  email ]
Creator:Huenneke, Laura (New Mexico State University)

Data Entities
Data Table Name:
Plant phenology observations at 15 net primary production (NPP) study sites at Jornada Basin LTER, 1992-2018
Description:
Plant phenology observations at 15 net primary production (NPP) study sites at Jornada Basin LTER, 1992-2018
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210287001/1/8f0d0490eca261524e4ff7640596710e
Name:Plant phenology observations at 15 net primary production (NPP) study sites at Jornada Basin LTER, 1992-2018
Description:Plant phenology observations at 15 net primary production (NPP) study sites at Jornada Basin LTER, 1992-2018
Number of Records:22952
Number of Columns:29

Table Structure
Object Name:LTER_NPP_Phenology.csv
Size:2358724 bytes
Authentication:bc461186d853c1f392f2edd7e10b877e Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:date  
julian_day  
zone  
site  
LTER_code  
USDA_code  
Species_binomial  
dormant  
QF_dormant  
non_rep  
QF_non_rep  
bud  
QF_bud  
flower  
QF_flower  
fruit  
QF_fruit  
old_fruit_dormant  
old_fruit_non_rep  
total_old_fruit  
seedling  
QF_seedling  
total_obs  
percent_dormant  
percent_non_rep  
percent_bud  
percent_flower  
percent_fruit  
method  
Definition:date of observationjulian day of observationvegetation zonesite nameplant species code used in field samplingplant species code based on USDA PLANTS database (plants.usda.gov)plant genus and species, if knowncount of dormant individualsquality flag for count dormant individualscount of non-reproductive individualsquality flag for count of non-reproductive individualscount of individuals in budquality flag for count of individuals in budcount of individuals in flowerquality flag for count of individuals in flowercount of individuals in fruitquality flag for count of individuals in fruitcount of dormant individuals with old fruitcount of non-reproductive individuals with old fruitcount of individuals with old fruitseedling countquality flag for seedling counttotal individuals observedpercent of individuals observed that are dormantpercent of individuals observed that are non-reproductivepercent of individuals observed that are in budpercent of individuals observed that are in flowerpercent of individuals observed that are fruitingsampling method used
Storage Type:date  
float  
string  
string  
string  
string  
string  
float  
string  
float  
string  
float  
string  
float  
string  
float  
string  
float  
float  
float  
float  
string  
float  
float  
float  
float  
float  
float  
string  
Measurement Type:dateTimerationominalnominalnominalnominalnominalrationominalrationominalrationominalrationominalrationominalratioratioratiorationominalratioratioratioratioratiorationominal
Measurement Values Domain:
FormatYYYY-MM-DD
Precision
Unitdimensionless
Typenatural
Min
Max357 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeG
Definitiongrassland (Bouteloua eriopoda) vegetation zone
Source
Code Definition
CodeM
Definitionmesquite (Prosopis glandulosa) vegetation zone
Source
Code Definition
CodeP
Definitionplaya (Pleuraphis mutica, Panicum obtusum) vegetation zone
Source
Code Definition
CodeT
Definitiontarbush (Flourensia cernua) vegetation zone
Source
Code Definition
CodeL
Definitioncreosote (Larrea tridentata) vegetation zone
Source
Definitionsite name
Definitionplant species code used in field sampling
Definitionplant species code based on USDA PLANTS database (plants.usda.gov)
Definitionplant genus and species, if known
Unitdimensionless
Typewhole
Min
Max625 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
Definitionmissing
Source
Code Definition
CodeQ
Definitionquestionable
Source
Code Definition
CodeE
Definitionestimated
Source
Unitdimensionless
Typewhole
Min
Max1300 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
Definitionmissing
Source
Code Definition
CodeQ
Definitionquestionable
Source
Code Definition
CodeE
Definitionestimated
Source
Unitdimensionless
Typewhole
Min
Max633 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
Definitionmissing
Source
Code Definition
CodeE
Definitionestimated
Source
Code Definition
CodeQ
Definitionquestionable
Source
Unitdimensionless
Typewhole
Min
Max533 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
Definitionmissing
Source
Code Definition
CodeE
Definitionestimated
Source
Code Definition
CodeQ
Definitionquestionable
Source
Unitdimensionless
Typewhole
Min
Max1232 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
Definitionmissing
Source
Code Definition
CodeE
Definitionestimated
Source
Code Definition
CodeQ
Definitionquestionable
Source
Unitdimensionless
Typewhole
Min
Max625 
Unitdimensionless
Typewhole
Min
Max426 
Unitdimensionless
Typewhole
Min
Max625 
Unitdimensionless
Typewhole
Min
Max541 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeE
Definitionestimated
Source
Unitdimensionless
Typenatural
Min
Max1760 
Unitdimensionless
Typereal
Min
Max100 
Unitdimensionless
Typereal
Min
Max100 
Unitdimensionless
Typereal
Min
Max100 
Unitdimensionless
Typereal
Min
Max100 
Unitdimensionless
Typereal
Min
Max100 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeB
Definitionbelt transect
Source
Code Definition
CodeL
Definitionline transect
Source
Missing Value Code:              
Code.
Expldata record is missing
Code.
Explno quality flag recorded
Code.
Expldata record is missing
Code.
Explno quality flag recorded
Code.
Expldata record is missing
Code.
Explno quality flag recorded
Code.
Expldata record is missing
Code.
Explno quality flag recorded
Code.
Expldata record is missing
Code.
Explno quality flag recorded
Code.
Expldata record is missing
Code.
Expldata record is missing
Code.
Expldata record is missing
Code.
Expldata record is missing
Code.
Explno quality flag recorded
Code.
Expldata record is missing
Code.
Expldata record is missing
Code.
Expldata record is missing
Code.
Expldata record is missing
Code.
Expldata record is missing
Code.
Expldata record is missing
 
Accuracy Report:                                                          
Accuracy Assessment:                                                          
Coverage:                                                          
Methods:                                                          

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularyphenology, plant phenology, vegetation, deserts, vascular plants, grasses, herbs, shrubs, long-term monitoring, plant
JRN Dataset KeywordsVegetation Dynamics, core
Jornada Place NamesNPP locations, C-CALI, C-GRAV, C-SAND, G-BASN, G-IBPE, G-SUMM, M-NORT, M-RABB, M-WELL, P-COLL, P-SMAL, P-TOBO, T-EAST, T-TAYL, T-WEST
Jornada Study Namesstudy 287, NPP
LTER Core AreaPopulations
(No thesaurus)Jornada Basin LTER, black grama, honey mesquite

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Each of the 15 NPP plots is to be monitored monthly (done as near to the 15th day of each month as possible) for the phenological condition of perennial grasses and woody plants. This monitoring will result in counts of plants in each of several states, from which percentages can be calculated. Sampling is done along the west and south side of each NPP plot by walking along the outside of the plot with the center of a meter stick held perpendicular to an imaginary line that connects all the buffer zone corner posts. Exceptions: there are no buffers at the three playa sites or at M-NORT, or along the south side of G-SUMM. On these sites the S and W boundaries of the NPP plot itself are walked with the 100cm end of the meter stick touching the outside of the rebar. At P-COLL the E and N boundaries of the NPP plot itself are walked. In January 2001 there was a change in methodology at P-TOBO; the E and S boundaries are walked. All perennial grasses, shrubs and subshrubs species falling within this 1 meter wide belt will be tallied in one of the following categories: dormant, non-reproductive (non-rep), in bud, fully open flowers, mature fruits. The most advanced phenological stage present is the one recorded; a plant is considered to be in flower (for example), if there is at least one open flower present (even if the majority of flowers are in the bud stage). Tallies are to be done in the dot-box method, where each individual is tallied as either a dot or line; 4 dots from corners of a box, and additional counts are represented as lines joining the corners and forming 2 diagonals (completed box with diagonals = count of 10). Each species in a site will have its own line on the data sheet. The following grass species are considered "path-forming" species: BOER, MUPO, and PLMU. For these species, the entire patch is considered a single tally. A patch is defined as a contiguous area of overlapping vegetation with no easily discernable distinctions between basal units when viewed from above. Certain species of grasses are present in large numbers at some sites. These grasses are measured along a line intercept, as opposed to a belt transect, running between the S and W buffer zone rebars. Each patch or individual of these species that contacts the line is tallied. This method applies to the following grasses at the following sites: BOER - all sites DAPU - M-RABB, C-CALI, and C-SAND MUAR - T-TAYL PLMU - P-TOBO SCBR - G-BASN, T-EAST, T-TAYL, T-WEST SPAI - P-TOBO At two playa sites where PAOB is found in dense stands, each square meter (using the meter stick) along the line was checked for reproductive state rather than the entire line being counted as one. This resulted in high counts of 170 at P-COLL and 140 at P-SMAL. As counts are essential for data analysis, a count is obtained for each plant even when all plants of a species are in a single state rather than just "all" being recorded. In addition to reproductive phenology, information on dates of leaf drop or dormancy in those species which are not green over the winter (or in drought periods) is recorded. Those individuals which have dropped leaves or otherwise appear to be dormant, i.e. grass with no visible green, are tallied in the "dormant" column. If everything is dormant, phenology is not recorded or read to minimize traffic. In certain seasons seedlings are present in large numbers. A separate tally for seedlings should be made and recorded in the comments section on the data sheet. These individuals can be added to the total phenological counts once the plants have reached reproductive size. Certain species require specific instructions regarding method of tallying. At M-NORT and M-RABB, each mesquite dune is considered one PRGL tally. At the three tarbush sites and G-BASN, the dioecious grass SCBR is present; when determining phenology, flowering individuals must be male plants whereas fruiting individuals must be female plants. Note: Individual plant tally numbers will change from month to month as a person cannot walk the exact same transect line each census. Extra effort should be made not to miss individuals of species which are not abundant on a given transect to ensure useable data are collected. Often species abundance changes over time due to recruitment and senescence. If the line-transect method is used for a particular species (such as DAPU) and the number of individuals drops consistently to small numbers, it is appropriate to swith back to the belt transect method with approval from Laura Huenneke. All changes should be noted in the history log. Protocol for Documentation and Data Entry: 1. Enter data into PLPHXXXX.xls immediately following field work (where XXXX represents data set year. Data entry should take less than 15 minutes. Remember to update header 'last updated' information. 2. Save excel file and update NPPPhen.his if necessary. Remember to add update info at the end of the file. Save history file. 3. Send both files to John Anderson for archiving. Any updates to history log or data file added between field days should be sent to John. 4. At the end of the calendar year history log and excel files are sent to John and an ascii version of the data file should be created. a. In excel replace blank cells with periods. Highlight area where blanks should be replaced with zeros. Go to 'Edit' and 'Replace.' Leave the 'Find What' cell blank and add a zero in the 'replace with' cell. Click Replace all. (This may not be available in more recent versions of excel.) b. Left align Column K. Select columns A through K (comment column) and copy. c. In KEDIT open new file. Paste excel columns. Make sure appropriate header and variable information is present. (see other *.dat files if in doubt.) d. Save as PLPHxxxx.dat (where XXXX represents data set year). e. Send ascii version to John. 5. Take raw data sheets and bind them with purple cover sheets. PH_book_cover.doc contains the cover sheet file. 6. Create new excel file for next calendar year (simply open old file, 'Save As' the new file year name, and delete old data points).

People and Organizations

Creators:
Individual: Laura Huenneke
Organization:New Mexico State University
Id:https://orcid.org/0000-0002-2562-6822
Contacts:
Individual: Data Manager
Organization:Jornada Basin LTER
Email Address:
datamanager.jrn.lter@gmail.com

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1992-07-15
End:
2018-12-14
Geographic Region:
Description:NPP is measured at 15 sites, spanning 5 vegetation community types in the Jornada Basin. This bounding box includes all 15 sites. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager.
Bounding Coordinates:
Northern:  32.669Southern:  32.488
Western:  -106.865Eastern:  -106.713

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual: Dawn Browning
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0002-1252-6013
Role:Principal Investigator
Funding: NSF: DEB-1832194

Maintenance

Maintenance:
Description:ongoing
Frequency:
Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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