Data Package Metadata   View Summary

Annual measurements of vegetation cover on line-point intercept transects from the three Conmod Pilot study locations at Jornada Basin LTER, 2008-2016

General Information
Data Package:
Local Identifier:knb-lter-jrn.210308002.2
Title:Annual measurements of vegetation cover on line-point intercept transects from the three Conmod Pilot study locations at Jornada Basin LTER, 2008-2016
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package contains annual measurements of vegetation cover, species, and height from transects at the Connectivity Modifier (Conmod) Pilot study on the Jornada Experimental Range from 2008-2016. There were 3 sites for this study: Gravelly Ridges, Aeolian, and Dona Ana. Within each site, there were 8 study plots, 4 of which were treatment plots where connectivity modules (conmods) were installed to decrease gap sizes between perennial vegetation. The plots were 8 x 8 meters and had an 8 x 8 meter buffer zone on both sides of the plot (upwind and downwind). Beginning in 2008, vegetation cover by species, and vegetation heights were collected annually in all plots using the line-point intercept method. These data were collected in 2008-2010, 2012 and 2016. At each plot, four parallel 24-meter transects crossing the upwind buffer, the plot, and the downwind buffer were measured. These parallel transects were spaced at 0.8, 2.8, 4.3, and 7.2 meter intervals across the plot and buffer areas. Vegetation cover and height were read at points arranged at 25 centimeter increments along each transect. This study is complete (finished in 2016) and was the pilot study to the newer Cross Scale Interactions Study.

Publication Date:2019-11-20

Time Period
Begin:
2008-06-10
End:
2016-08-09

People and Organizations
Contact:Peters, Debra (USDA-ARS Jornada Experimental Range) 
Contact:Manager, Data (Jornada Basin LTER) [  email ]
Creator:Okin, Gregory S (University of California Los Angeles)
Creator:Peters, Debra (USDA-ARS Jornada Experimental Range)
Creator:Herrick, Jeff (USDA-ARS Jornada Experimental Range)

Data Entities
Data Table Name:
Cover and height data, in centimeters, from line-point-intercept transects
Description:
Cover and height data, in centimeters, from line-point-intercept transects
Data Table Name:
Key to cover codes in line point intercept data
Description:
Key to cover codes in line point intercept data
Other Name:
Comment history for Conmod Pilot data
Description:
Comment history for Conmod Pilot data
Other Name:
Treatment and measurement design schematic for Conmod Pilot sites
Description:
Treatment and measurement design schematic for Conmod Pilot sites
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210308002/2/4a7f7f780b00fe1ab9c07e7f0065ca88
Name:Cover and height data, in centimeters, from line-point-intercept transects
Description:Cover and height data, in centimeters, from line-point-intercept transects
Number of Records:46080
Number of Columns:19

Table Structure
Object Name:JRN_308002_conmod_pilot_veg_line_point_int.csv
Size:3238469 bytes
Authentication:05f07250ce60537e93b5426831cda7de Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:Site  
Plot  
Line  
Treatment  
Date  
PointLoc  
PointNbr  
TopCanopy  
Lower1  
Lower2  
Lower3  
Lower4  
SoilSurface  
HeightTop  
HeightLower1  
HeightWoody  
SpeciesWoody  
HeightHerbaceous  
SpeciesHerbaceous  
Definition:Site identifier [ A, D, G ]Plot number [1-8]Transect number and buffer location [ 1-4; 1 Buffer down - 4 Buffer down; 1 Buffer up - 4 Buffer up ]Treatment [C=control, conmods absent;<ca> T=treatment with conmods (no conmods in buffer)]Sample dateDistance along line-point transect [0 - 8 meters with points in 0.25 m increments]Point number along transect [1-32]Top canopy intercept cover USDA Plants code [COOP = conmod coop, L = litter, R = rock, S = soil, WL = woody litter; other codes see plants.usda.gov]Lower canopy intercept 1 USDA Plants code<ca> [COOP = conmod coop, L = litter, R = rock, S = soil, WL = woody litter; other codes see plants.usda.gov]Lower canopy intercept 2 USDA Plants code [see plants.usda.gov]Lower canopy intercept 3 USDA Plants code [see plants.usda.gov]Lower canopy intercept 4 USDA Plants code [see plants.usda.gov]Soil surface intercept code [COOP = conmod coop, L = litter, R = rock, S = soil, WL = woody litter; other codes see plants.usda.gov]Disk height for TopCanopy (cm)Disk height for Lower1 (cm)Height of tallest element of woody plant within 15cm of PointLoc (cm) [ONLY FOR 2016]Species of tallest element of woody plant within 15cm of PointLoc [USDA Plants code (plants.usda.gov) ONLY FOR 2016]Height of tallest element of herbaceous plant within 15cm of PointLoc (cm) [ONLY FOR 2016]Species of tallest element of herbaceous plant within 15cm of PointLoc<ca> [USDA Plants code (plants.usda.gov) ONLY FOR 2016]
Storage Type:string  
float  
string  
string  
date  
float  
float  
string  
string  
string  
string  
string  
string  
float  
float  
float  
string  
float  
string  
Measurement Type:nominalrationominalnominaldateTimeratiorationominalnominalnominalnominalnominalnominalratioratiorationominalrationominal
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeA
DefinitionAeolian site
Source
Code Definition
CodeD
DefinitionDona Ana site
Source
Code Definition
CodeG
DefinitionGravelly Ridges site
Source
Unitnumber
Typenatural
Min
Max
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionTransect 1
Source
Code Definition
Code1 Buffer Down
DefinitionTransect 1 downwind buffer
Source
Code Definition
Code1 Buffer Up
DefinitionTransect 1 upwind buffer
Source
Code Definition
Code2
DefinitionTransect 2
Source
Code Definition
Code2 Buffer Down
DefinitionTransect 2 downwind buffer
Source
Code Definition
Code2 Buffer Up
DefinitionTransect 2 upwind buffer
Source
Code Definition
Code3
DefinitionTransect 3
Source
Code Definition
Code3 Buffer Down
DefinitionTransect 3 downwind buffer
Source
Code Definition
Code3 Buffer Up
DefinitionTransect 3 upwind buffer
Source
Code Definition
Code4
DefinitionTransect 4
Source
Code Definition
Code4 Buffer Down
DefinitionTransect 4 downwind buffer
Source
Code Definition
Code4 Buffer Up
DefinitionTransect 4 upwind buffer
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeT
DefinitionTreatment plot - central treatment plots have conmods present; treatment buffer plots do not
Source
Code Definition
CodeC
DefinitionControl plot - conmods absent
Source
FormatYYYY-MM-DD
Precision
Unitmeter
Typereal
Min0.25 
Max
Unitnumber
Typenatural
Min
Max32 
DefinitionTop canopy intercept cover USDA Plants code [COOP = conmod coop, L = litter, R = rock, S = soil, WL = woody litter; other codes see plants.usda.gov]
DefinitionLower canopy intercept 1 USDA Plants code<ca> [COOP = conmod coop, L = litter, R = rock, S = soil, WL = woody litter; other codes see plants.usda.gov]
DefinitionLower canopy intercept 2 USDA Plants code [see plants.usda.gov]
DefinitionLower canopy intercept 3 USDA Plants code [see plants.usda.gov]
DefinitionLower canopy intercept 4 USDA Plants code [see plants.usda.gov]
DefinitionSoil surface intercept code [COOP = conmod coop, L = litter, R = rock, S = soil, WL = woody litter; other codes see plants.usda.gov]
Unitcentimeter
Typereal
Min
Max9999 
Unitcentimeter
Typereal
Min
Max9999 
Unitcentimeter
Typereal
Min
Max180 
DefinitionSpecies of tallest element of woody plant within 15cm of PointLoc [USDA Plants code (plants.usda.gov) ONLY FOR 2016]
Unitcentimeter
Typereal
Min
Max44 
DefinitionSpecies of tallest element of herbaceous plant within 15cm of PointLoc<ca> [USDA Plants code (plants.usda.gov) ONLY FOR 2016]
Missing Value Code:              
CodeNA
ExplMissing data
CodeNA
ExplMissing data
CodeNA
ExplMissing data
CodeNA
ExplMissing data
CodeNA
ExplMissing data
CodeNA
ExplMissing data
CodeNA
ExplMissing data
CodeNA
ExplMissing data
CodeNA
ExplMissing data
CodeNA
ExplMissing data
CodeNA
ExplMissing data
CodeNA
ExplMissing data
Accuracy Report:                                      
Accuracy Assessment:                                      
Coverage:                                      
Methods:                                      

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210308002/2/d7802654f803a43797b24c0f76c07edf
Name:Key to cover codes in line point intercept data
Description:Key to cover codes in line point intercept data
Number of Records:67
Number of Columns:7

Table Structure
Object Name:ConMod_covercode_key.csv
Size:4381 bytes
Authentication:f8ddf24a225587afe78343a9fe5a366a Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:LPI_code  
Scientific  
Common  
GrowthHabit  
SubCode  
Duration  
is_USDA_Plants_code  
Definition:Cover code used in the LPI data fileScientific name of cover vegetationCommon name of cover (including non-vegetation covers)Growth habit of vegetation coverAdditional vegetation form categoricalLife history/duration of vegetation coverTrue/False - is LPI code a known USDA Plants database (plants.usda.gov) code?
Storage Type:string  
string  
string  
string  
string  
string  
string  
Measurement Type:nominalnominalnominalnominalnominalnominalnominal
Measurement Values Domain:
DefinitionCover code used in the LPI data file
DefinitionScientific name of cover vegetation
DefinitionCommon name of cover (including non-vegetation covers)
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeNon-woody
DefinitionNon-woody vegetation
Source
Code Definition
CodeWoody
DefinitionWoody vegetation
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeForb/herb
DefinitionForb, or herbaceous vegetation
Source
Code Definition
CodeGraminoid
DefinitionGrass or other graminoid vegetation
Source
Code Definition
CodeShrub
DefinitionShrub vegetation
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeAnnual
DefinitionAnnual vegetation life history
Source
Code Definition
CodePerennial
DefinitionPerennial vegetation life history
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeFALSE
DefinitionLPI_code is NOT a USDA Plants database code
Source
Code Definition
CodeTRUE
DefinitionLPI_code is a USDA Plants database code
Source
Missing Value Code:
CodeNA
ExplLPI_code missing in data file
CodeNA
ExplNo scientific name known or non-vegetation cover
CodeNA
ExplLPI_code missing in data file
CodeNA
ExplNo growth habit known or non-vegetation cover
CodeNA
ExplNo subcode known or non-vegetation cover
CodeNA
ExplNo duration known or non-vegetation cover
 
Accuracy Report:              
Accuracy Assessment:              
Coverage:              
Methods:              

Non-Categorized Data Resource

Name:Comment history for Conmod Pilot data
Entity Type:unknown
Description:Comment history for Conmod Pilot data
Physical Structure Description:
Object Name:Connectivity-pilot_his.txt
Size:23208 bytes
Authentication:c4c391571a142ef6b942a7874905325d Calculated By MD5
Externally Defined Format:
Format Name:unknown
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210308002/2/cab4a220d2f45562187855ceeb49c4c3

Non-Categorized Data Resource

Name:Treatment and measurement design schematic for Conmod Pilot sites
Entity Type:unknown
Description:Treatment and measurement design schematic for Conmod Pilot sites
Physical Structure Description:
Object Name:Connectivity_Study_Design_Schematic.pdf
Size:54627 bytes
Authentication:3fe3019ce820be067c79329dffb1a1bc Calculated By MD5
Externally Defined Format:
Format Name:unknown
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210308002/2/71a5d6d6c2fb49407820c0ba0fb2b654

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabularycanopy cover, land surface properties, plant cover, plant species composition, vegetation, transects, wind, deserts, species diversity, plant height
JRN Dataset KeywordsVegetation Dynamics, LTER V, Management Practices
Jornada Project NamesConmod, study 308
Jornada Place NamesGravelly Ridges, Aeolian, Dona Ana
LTER Core AreaDisturbance, Land Use and Land Cover Change
(No thesaurus)line-point intercept, lpi

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Connectivity Modifier (Conmod) Pilot methods

For the data table in this data package, vegetation cover, species, and height were measured using the line-point intercept method described by Herrick et al. (2005). Archived and updated versions of this document are available at https://www.landscapetoolbox.org/manuals/ . Observations impacting the quality of these measurements are recorded in the history file. A schematic of how the line-point intercept transects were arranged with respect to the study plots is also included in the data package. Both of these documents are listed in the "Additional documents" section below)

Basic Study Set Up and Location

There are 3 sites for the Conmod Pilot study: Gravelly Ridges, Aeolian, and Dona Ana (referred to as G, A, and D, respectively). Within each site, there are 8 plots. The plots are 8 x 8 meters and have an 8 x 8 meter buffer zone on both sides of the plot (upwind and downwind). At each site, 4 of the 8 plots are treatment plots where connectivity modules (conmods) have been installed to decrease the gap size between perennial vegetation. The other 4 plots are untreated controls. Buffer zones do not have conmods installed.

Four parallel line-point intercept transects (numbered 1-4) were established at each plot in 2008. These transects were laid out across the upwind buffer (8 m), the plot (8 m), and the downwind buffer (8 m) for a total distance of 24 meters each. The 4 parallel transects were spaced evenly across each plot at 0.8, 2.8, 4.3, and 7.2 meter intervals. Along each transect intercept points were arranged at 25 cm intervals and cover was measured at each point by dropping a pinflag and observing woody and herbaceous vegetation that intercepted this pin. For each point, a top level intercept and up to 4 lower level intercepts were observed. The species or cover type (plant id, conmod, etc.) of the top and first lower level intercepts (if present) were recorded. If possible, the height of these two intercepts was measured using the disc method. Only species/cover type was recorded for below the first lower level intercept (Lower2-4). The cover type (plant, soil, conmod, etc.) at the soil surface at the bottom of each pin was also recorded. In 2016 the measurement method changed so that woody and herbaceous plants were recorded separately at each point. Species identity (or cover type) and height of the largest woody AND herbaceous plants within 15 cm of each transect point was recorded that year. Measurements for this data package were made annually during the summer in 2008-2010, and again in 2012 and 2016.

IMPORTANT NOTES

NOTE 1: Plant species codes in the "TopCanopy", "Lower1", "Lower2","Lower3", "Lower4", "SpeciesWoody", and "SpeciesHerbaceous" columns of the data file generally correspond to USDA Plants Database codes (plants.usda.gov). However, there are a number of codes specific to data collection in this study. The included "ConMod_covercode_key.csv" file contains explanations of all cover codes. Further details about recognized taxa may be found in the "JRN Vascular Plants" EDI package (knb-lter-jrn.210520001).

Treatment plots by site

Aeolian site: 1,3,6,7 (Control plots are 2,4,5,8)

Dona Ana site: 1,3,6,8 (Control plots are 2,4,5,7)

Gravelly Ridges site: 2,4,6,8 (Control plots are 1,3,5,7)

Additional documents

A schematic of the line-point intercept transects (though only 3 are shown) are found in "Connectivity_Study_Design_Schematic.pdf"

Historical and contextual notes about data collection (and the "comments" column) are found in the file "Connectivity-pilot_his.txt"

References

Herrick, J. E., J. W. Van Zee, K. M. Havstad, L. M. Burkett, and W. G. Whitford. "Monitoring manual for grassland, shrubland and savanna ecosystems, Volume I." US Department of Agriculture-Agriculture Research Service, Jornada Experimental Range, Las Cruces, New Mexico (2005).

People and Organizations

Creators:
Individual: Gregory S Okin
Organization:University of California Los Angeles
Id:https://orcid.org/0000-0002-0484-3537
Individual: Debra Peters
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0002-5842-8099
Individual: Jeff Herrick
Organization:USDA-ARS Jornada Experimental Range
Contacts:
Individual: Debra Peters
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0002-5842-8099
Individual: Data Manager
Organization:Jornada Basin LTER
Email Address:
datamanager.jrn.lter@gmail.com

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2008-06-10
End:
2016-08-09
Geographic Region:
Description:A (Aeolian) collectors located in the Basin Floor. Contact the data manager for more precise study coordinates.
Bounding Coordinates:
Northern:  32.7494871013Southern:  32.4731725883
Western:  -106.87288312Eastern:  -106.692716261
Geographic Region:
Description:G (Gravelly ridges) collectors located in East Bajada. Contact the data manager for more precise study coordinates.
Bounding Coordinates:
Northern:  32.68957116Southern:  32.53118449
Western:  -106.6846111Eastern:  -106.5903632
Geographic Region:
Description:D (Dona Ana) collectors located in the West Bajada. Contact the data manager for more precise study coordinates.
Bounding Coordinates:
Northern:  32.5427713Southern:  32.46722784
Western:  -106.8514602Eastern:  -106.7294433

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual: Debra Peters
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0002-5842-8099
Role:Principal Investigator
Funding: NSF: DEB-1832194

Maintenance

Maintenance:
Description:Data collected annually 2008-2010, 2012 and 2016. The Conmod Pilot project is now completed.
Frequency:

Additional Info

Additional Information:
 

There are 3 site locations:  Aeolian, Dona Ana, Gravelly Ridges.  The UTM coordinates below are approximate, and based on the UAV photo coverage we have for each site.

Precise GPS coordinates are available.

Dona Ana.  These are located north of Herrick’s SD97C (Surface Disturbance) exclosure, which is north of the Dona Ana exclosure, which is in the SW corner of JER Pasture 6.

   DA1     334992.42476300000      3596630.43159000000    DA2     334992.42675400000      3596112.28705000000    DA3     335490.35961900000      3596112.30170000000    DA4     335490.36881400000      3596630.40896000000

Aeolian. These are located just east of the gas pipeline, near the scrape site.

   AE1     334253.41442800000      3606226.21293000000    AE2     333263.17702400000      3606226.21887000000    AE3     333263.16474900000      3605411.37177000000    AE4     334253.40961100000      3605411.35650000000

Gravelly Ridges.  These are located south of the SE corner of the Gravelly Ridges exclosure, north of the road to NASA.  All are outside of the exclosure.

   GR1     350381.01412200000      3604795.02860000000    GR2     349883.09428900000      3604795.02926000000    GR3     349883.11877100000      3604276.88904000000    GR4     350381.05237400000      3604276.87003000000

Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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