Data Package Metadata View Summary

Soil chemistry and nutrient distribution in long-term NPP plots at the Jornada Basin LTER site, 1989

General Information

Data Package:

Local Identifier:

knb-lter-jrn.210398001.1

Title:

Soil chemistry and nutrient distribution in long-term NPP plots at the Jornada Basin LTER site, 1989

Alternate Identifier:

DOI PLACE HOLDER

Abstract:

This is an example dataset for testing `jerald` and the Jornada IM system using dataset 210398001. Data here come from R’s `mtcars` example dataset.

You can replace this abstract with one for your dataset.

Short Name:

NPPSCHEM 1989

Publication Date:

2022-03-18

Language:

English

For more information:
Visit:	https://jrn.lternet.edu
Visit:	DOI PLACE HOLDER

Time Period

Begin:

1989-06-01

End:

1989-06-30

People and Organizations
Contact:	Jornada Basin LTER Information Manager (Jornada Basin LTER) [ email ]
Creator:	Jarrell, Wes (New Mexico State University)
Creator:	Virginia, Ross (Dartmouth College)
Creator:	Silva, Solange (New Mexico State University)
Creator:	McBride, Robin (New Mexico State University)

Data Entities
Data Table Name:	Soil chemistry and nutrients table
Description:	Soil nutrients and chemistry analysis data from replicate soil cores collected at 15 NPP sites in June 1989
Other Name:	JRN DSD file (Dataset Documentation)
Description:	Early format Jornada metadata file for this dataset.

Detailed Metadata

Data Entities

Data Table


Data:	https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210398001/1/85533ede418725e0e7398e497aa6f5eb
Name:	Soil chemistry and nutrients table
Description:	Soil nutrients and chemistry analysis data from replicate soil cores collected at 15 NPP sites in June 1989
Number of Records:	750
Number of Columns:	25

Table Structure

Object Name:

JRN398001_npp_soilchem_1989.csv

Size:

90595 byte

Authentication:

d3e53fec4450461d8a5d11f79787a9c4 Calculated By MD5

Text Format:

Number of Header Lines:

Number of Foot Lines:

Record Delimiter:

Orientation:

column

Simple Delimited:

Field Delimiter:	,
Quote Character:	"

Table Column Descriptions

Sample date

Vegetation zone

Site

Direction

Location

Depth

Phosphate P

Nitrate N

Ammonium N

Total Kjeldal N

Zinc

Copper

Iron

Manganese

Saturation percentage

Electrical conductivity

Potassium

Sodium

Calcium

Magnesium

Total Cations

Estimated total EC

Sodium adsorption ratio

Percent Carbon

Column Name:

sample_date

zone

site

dir

loc

depth

po4_p

no3_n

nh4_n

tkn

sat_pct

totcat

ecx10

sar

pct_c

Definition:

Date of soil sampling (all in June 1989)

Vegetation zone

Jornada NPP study site code (15 total)

Direction of buffer zone outside NPP plots that was sampled

Sampling location in buffer zone

Sampling depth range in cm below surface

Phosphorus in phosphate - mg/kg

Nitrogen in nitrate - mg/kg

Nitrogen in ammonium - mg/kg

Total Kjeldahl Nitrogen - g/kg

Zinc in mg/kg

Copper in mg/kg

Iron in mg/kg

Manganese in mg/kg

Saturation percentage

Electrical conductivity in deci-Seimens per meter

Potassium in microequivalents per liter

Sodium in microequivalents per liter

Calcium in microequivalents per liter

Magnesium in microequivalents per liter

Total cations in microequivalents per liter

Estimate of total electrical conductivity (metadata unclear on this)

Sodium Adsorption Ratio = na / (square root of (ca+mg) / 2) using meq concentrations

Percent organic carbon

Storage Type:

dateTime

string

float

Measurement Type:

dateTime

nominal

ratio

Measurement Values Domain:

Format	YYYY-MM-DD
Precision	1

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	C
Definition	Creosote shrubland vegetation type
Source

Code Definition

Code	G
Definition	Grassland vegetation type
Source

Code Definition

Code	M
Definition	Mesquite dune vegetation type
Source

Code Definition

Code	P
Definition	Playa vegetation type (grassland)
Source

Code Definition

Code	T
Definition	Tarbush vegetation type
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	BASN
Definition	Basin site (grassland at lower trailer)
Source

Code Definition

Code	CALI
Definition	Caliche site (creosote shrubland)
Source

Code Definition

Code	COLL
Definition	College Ranch site (playa)
Source

Code Definition

Code	EAST
Definition	East of Jornada road tarbush site (tarbush)
Source

Code Definition

Code	GRAV
Definition	Gravel site (creosote shrubland)
Source

Code Definition

Code	IBPE
Definition	IBP Exclosure site (grassland)
Source

Code Definition

Code	NORT
Definition	North natural vegetation exclosure site (mesquite)
Source

Code Definition

Code	RABB
Definition	Rabbit rain gauge site (mesquite)
Source

Code Definition

Code	SAND
Definition	Sand site (creosote shrubland; formerly UPTR - upper trailer)
Source

Code Definition

Code	SMAL
Definition	Small site (playa)
Source

Code Definition

Code	SUMM
Definition	Mt. Summerford site (grassland)
Source

Code Definition

Code	TAYL
Definition	Taylor well site (tarbush)
Source

Code Definition

Code	TOBO
Definition	Tobosa tank site (playa)
Source

Code Definition

Code	WELL
Definition	West well site (mesquite)
Source

Code Definition

Code	WEST
Definition	West of Jornada road tarbush site (tarbush)
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	C
Definition	Center
Source

Code Definition

Code	E
Definition	East
Source

Code Definition

Code	N
Definition	North
Source

Code Definition

Code	S
Definition	South
Source

Code Definition

Code	W
Definition	West
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	B
Definition	Between plants - Midpoint between sampled shrub or grass clump and nearest neighbor
Source

Code Definition

Code	U
Definition	Under canopy - For shrubs between midpoint main stem and edge of canopy
Source

Allowed Values and Definitions

Enumerated Domain

Code Definition

Code	0-10
Definition	sampled 0-10 cm below surface
Source

Code Definition

Code	10-20
Definition	sampled 10-20 cm below surface
Source

Code Definition

Code	20-40
Definition	sampled 20-40 cm below surface
Source

Code Definition

Code	40-60
Definition	sampled 40-60 cm below surface
Source

Code Definition

Code	60-100
Definition	sampled 60-100 cm below surface
Source

Code Definition

Code	60-75
Definition	sampled 60-75 cm below surface
Source

Unit	milligramPerKilogram
Type	real

Unit	milligramPerKilogram
Type	real

Unit	milligramPerKilogram
Type	real

Unit	gramsPerKilogram
Type	real

Unit	milligramPerKilogram
Type	real

Unit	milligramPerKilogram
Type	real

Unit	milligramPerKilogram
Type	real

Unit	milligramPerKilogram
Type	real

Unit	percent
Type	real

Unit	pH
Type	real

Unit	decisiemensPerMeter
Type	real

Unit	microequivalentPerLiter
Type	real

Unit	microequivalentPerLiter
Type	real

Unit	microequivalentPerLiter
Type	real

Unit	microequivalentPerLiter
Type	real

Unit	microequivalentPerLiter
Type	real

Unit	decisiemensPerMeter
Type	real

Unit	dimensionless
Type	real

Unit	percent
Type	real

Missing Value Code:

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Code	NA
Expl	Missing value - data not collected or otherwise unavailable

Accuracy Report:

Accuracy Assessment:

Coverage:

Methods:

Non-Categorized Data Resource

Name:

JRN DSD file (Dataset Documentation)

Entity Type:

otherEntity

Description:

Early format Jornada metadata file for this dataset.

Physical Structure Description:

Object Name:

nppschem1989.dsd.txt

Size:

26253 byte

Authentication:

1a70a70409f9be229e823812bb134ebd Calculated By MD5

Externally Defined Format:

Format Name:

text/plain

Data:

https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210398001/1/392ffff125b26f947b8cfc5727b5b805

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Core Research Areas	inorganic nutrients, primary production
LTER Controlled Vocabulary v1	distribution, net primary production, soil, soil chemistry, soil nutrients
none	net primary production
Jornada Basin project names	NPP study, study 398
Jornada Basin place names	NPP locations

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package

Description:

Data collection

You can replace these with something for your dataset. For the template example the data came from R’s mtcars dataset.

QA/QC

None, its just an example.

Statistics

Super significant in all areas, dude!

People and Organizations

Publishers:

Organization:

Environmental Data Initiative

Email Address:

info@environmentaldatainitiative.org

Web Address:

https://environmentaldatainitiative.org

Id:

https://ror.org/0330j0z60

Creators:

Individual:

Wes Jarrell

Organization:

New Mexico State University

Address:

Las Cruces, NM 88003-8003 U.S.A.

Individual:	Ross Virginia
Organization:	Dartmouth College
Id:	https://orcid.org/0000-0002-0890-0981

Individual:

Solange Silva

Organization:

New Mexico State University

Address:

Las Cruces, NM 88003-8003 U.S.A.

Individual:

Robin McBride

Organization:

New Mexico State University

Address:

Las Cruces, NM 88003-8003 U.S.A.

Contacts:

Organization:

Jornada Basin LTER

Position:

Jornada Basin LTER Information Manager

Address:

P.O. Box 30003, MSC 3JER New Mexico State University,

Las Cruces, NM 88003-8003 USA

Phone:

575-646-1739

Email Address:

jornada.data@nmsu.edu

Web Address:

https://lter.jornada.nmsu.edu/information-management/

Metadata Providers:

Organization:

Jornada Basin LTER

Address:

P.O. Box 30003; MSC 3JER New Mexico State University,

Las Cruces, NM 88003-8003 USA

Web Address:

https://lter.jornada.nmsu.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period

Begin:

1989-06-01

End:

1989-06-30

Geographic Region:

Description:

NPP study locations: There are 15 sites used in the NPP study, spanning 5 vegetation community types in the Jornada Basin. This bounding box includes all 15 sites. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).

Bounding Coordinates:

Northern:	32.669000	Southern:	32.488000
Western:	-106.865000	Eastern:	-106.713000

Project

Parent Project Information:

Title:

Jornada Basin LTER

Personnel:

Individual:

Dr. Walter Whitford

Address:

P.O. Box 30003, MSC 3JER,

New Mexico State University,

Las Cruces, NM 88003-8003 United States

Phone:

575-646-1739 (voice)

Email Address:

jornada.lter@nmsu.edu

Role:

Principal Investigator

Individual:

Dr. William Schlesinger

Address:

Earth and Ocean Sciences,

Duke University, A150 LSRC,

Durham, NC 27708 United States

Phone:

NA (voice)

Email Address:

schlesingerw@caryinstitute.org

Role:

Co-Principal Investigator

Abstract:

The Jornada Basin Long-Term Ecological Research (LTER) program is part of a national network of long-term ecological research sites funded by the US National Science Foundation (NSF). The Jornada LTER program has been continuously funded since 1982 to develop general principles governing changes between grassland and shrubland ecosystems based on long-term data collected in the Chihuahuan Desert. We translate our findings to dryland ecosystems around the world, and forecast the dynamics of future ecosystem states in response to changing climate and land use.

Funding:

JRN is funded by the National Science Foundation under award DEB 8811160.

Maintenance

Maintenance:

Description:	complete
Frequency:	notPlanned

Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'dS/m'
        |     |     |     |  \___attribute 'id' = 'decisiemensPerMeter'
        |     |     |     |  \___attribute 'multiplierToSI' = '10'
        |     |     |     |  \___attribute 'name' = 'decisiemensPerMeter'
        |     |     |     |  \___attribute 'parentSI' = 'siemensPerMeter'
        |     |     |     |  \___attribute 'unitType' = 'conductance'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'SI unit for conductivity, measure of a material\'s ability to conduct an \n      electric current.'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'dimensionless'
        |     |     |     |  \___attribute 'name' = 'dimensionless'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'a designation asserting the absence of an associated unit'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'g/kg'
        |     |     |     |  \___attribute 'id' = 'gramsPerKilogram'
        |     |     |     |  \___attribute 'multiplierToSI' = '1000'
        |     |     |     |  \___attribute 'name' = 'gramsPerKilogram'
        |     |     |     |  \___attribute 'parentSI' = 'gramsPerGram'
        |     |     |     |  \___attribute 'unitType' = 'massPerMass'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'grams per kilogram'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'µE/l'
        |     |     |     |  \___attribute 'id' = 'microequivalentPerLiter'
        |     |     |     |  \___attribute 'name' = 'microequivalentPerLiter'
        |     |     |     |  \___attribute 'parentSI' = 'molePerMeterCubed'
        |     |     |     |  \___attribute 'unitType' = 'amountOfSubstanceConcentration'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'concentration of charge (on dissolved ions). conversions must know the name of the ion; a single multiplier to SI is not possible\n'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'mg/kg'
        |     |     |     |  \___attribute 'id' = 'milligramPerKilogram'
        |     |     |     |  \___attribute 'multiplierToSI' = '0.000001'
        |     |     |     |  \___attribute 'name' = 'milligramPerKilogram'
        |     |     |     |  \___attribute 'parentSI' = 'gramPerGram'
        |     |     |     |  \___attribute 'unitType' = 'massPerMass'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'milligrams per kilogram'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = '-log([H+])'
        |     |     |     |  \___attribute 'id' = 'pH'
        |     |     |     |  \___attribute 'multiplierToSI' = '0'
        |     |     |     |  \___attribute 'name' = 'pH'
        |     |     |     |  \___attribute 'parentSI' = 'molesPerMole'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Potential of Hydrogen (pH) measured as the negative logarithm of H+ concentration in solution'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = '%'
        |     |     |     |  \___attribute 'id' = 'percent'
        |     |     |     |  \___attribute 'multiplierToSI' = '1'
        |     |     |     |  \___attribute 'name' = 'percent'
        |     |     |     |  \___attribute 'parentSI' = 'dimensionless'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'percent, one part per hundred parts. a decimal ratio multipled by 100'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

Copyright 2024 Environmental Data Initiative. This material is based upon work supported by the National Science Foundation under grants #2223103 and #2223104. Any opinions, findings, conclusions, or recommendations expressed in the material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. Please contact us with questions, comments, or for technical assistance regarding this web site or the Environmental Data Initiative. Please read our privacy policy to know what information we collect about you and to understand your privacy rights.

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

Data Package Metadata View Summary

Soil chemistry and nutrient distribution in long-term NPP plots at the Jornada Basin LTER site, 1989

Data Entities

Data Table

Non-Categorized Data Resource

Data Package Usage Rights

Keywords

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Data collection

QA/QC

Statistics

People and Organizations

Temporal, Geographic and Taxonomic Coverage

Project

Parent Project Information:

Maintenance

Additional Metadata

Recently Added

Recently Updated

Data Package Metadata View Summary

Soil chemistry and nutrient distribution in long-term NPP plots at the Jornada Basin LTER site, 1989

+/- Data Entities

Data Table

Non-Categorized Data Resource

+/- Data Package Usage Rights

+/- Keywords

+/- Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Data collection

QA/QC

Statistics

+/- People and Organizations

+/- Temporal, Geographic and Taxonomic Coverage

+/- Project

Parent Project Information:

+/- Maintenance

+/- Additional Metadata

Data Entities

Data Package Usage Rights

Keywords

Methods and Protocols

People and Organizations

Temporal, Geographic and Taxonomic Coverage

Project

Maintenance

Additional Metadata