Data Package Metadata   View Summary

Systems Ecology Lab Bajada Site: Weekly phenology observations of shrub and grass species at a bajada site at Jornada Basin LTER from 2010-2019

General Information
Data Package:
Local Identifier:knb-lter-jrn.210408005.4
Title:Systems Ecology Lab Bajada Site: Weekly phenology observations of shrub and grass species at a bajada site at Jornada Basin LTER from 2010-2019
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This dataset contains field-observed plot level phenology data for three perennial shrubs and one perennial grass at a bajada site at the Jornada Basin LTER site from 2010 to present. Shrubs include creosote (Larrea tridentata), honey mesquite (Prosopis glandulosa), and tarbush (Fluorensia). The grass is bush muhly grass (Muhlenbergia porteri). The protocols and phenophase categories were developed by the US National Phenology Network (US-NPN) to detect the different life-cycles of the plant, from leaf development (breaking leaf buds, young unfolded leaves, percentage of leaves in canopy), to flower development (flower buds, open flowers, full flowering), and presence of fruit (ripe fruits, fruits from past growing season). Field data sheets were modified from the US-NPN to record the presence or absence of each phenophase recorded at each observation period for each tagged plant. This dataset is complete.

Publication Date:2022-03-16
Language:English
For more information:
Visit: https://jrn.lternet.edu
Visit: DOI PLACE HOLDER

Time Period
Begin:
2010-03-09
End:
2019-12-20

People and Organizations
Contact:Jornada Basin LTER Information Manager (Jornada Basin LTER) [  email ]
Creator:Flores, Alejandra (University of Texas at El Paso)
Creator:Tweedie, Craig (University of Texas at El Paso)
Creator:Gonzalez, Libia (University of Texas at El Paso)
Creator:Laney, Christine (University of Texas at El Paso, )
Creator:Luna, Robin Naomi (University of Texas at El Paso)
Associate:Mauritz, Marguerite (University of Texas at El Paso, associate scientist)
Associate:Ramirez, Gesuri (University of Texas at El Paso, field manager)
Associate:Hanggitto, Muhammad (University of Texas at El Paso, field technician)
Associate:Aline, Jaimes (University of Texas at El Paso, associate scientist)
Associate:Herrera, Jose (University of Texas at El Paso, associate scientist)

Data Entities
Data Table Name:
Phenology data for Flourensia cernua
Description:
Twice monthly binary phenophase data for FLCE individuals
Data Table Name:
Phenology data for Larrea tridentata
Description:
Twice monthly binary phenophase data for LATR individuals
Data Table Name:
Phenology data for Muhlenbergia porteri
Description:
Twice monthly binary phenophase data for MUPO individuals
Data Table Name:
Phenology data for Prosopsis glandulosa
Description:
Twice monthly binary phenophase data for PRGL individuals
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210408005/4/3562ff5d2d9b91057c65cbc349d129cd
Name:Phenology data for Flourensia cernua
Description:Twice monthly binary phenophase data for FLCE individuals
Number of Records:12434
Number of Columns:19

Table Structure
Object Name:jrn_408005_FLCEphenology.csv
Size:795754 byte
Authentication:097342569e773d9a833ab1539188e2e9 Calculated By MD5
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Table Column Descriptions
 DatePlant IDTransectSiteSpecies codePlant numberDeciduous shrub code 1Deciduous shrub code 2Deciduous shrub code 3Deciduous shrub code 4Deciduous shrub code 5Deciduous shrub code 6Deciduous shrub code 7Deciduous shrub code 8Deciduous shrub code 9Deciduous shrub code 10Deciduous shrub code 11Deciduous shrub code 12Deciduous shrub code 13
Column Name:date  
plant_id  
transect  
site  
species_code  
plantnum  
DS01  
DS02  
DS03  
DS04  
DS05  
DS06  
DS07  
DS08  
DS09  
DS10  
DS11  
DS12  
DS13  
Definition:Date of observationPlant id code [aggregate of transect, site, species_code, and plantnum]Transect IDSite IDSpecies code [FLCE only]Plant numberBreaking leaf buds (Deciduous shrubs binary value)Leaves (Deciduous shrubs binary value)>25% total leaves (Deciduous shrubs binary value)>= 75% total leaves (Deciduous shrubs binary value)>=50% leaves fallen (Deciduous shrubs binary value)All leaves fallen (Deciduous shrubs binary value)Flower buds (Deciduous shrubs binary value)Open flowers (Deciduous shrubs binary value)Full flowering (Deciduous shrubs binary value)Fruits (Deciduous shrubs binary value)Ripe fruits (Deciduous shrubs binary value)Recent fruit drop (Deciduous shrubs binary value)Fruit from past growing season (Deciduous shrubs binary value)
Storage Type:dateTime  
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integer  
integer  
integer  
Measurement Type:dateTimenominalnominalnominalnominalintervalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominal
Measurement Values Domain:
FormatYYYY-MM-DD
Precision1
Definitionany text
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeE
DefinitionEast transect
Source
Code Definition
CodeNW
DefinitionNorthwest transect
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CodeS
DefinitionSouth transect
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Allowed Values and Definitions
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DefinitionSite 3
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Code Definition
CodeS4
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Code Definition
CodeS5
DefinitionSite 5
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Code Definition
CodeS6
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DefinitionFLCE only
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Accuracy Report:                                      
Accuracy Assessment:                                      
Coverage:                                      
Methods:                                      

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210408005/4/4426a025f95f409934c55b76ac615306
Name:Phenology data for Larrea tridentata
Description:Twice monthly binary phenophase data for LATR individuals
Number of Records:16342
Number of Columns:14

Table Structure
Object Name:jrn_408005_LATRphenology.csv
Size:886154 byte
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Table Column Descriptions
 DatePlant IDTransectSiteSpecies codePlant numberBroadleaf evergreen code 1Broadleaf evergreen code 2Broadleaf evergreen code 3Broadleaf evergreen code 4Broadleaf evergreen code 5Broadleaf evergreen code 6Broadleaf evergreen code 7Broadleaf evergreen code 8
Column Name:date  
plant_id  
transect  
site  
species_code  
plantnum  
BE01  
BE02  
BE03  
BE04  
BE05  
BE06  
BE07  
BE08  
Definition:Date of observationPlant id code [aggregate of transect, site, species_code, and plantnum]Transect IDSite IDSpecies code [LATR only]Plant numberBreaking Leaf buds (Broadleaf Evergreen binary value)Young unfolded leaves (Broadleaf Evergreen binary value)Flower Buds (Broadleaf Evergreen binary value)Open flowers (Broadleaf Evergreen binary value)Full flowering (Broadleaf Evergreen binary value)Fruits (Broadleaf Evergreen binary value)Ripe fruits (Broadleaf Evergreen binary value)Fruits from past growing season (Broadleaf Evergreen binary value)
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Measurement Values Domain:
FormatYYYY-MM-DD
Precision1
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DefinitionNorthwest transect
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Accuracy Report:                            
Accuracy Assessment:                            
Coverage:                            
Methods:                            

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210408005/4/60c1545259318565219dbea76fbda559
Name:Phenology data for Muhlenbergia porteri
Description:Twice monthly binary phenophase data for MUPO individuals
Number of Records:16342
Number of Columns:14

Table Structure
Object Name:jrn_408005_MUPOphenology.csv
Size:886140 byte
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Table Column Descriptions
 DatePlant IDTransectSiteSpecies codePlant numberGrass code 1Grass code 2Grass code 3Grass code 4Grass code 5Grass code 6Grass code 7Grass code 8
Column Name:date  
plant_id  
transect  
site  
species_code  
plantnum  
GR01  
GR02  
GR03  
GR04  
GR05  
GR06  
GR07  
GR08  
Definition:Date of observationPlant id code [aggregate of transect, site, species_code, and plantnum]Transect IDSite IDSpecies code [MUPO only]Plant numberInitial growth (Grass binary value)Leaves (Grass binary value)All leaves withered (Grass binary value)Flower heads (Grass binary value)Open flowers (Grass binary value)Grains (Grass binary value)Ripe grains (Grass binary value)Grains from past growing season (Grass binary value)
Storage Type:dateTime  
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DefinitionSite 3
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Accuracy Report:                            
Accuracy Assessment:                            
Coverage:                            
Methods:                            

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210408005/4/fb3f97f3dfef1f21513ab6e30a593764
Name:Phenology data for Prosopsis glandulosa
Description:Twice monthly binary phenophase data for PRGL individuals
Number of Records:16342
Number of Columns:19

Table Structure
Object Name:jrn_408005_PRGLphenology.csv
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Table Column Descriptions
 DatePlant IDTransectSiteSpecies codePlant numberDeciduous shrub code 1Deciduous shrub code 2Deciduous shrub code 3Deciduous shrub code 4Deciduous shrub code 5Deciduous shrub code 6Deciduous shrub code 7Deciduous shrub code 8Deciduous shrub code 9Deciduous shrub code 10Deciduous shrub code 11Deciduous shrub code 12Deciduous shrub code 13
Column Name:date  
plant_id  
transect  
site  
species_code  
plantnum  
DS01  
DS02  
DS03  
DS04  
DS05  
DS06  
DS07  
DS08  
DS09  
DS10  
DS11  
DS12  
DS13  
Definition:Date of observationPlant id code [aggregate of transect, site, species_code, and plantnum]Transect IDSite IDSpecies code [PRGL only]Plant numberBreaking leaf buds (Deciduous shrubs binary value)Leaves (Deciduous shrubs binary value)>25% total leaves (Deciduous shrubs binary value)>= 75% total leaves (Deciduous shrubs binary value)>=50% leaves fallen (Deciduous shrubs binary value)All leaves fallen (Deciduous shrubs binary value)Flower buds (Deciduous shrubs binary value)Open flowers (Deciduous shrubs binary value)Full flowering (Deciduous shrubs binary value)Fruits (Deciduous shrubs binary value)Ripe fruits (Deciduous shrubs binary value)Recent fruit drop (Deciduous shrubs binary value)Fruit from past growing season (Deciduous shrubs binary value)
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Accuracy Report:                                      
Accuracy Assessment:                                      
Coverage:                                      
Methods:                                      

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabulary v1biological events, bud burst, deserts, flowering, grasses, plant phenology, shrubs
noneCreosote , Flourensia , Larrea tridentata , Mesquite , Muhlenbergia , Muhly grass , Prosopsis glandulosa , Tarbush , UTEP, bud break, ecosystem dynamics, senescence
Jornada Basin LTER dataset keywordsSystems Ecology Lab
Jornada Basin project namesSEL Bajada, study 408
Jornada Basin place namesSEL Bajada

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Site description

These observations were made on three transects established at the Systems Ecology Lab’s Bajada site at the Jornada Basin LTER. For more information about the site see the Additional Information metadata.

Observations

Since March 2010, field phenology observations of 4 species were collected weekly from April to December and bi-weekly from the end of December to March along three transects. The northwest, and south transects, approximately 300 meters long include six sites each, spaced every 50 meters apart. Each site at the NW and S transect consists of three individually tagged plants with a total of 36 plants, except for tarbush which was not found in every site with a total of 24 plants. The east phenology transect (only one site), built along a tram system that measures hyperspectral vegetation indices, consists of 10 individually tagged plants for each of the species; creosote, tarbush, honey mesquite, and bush muhly. Each sampling day, a field crew member measures the presence or absence of the foliar growth and reproductive phenological cycles as described in the National Phenology Network protocol (see Denny et al 2012) for each plant and phenophase.

References

Denny, E. G. (2012) USA-NPN Technical Report Series 2012. USA National Phenology Network USA NPN Plant and Animal Phenophase Definitions

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Alejandra Flores
Organization:University of Texas at El Paso
Address:
,
El Paso, TX U.S.A.
Individual: Craig Tweedie
Organization:University of Texas at El Paso
Address:
,
El Paso, TX U.S.A.
Individual: Libia Gonzalez
Organization:University of Texas at El Paso
Address:
El Paso, TX U.S.A.
Individual: Christine Laney
Organization:University of Texas at El Paso
Address:
El Paso, TX U.S.A.
Individual: Robin Naomi Luna
Organization:University of Texas at El Paso
Address:
El Paso, TX U.S.A.
Contacts:
Organization:Jornada Basin LTER
Position:Jornada Basin LTER Information Manager
Address:
P.O. Box 30003, MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Phone:
575-646-1739
Email Address:
jornada.data@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu/information-management/
Associated Parties:
Individual: Marguerite Mauritz
Organization:University of Texas at El Paso
Address:
,
El Paso, TX U.S.A.
Role:associate scientist
Individual: Gesuri Ramirez
Organization:University of Texas at El Paso
Address:
,
El Paso, TX U.S.A.
Role:field manager
Individual: Muhammad Hanggitto
Organization:University of Texas at El Paso
Address:
,
El Paso, TX U.S.A.
Role:field technician
Individual: Jaimes Aline
Organization:University of Texas at El Paso
Address:
,
El Paso, TX U.S.A.
Role:associate scientist
Individual: Jose Herrera
Organization:University of Texas at El Paso
Address:
,
El Paso, TX U.S.A.
Role:associate scientist
Metadata Providers:
Organization:Jornada Basin LTER
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Web Address:
https://lter.jornada.nmsu.edu

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2010-03-09
End:
2019-12-20
Geographic Region:
Description:Eastern Bajada: Study occurred in the eastern bajada geomorphic zone in the Jornada Basin. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.689571Southern:  32.531184
Western:  -106.684611Eastern:  -106.590363

Project

Parent Project Information:

Title:The SEL Bajada site at Jornada Basin
Personnel:
Individual:Dr. Craig Tweedie
Address:
500 West University Avenue,
University of Texas at El Paso,
El Paso, TX 79968 United States
Phone:
915-747-5000 (voice)
Email Address:
ctweedie@utep.edu
Role:Principal Investigator for Cyber-ShARE and JRN LTER
Individual:Dr. Ann Gates
Address:
500 West University Avenue,
University of Texas at El Paso,
El Paso, TX 79968 United States
Phone:
915-747-5000 (voice)
Email Address:
ctweedie@utep.edu
Role:Principal Investigator for Cyber-ShARE
Individual:Dr. Niall Hanan
Address:
P.O. Box 30003, MSC 3JER,
New Mexico State University,
Las Cruces, NM 88003-8003 United States
Phone:
575-646-3335 (voice)
Email Address:
nhanan@nmsu.edu
Role:Principal Investigator (LTER)
Abstract:

The Systems Ecology Lab Bajada site is jointly funded under the NSF CREST Program (Centers of Research Excellence in Science and Technology), with support from the Jornada Basin LTER program. The JRN LTER is part of a national network of long-term ecological research sites funded by the US National Science Foundation (NSF). The JRN LTER program has been continuously funded since 1982 to develop general principles governing changes between grassland and shrubland ecosystems based on ong-term data collected in the Chihuahuan Desert.

Funding:

The SEL Bajada site is supported by CREST: Cyber-ShARE Center of Excellence awards, Phase I (734825) and II (1242122), from the National Science Foundation. The Cyber-ShARE Center of Excellence is based at the University of Texas at El Paso. The JRN LTER program is funded by the National Science Foundation under award DEB 2025166 .

Maintenance

Maintenance:
Description:complete
Frequency:notPlanned
Other Metadata

Additional Metadata

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EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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